RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 SLIT2O94813 1529 aa20.88■□□□□ 0.93
TRIM3-213ENST00000533309 TOM1L2Q6ZVM7 507 aa20.88■□□□□ 0.93
TRIM3-213ENST00000533309 THUMPD2Q9BTF0 503 aaKnown RBP20.88■□□□□ 0.93
TRIM3-213ENST00000533309 CRB1P82279 1406 aa20.88■□□□□ 0.93
TRIM3-213ENST00000533309 IL16Q14005 1332 aa20.88■□□□□ 0.93
TRIM3-213ENST00000533309 SPATA31A6Q5VVP1 1343 aa20.88■□□□□ 0.93
TRIM3-213ENST00000533309 CARD10Q9BWT7 1032 aa20.87■□□□□ 0.93
TRIM3-213ENST00000533309 WNK3Q9BYP7 1800 aa20.86■□□□□ 0.93
TRIM3-213ENST00000533309 MAP3K5Q99683 1374 aa20.86■□□□□ 0.93
TRIM3-213ENST00000533309 EVA1CP58658 441 aa20.86■□□□□ 0.93
TRIM3-213ENST00000533309 DCTN1Q14203 1278 aa20.86■□□□□ 0.93
TRIM3-213ENST00000533309 RAPGEF4Q8WZA2 1011 aa20.85■□□□□ 0.93
TRIM3-213ENST00000533309 OVOS2A0A0G2JMS6 1433 aa20.84■□□□□ 0.93
TRIM3-213ENST00000533309 SHANK3Q9BYB0 1731 aa20.84■□□□□ 0.93
TRIM3-213ENST00000533309 AMOTQ4VCS5 1084 aa20.84■□□□□ 0.93
TRIM3-213ENST00000533309 PLEKHO1Q53GL0 409 aaPredicted RBP20.84■□□□□ 0.93
TRIM3-213ENST00000533309 ADAMTS7Q9UKP4 1686 aa20.83■□□□□ 0.93
TRIM3-213ENST00000533309 MCM10Q7L590 875 aa20.83■□□□□ 0.93
TRIM3-213ENST00000533309 GNAT3A8MTJ3 354 aa20.82■□□□□ 0.92
TRIM3-213ENST00000533309 TATP17735 454 aaPredicted RBP20.82■□□□□ 0.92
TRIM3-213ENST00000533309 HTATSF1O43719 755 aaKnown RBP20.82■□□□□ 0.92
TRIM3-213ENST00000533309 ZNF530Q6P9A1 599 aaPredicted RBP20.82■□□□□ 0.92
TRIM3-213ENST00000533309 FANCIQ9NVI1 1328 aa20.82■□□□□ 0.92
TRIM3-213ENST00000533309 CALD1Q05682 793 aaKnown RBP20.81■□□□□ 0.92
TRIM3-213ENST00000533309 MYH16Q9H6N6 1097 aa20.81■□□□□ 0.92
TRIM3-213ENST00000533309 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.81■□□□□ 0.92
TRIM3-213ENST00000533309 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.8■□□□□ 0.92
TRIM3-213ENST00000533309 ZNF853P0CG23 659 aa20.8■□□□□ 0.92
TRIM3-213ENST00000533309 TSR2Q969E8 191 aaKnown RBP20.8■□□□□ 0.92
TRIM3-213ENST00000533309 SCN11AQ9UI33 1791 aa20.8■□□□□ 0.92
TRIM3-213ENST00000533309 DISP2A7MBM2 1401 aa20.79■□□□□ 0.92
TRIM3-213ENST00000533309 AKAP4Q5JQC9 854 aa20.79■□□□□ 0.92
TRIM3-213ENST00000533309 RTF1Q92541 710 aaKnown RBP20.79■□□□□ 0.92
TRIM3-213ENST00000533309 IFT57Q9NWB7 429 aa20.79■□□□□ 0.92
TRIM3-213ENST00000533309 CEMIPQ8WUJ3 1361 aa20.79■□□□□ 0.92
TRIM3-213ENST00000533309 IL17REQ8NFR9 667 aa20.78■□□□□ 0.92
TRIM3-213ENST00000533309 BCL9LQ86UU0 1499 aa20.78■□□□□ 0.92
TRIM3-213ENST00000533309 SIPA1L3O60292 1781 aaPredicted RBP20.78■□□□□ 0.92
TRIM3-213ENST00000533309 IL2RBP14784 551 aa20.78■□□□□ 0.92
TRIM3-213ENST00000533309 CFAP44Q96MT7 982 aa20.78■□□□□ 0.92
TRIM3-213ENST00000533309 GNAI1P63096 354 aa20.77■□□□□ 0.92
TRIM3-213ENST00000533309 C8orf37Q96NL8 207 aa20.77■□□□□ 0.92
TRIM3-213ENST00000533309 USP35Q9P2H5 1018 aa20.77■□□□□ 0.92
TRIM3-213ENST00000533309 SUPT16HQ9Y5B9 1047 aaKnown RBP20.77■□□□□ 0.92
TRIM3-213ENST00000533309 RCAN3Q9UKA8 241 aa20.76■□□□□ 0.91
TRIM3-213ENST00000533309 SPG7Q9UQ90 795 aa20.76■□□□□ 0.91
TRIM3-213ENST00000533309 C1orf141Q5JVX7 400 aa20.75■□□□□ 0.91
TRIM3-213ENST00000533309 FNBP4Q8N3X1 1017 aaPredicted RBP20.75■□□□□ 0.91
TRIM3-213ENST00000533309 SPATA31A1Q5TZJ5 1347 aa20.75■□□□□ 0.91
TRIM3-213ENST00000533309 CYP27B1O15528 508 aa20.75■□□□□ 0.91
TRIM3-213ENST00000533309 NGLY1Q96IV0 654 aa20.75■□□□□ 0.91
TRIM3-213ENST00000533309 MBIPQ9NS73 344 aa20.75■□□□□ 0.91
TRIM3-213ENST00000533309 LAS1LQ9Y4W2 734 aaKnown RBP20.75■□□□□ 0.91
TRIM3-213ENST00000533309 RNF123Q5XPI4 1314 aa20.74■□□□□ 0.91
TRIM3-213ENST00000533309 KDM6AO15550 1401 aaPredicted RBP20.74■□□□□ 0.91
TRIM3-213ENST00000533309 CHL1O00533 1208 aa20.74■□□□□ 0.91
TRIM3-213ENST00000533309 PHKG2P15735 406 aa20.74■□□□□ 0.91
TRIM3-213ENST00000533309 UNC5CLQ8IV45 518 aa20.74■□□□□ 0.91
TRIM3-213ENST00000533309 LGR6Q9HBX8 967 aa20.74■□□□□ 0.91
TRIM3-213ENST00000533309 SPATA31A5Q5VU36 1347 aa20.73■□□□□ 0.91
TRIM3-213ENST00000533309 SPATA31A7Q8IWB4 1347 aa20.73■□□□□ 0.91
TRIM3-213ENST00000533309 MPRIPQ6WCQ1 1025 aa20.73■□□□□ 0.91
TRIM3-213ENST00000533309 KDM3BQ7LBC6 1761 aa20.73■□□□□ 0.91
TRIM3-213ENST00000533309 EXOSC9Q06265 439 aaKnown RBP20.72■□□□□ 0.91
TRIM3-213ENST00000533309 ZCRB1Q8TBF4 217 aaKnown RBP20.72■□□□□ 0.91
TRIM3-213ENST00000533309 RNMTO43148 476 aaKnown RBP20.71■□□□□ 0.91
TRIM3-213ENST00000533309 IFNL2Q8IZJ0 200 aa20.71■□□□□ 0.91
TRIM3-213ENST00000533309 PCDH11XQ9BZA7 1347 aa20.71■□□□□ 0.91
TRIM3-213ENST00000533309 PCDH11YQ9BZA8 1340 aa20.71■□□□□ 0.91
TRIM3-213ENST00000533309 MRC1P22897 1456 aa20.7■□□□□ 0.9
TRIM3-213ENST00000533309 THRAP3Q9Y2W1 955 aaKnown RBP20.69■□□□□ 0.9
TRIM3-213ENST00000533309 TOGARAM1Q9Y4F4 1720 aa20.69■□□□□ 0.9
TRIM3-213ENST00000533309 VPS72Q15906 364 aa20.68■□□□□ 0.9
TRIM3-213ENST00000533309 CT47B1P0C2W7 299 aaPredicted RBP20.67■□□□□ 0.9
TRIM3-213ENST00000533309 TAF7Q15545 349 aaPredicted RBP20.67■□□□□ 0.9
TRIM3-213ENST00000533309 MEX3CQ5U5Q3 659 aaKnown RBP20.67■□□□□ 0.9
TRIM3-213ENST00000533309 TNS2Q63HR2 1409 aa20.67■□□□□ 0.9
TRIM3-213ENST00000533309 MIS18AQ9NYP9 233 aa20.67■□□□□ 0.9
TRIM3-213ENST00000533309 USP21Q9UK80 565 aa20.67■□□□□ 0.9
TRIM3-213ENST00000533309 GTF3C3Q9Y5Q9 886 aa20.67■□□□□ 0.9
TRIM3-213ENST00000533309 DCAF5Q96JK2 942 aa20.66■□□□□ 0.9
TRIM3-213ENST00000533309 BABAM1Q9NWV8 329 aa20.66■□□□□ 0.9
TRIM3-213ENST00000533309 TSPYL4Q9UJ04 414 aa20.66■□□□□ 0.9
TRIM3-213ENST00000533309 AFF2P51816 1311 aa20.66■□□□□ 0.9
TRIM3-213ENST00000533309 BARGINQ6ZT62 677 aa20.65■□□□□ 0.9
TRIM3-213ENST00000533309 TSPYL6Q8N831 410 aa20.65■□□□□ 0.9
TRIM3-213ENST00000533309 HSP90AB1P08238 724 aaKnown RBP20.64■□□□□ 0.9
TRIM3-213ENST00000533309 RARSP54136 660 aaKnown RBP20.64■□□□□ 0.9
TRIM3-213ENST00000533309 RRP1P56182 461 aaKnown RBP20.64■□□□□ 0.9
TRIM3-213ENST00000533309 TEFQ10587 303 aa20.64■□□□□ 0.9
TRIM3-213ENST00000533309 NKX1-1Q15270 411 aaPredicted RBP20.64■□□□□ 0.9
TRIM3-213ENST00000533309 C8orf58Q8NAV2 365 aa20.64■□□□□ 0.9
TRIM3-213ENST00000533309 CDCA7Q9BWT1 371 aaPredicted RBP20.64■□□□□ 0.9
TRIM3-213ENST00000533309 CCDC9Q9Y3X0 531 aaKnown RBP20.64■□□□□ 0.9
TRIM3-213ENST00000533309 GLI3P10071 1580 aa20.64■□□□□ 0.9
TRIM3-213ENST00000533309 THSD7AQ9UPZ6 1657 aa20.63■□□□□ 0.89
TRIM3-213ENST00000533309 KRT24Q2M2I5 525 aa20.63■□□□□ 0.89
TRIM3-213ENST00000533309 DDX54Q8TDD1 881 aaKnown RBP20.63■□□□□ 0.89
TRIM3-213ENST00000533309 BCAR3O75815 825 aa20.62■□□□□ 0.89
TRIM3-213ENST00000533309 FBXO41Q8TF61 875 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms