RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 BCS1LQ9Y276 419 aa15.62■□□□□ 0.09
CSDE1-215ENST00000533818 KDM2AQ9Y2K7 1162 aa15.62■□□□□ 0.09
CSDE1-215ENST00000533818 KDM2BQ8NHM5 1336 aa15.62■□□□□ 0.09
CSDE1-215ENST00000533818 CICQ96RK0 1608 aaPredicted RBP15.61■□□□□ 0.09
CSDE1-215ENST00000533818 SRPK2P78362 688 aaKnown RBP15.61■□□□□ 0.09
CSDE1-215ENST00000533818 C9orf131Q5VYM1 1079 aa15.6■□□□□ 0.09
CSDE1-215ENST00000533818 PPARGC1BQ86YN6 1023 aaKnown RBP15.6■□□□□ 0.09
CSDE1-215ENST00000533818 PRDM10Q9NQV6 1147 aa15.6■□□□□ 0.09
CSDE1-215ENST00000533818 MLLT1Q03111 559 aaPredicted RBP15.59■□□□□ 0.09
CSDE1-215ENST00000533818 CABP1Q9NZU7 370 aa15.59■□□□□ 0.09
CSDE1-215ENST00000533818 RGPD5Q99666 1765 aa15.59■□□□□ 0.09
CSDE1-215ENST00000533818 ANKRD36BQ8N2N9 1353 aa15.58■□□□□ 0.08
CSDE1-215ENST00000533818 FOXN1O15353 648 aa15.57■□□□□ 0.08
CSDE1-215ENST00000533818 CABP2Q9NPB3 220 aa15.57■□□□□ 0.08
CSDE1-215ENST00000533818 PLEKHG2Q9H7P9 1386 aa15.57■□□□□ 0.08
CSDE1-215ENST00000533818 ERBB3P21860 1342 aa15.56■□□□□ 0.08
CSDE1-215ENST00000533818 KCPQ6ZWJ8 1503 aa15.56■□□□□ 0.08
CSDE1-215ENST00000533818 C10orf71Q711Q0 1435 aa15.55■□□□□ 0.08
CSDE1-215ENST00000533818 NSD2O96028 1365 aa15.55■□□□□ 0.08
CSDE1-215ENST00000533818 USP47Q96K76 1375 aa15.55■□□□□ 0.08
CSDE1-215ENST00000533818 HMGB2P26583 209 aaKnown RBP15.55■□□□□ 0.08
CSDE1-215ENST00000533818 DCAF11Q8TEB1 546 aa15.55■□□□□ 0.08
CSDE1-215ENST00000533818 ABHD8Q96I13 439 aa15.55■□□□□ 0.08
CSDE1-215ENST00000533818 PIK3C2AO00443 1686 aa15.54■□□□□ 0.08
CSDE1-215ENST00000533818 A0A0G2JLW4 131 aa15.54■□□□□ 0.08
CSDE1-215ENST00000533818 FCHSD2O94868 740 aa15.54■□□□□ 0.08
CSDE1-215ENST00000533818 SMIM5Q71RC9 77 aa15.54■□□□□ 0.08
CSDE1-215ENST00000533818 TGFB2P61812 414 aa15.53■□□□□ 0.08
CSDE1-215ENST00000533818 LY75O60449 1722 aa15.53■□□□□ 0.08
CSDE1-215ENST00000533818 PHF14O94880 888 aa15.52■□□□□ 0.08
CSDE1-215ENST00000533818 CTCFP49711 727 aaPredicted RBP15.52■□□□□ 0.08
CSDE1-215ENST00000533818 ANKRD24Q8TF21 1146 aa15.52■□□□□ 0.08
CSDE1-215ENST00000533818 AK7Q96M32 723 aa15.52■□□□□ 0.08
CSDE1-215ENST00000533818 TTC21BQ7Z4L5 1316 aa15.51■□□□□ 0.07
CSDE1-215ENST00000533818 RNF181Q9P0P0 153 aa15.51■□□□□ 0.07
CSDE1-215ENST00000533818 PXDNLA1KZ92 1463 aa15.51■□□□□ 0.07
CSDE1-215ENST00000533818 AMIGO3Q86WK7 504 aa15.5■□□□□ 0.07
CSDE1-215ENST00000533818 AIDAQ96BJ3 306 aa15.5■□□□□ 0.07
CSDE1-215ENST00000533818 MKRN1Q9UHC7 482 aaKnown RBP15.5■□□□□ 0.07
CSDE1-215ENST00000533818 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.49■□□□□ 0.07
CSDE1-215ENST00000533818 RGS19P49795 217 aa15.49■□□□□ 0.07
CSDE1-215ENST00000533818 STAC3Q96MF2 364 aa15.49■□□□□ 0.07
CSDE1-215ENST00000533818 NFAT5O94916 1531 aa15.48■□□□□ 0.07
CSDE1-215ENST00000533818 MMP10P09238 476 aa15.48■□□□□ 0.07
CSDE1-215ENST00000533818 VEGFAP15692 232 aaPredicted RBP15.48■□□□□ 0.07
CSDE1-215ENST00000533818 CCDC85CA6NKD9 419 aa15.47■□□□□ 0.07
CSDE1-215ENST00000533818 DPEP1P16444 411 aa15.47■□□□□ 0.07
CSDE1-215ENST00000533818 LBX1P52954 281 aa15.47■□□□□ 0.07
CSDE1-215ENST00000533818 ZNF692Q9BU19 519 aaPredicted RBP15.47■□□□□ 0.07
CSDE1-215ENST00000533818 TTC21AQ8NDW8 1320 aa15.46■□□□□ 0.07
CSDE1-215ENST00000533818 ZCRB1Q8TBF4 217 aaKnown RBP15.46■□□□□ 0.07
CSDE1-215ENST00000533818 CREBZFQ9NS37 354 aa15.45■□□□□ 0.06
CSDE1-215ENST00000533818 SSFA2P28290 1259 aa15.44■□□□□ 0.06
CSDE1-215ENST00000533818 USP54Q70EL1 1684 aa15.44■□□□□ 0.06
CSDE1-215ENST00000533818 NSD3Q9BZ95 1437 aa15.43■□□□□ 0.06
CSDE1-215ENST00000533818 DOT1LQ8TEK3 1739 aa15.43■□□□□ 0.06
CSDE1-215ENST00000533818 PALLDQ8WX93 1383 aa15.43■□□□□ 0.06
CSDE1-215ENST00000533818 C5P01031 1676 aa15.43■□□□□ 0.06
CSDE1-215ENST00000533818 TNRC6CQ9HCJ0 1690 aaKnown RBP15.42■□□□□ 0.06
CSDE1-215ENST00000533818 LTV1Q96GA3 475 aaPredicted RBP15.41■□□□□ 0.06
CSDE1-215ENST00000533818 QRICH2Q9H0J4 1663 aa15.41■□□□□ 0.06
CSDE1-215ENST00000533818 CENPJQ9HC77 1338 aaPredicted RBP15.41■□□□□ 0.06
CSDE1-215ENST00000533818 N4BP2Q86UW6 1770 aaPredicted RBP15.4■□□□□ 0.06
CSDE1-215ENST00000533818 KCNA3P22001 575 aa15.4■□□□□ 0.06
CSDE1-215ENST00000533818 DCAF5Q96JK2 942 aa15.4■□□□□ 0.06
CSDE1-215ENST00000533818 PIM2Q9P1W9 311 aa15.4■□□□□ 0.06
CSDE1-215ENST00000533818 KIAA1210Q9ULL0 1709 aa15.4■□□□□ 0.06
CSDE1-215ENST00000533818 GLTPD2A6NH11 291 aa15.39■□□□□ 0.05
CSDE1-215ENST00000533818 DALRD3Q5D0E6 543 aaKnown RBP15.39■□□□□ 0.05
CSDE1-215ENST00000533818 CCDC87Q9NVE4 849 aa15.39■□□□□ 0.05
CSDE1-215ENST00000533818 WBP1LQ9NX94 342 aa15.39■□□□□ 0.05
CSDE1-215ENST00000533818 PKD1L3Q7Z443 1732 aa15.39■□□□□ 0.05
CSDE1-215ENST00000533818 CNTNAP1P78357 1384 aa15.38■□□□□ 0.05
CSDE1-215ENST00000533818 C4BP0C0L5 1744 aa15.38■□□□□ 0.05
CSDE1-215ENST00000533818 MPRIPQ6WCQ1 1025 aa15.38■□□□□ 0.05
CSDE1-215ENST00000533818 SMARCC1Q92922 1105 aaPredicted RBP15.38■□□□□ 0.05
CSDE1-215ENST00000533818 ZC3H4Q9UPT8 1303 aaKnown RBP15.38■□□□□ 0.05
CSDE1-215ENST00000533818 KIAA1551Q9HCM1 1747 aa15.37■□□□□ 0.05
CSDE1-215ENST00000533818 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.37■□□□□ 0.05
CSDE1-215ENST00000533818 NLGN1Q8N2Q7 840 aa15.37■□□□□ 0.05
CSDE1-215ENST00000533818 GNPATO15228 680 aa15.36■□□□□ 0.05
CSDE1-215ENST00000533818 HSPA8P11142 646 aaKnown RBP15.36■□□□□ 0.05
CSDE1-215ENST00000533818 VEGFBP49765 207 aa15.36■□□□□ 0.05
CSDE1-215ENST00000533818 TMF1P82094 1093 aa15.36■□□□□ 0.05
CSDE1-215ENST00000533818 KTN1Q86UP2 1357 aaKnown RBP15.36■□□□□ 0.05
CSDE1-215ENST00000533818 TOGARAM1Q9Y4F4 1720 aa15.35■□□□□ 0.05
CSDE1-215ENST00000533818 NBPF1Q3BBV0 1214 aa15.35■□□□□ 0.05
CSDE1-215ENST00000533818 IP6K1Q92551 441 aa15.35■□□□□ 0.05
CSDE1-215ENST00000533818 CFAP44Q96MT7 982 aa15.35■□□□□ 0.05
CSDE1-215ENST00000533818 KIF13BQ9NQT8 1826 aa15.35■□□□□ 0.05
CSDE1-215ENST00000533818 USP31Q70CQ4 1352 aa15.35■□□□□ 0.05
CSDE1-215ENST00000533818 TAF1LQ8IZX4 1826 aa15.34■□□□□ 0.05
CSDE1-215ENST00000533818 LINC00116Q8NCU8 138 aa15.34■□□□□ 0.05
CSDE1-215ENST00000533818 PARP3Q9Y6F1 533 aa15.34■□□□□ 0.05
CSDE1-215ENST00000533818 POTECB2RU33 542 aa15.33■□□□□ 0.04
CSDE1-215ENST00000533818 CHADLQ6NUI6 762 aa15.33■□□□□ 0.04
CSDE1-215ENST00000533818 NME9Q86XW9 330 aa15.33■□□□□ 0.04
CSDE1-215ENST00000533818 EVC2Q86UK5 1308 aa15.33■□□□□ 0.04
CSDE1-215ENST00000533818 UBR3Q6ZT12 1888 aa15.33■□□□□ 0.04
CSDE1-215ENST00000533818 RASSF7Q02833 373 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms