RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 NRAPQ86VF7 1730 aa24.16■■□□□ 1.46
SMPD1-208ENST00000533123 FNBP4Q8N3X1 1017 aaPredicted RBP24.16■■□□□ 1.46
SMPD1-208ENST00000533123 MEGF6O75095 1541 aa24.16■■□□□ 1.46
SMPD1-208ENST00000533123 NWD2Q9ULI1 1742 aa24.15■■□□□ 1.46
SMPD1-208ENST00000533123 TATP17735 454 aaPredicted RBP24.15■■□□□ 1.46
SMPD1-208ENST00000533123 GAS2L2Q8NHY3 880 aa24.15■■□□□ 1.46
SMPD1-208ENST00000533123 GOLGA2Q08379 1002 aa24.15■■□□□ 1.46
SMPD1-208ENST00000533123 NCBP3Q53F19 620 aaKnown RBP24.15■■□□□ 1.46
SMPD1-208ENST00000533123 UNC5CLQ8IV45 518 aa24.15■■□□□ 1.46
SMPD1-208ENST00000533123 DLG5Q8TDM6 1919 aa24.15■■□□□ 1.46
SMPD1-208ENST00000533123 PLEKHO1Q53GL0 409 aaPredicted RBP24.14■■□□□ 1.46
SMPD1-208ENST00000533123 RNF123Q5XPI4 1314 aa24.14■■□□□ 1.46
SMPD1-208ENST00000533123 BCL9LQ86UU0 1499 aa24.14■■□□□ 1.45
SMPD1-208ENST00000533123 AMOTQ4VCS5 1084 aa24.12■■□□□ 1.45
SMPD1-208ENST00000533123 USP21Q9UK80 565 aa24.12■■□□□ 1.45
SMPD1-208ENST00000533123 RCAN3Q9UKA8 241 aa24.12■■□□□ 1.45
SMPD1-208ENST00000533123 DCTN1Q14203 1278 aa24.12■■□□□ 1.45
SMPD1-208ENST00000533123 SPINK5Q9NQ38 1064 aaPredicted RBP24.12■■□□□ 1.45
SMPD1-208ENST00000533123 CCDC9Q9Y3X0 531 aaKnown RBP24.12■■□□□ 1.45
SMPD1-208ENST00000533123 IL2RBP14784 551 aa24.11■■□□□ 1.45
SMPD1-208ENST00000533123 DUSP27Q5VZP5 1158 aa24.11■■□□□ 1.45
SMPD1-208ENST00000533123 THUMPD2Q9BTF0 503 aaKnown RBP24.11■■□□□ 1.45
SMPD1-208ENST00000533123 SPATA31A1Q5TZJ5 1347 aa24.1■■□□□ 1.45
SMPD1-208ENST00000533123 ZNF530Q6P9A1 599 aaPredicted RBP24.1■■□□□ 1.45
SMPD1-208ENST00000533123 AFF2P51816 1311 aa24.09■■□□□ 1.45
SMPD1-208ENST00000533123 SLFN5Q08AF3 891 aa24.09■■□□□ 1.45
SMPD1-208ENST00000533123 LMOD3Q0VAK6 560 aa24.09■■□□□ 1.45
SMPD1-208ENST00000533123 SPATA31A5Q5VU36 1347 aa24.09■■□□□ 1.45
SMPD1-208ENST00000533123 SPATA31A7Q8IWB4 1347 aa24.09■■□□□ 1.45
SMPD1-208ENST00000533123 GNAT3A8MTJ3 354 aa24.08■■□□□ 1.45
SMPD1-208ENST00000533123 MCM10Q7L590 875 aa24.08■■□□□ 1.45
SMPD1-208ENST00000533123 WDR63Q8IWG1 891 aa24.08■■□□□ 1.45
SMPD1-208ENST00000533123 RTF1Q92541 710 aaKnown RBP24.07■■□□□ 1.44
SMPD1-208ENST00000533123 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.07■■□□□ 1.44
SMPD1-208ENST00000533123 SPG7Q9UQ90 795 aa24.07■■□□□ 1.44
SMPD1-208ENST00000533123 OVOS2A0A0G2JMS6 1433 aa24.07■■□□□ 1.44
SMPD1-208ENST00000533123 VPS72Q15906 364 aa24.06■■□□□ 1.44
SMPD1-208ENST00000533123 MAP3K5Q99683 1374 aa24.06■■□□□ 1.44
SMPD1-208ENST00000533123 C1orf141Q5JVX7 400 aa24.06■■□□□ 1.44
SMPD1-208ENST00000533123 AKAP4Q5JQC9 854 aa24.05■■□□□ 1.44
SMPD1-208ENST00000533123 TRMT2AQ8IZ69 625 aaKnown RBP24.05■■□□□ 1.44
SMPD1-208ENST00000533123 PARP4Q9UKK3 1724 aaKnown RBP24.04■■□□□ 1.44
SMPD1-208ENST00000533123 ZCRB1Q8TBF4 217 aaKnown RBP24.04■■□□□ 1.44
SMPD1-208ENST00000533123 THRAP3Q9Y2W1 955 aaKnown RBP24.04■■□□□ 1.44
SMPD1-208ENST00000533123 RRP1P56182 461 aaKnown RBP24.03■■□□□ 1.44
SMPD1-208ENST00000533123 PLEKHG2Q9H7P9 1386 aa24.03■■□□□ 1.44
SMPD1-208ENST00000533123 HTATSF1O43719 755 aaKnown RBP24.03■■□□□ 1.44
SMPD1-208ENST00000533123 IL17REQ8NFR9 667 aa24.03■■□□□ 1.44
SMPD1-208ENST00000533123 E9PSI1 815 aa24.02■■□□□ 1.44
SMPD1-208ENST00000533123 CYP27B1O15528 508 aa24.02■■□□□ 1.44
SMPD1-208ENST00000533123 MPRIPQ6WCQ1 1025 aa24.02■■□□□ 1.44
SMPD1-208ENST00000533123 DISP2A7MBM2 1401 aa24.02■■□□□ 1.44
SMPD1-208ENST00000533123 PKD1L3Q7Z443 1732 aa24.02■■□□□ 1.44
SMPD1-208ENST00000533123 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.01■■□□□ 1.43
SMPD1-208ENST00000533123 PHKG2P15735 406 aa24.01■■□□□ 1.43
SMPD1-208ENST00000533123 IFNL2Q8IZJ0 200 aa24.01■■□□□ 1.43
SMPD1-208ENST00000533123 LGR6Q9HBX8 967 aa24.01■■□□□ 1.43
SMPD1-208ENST00000533123 LAS1LQ9Y4W2 734 aaKnown RBP24.01■■□□□ 1.43
SMPD1-208ENST00000533123 ERICH6BQ5W0A0 696 aa24■■□□□ 1.43
SMPD1-208ENST00000533123 DDX54Q8TDD1 881 aaKnown RBP24■■□□□ 1.43
SMPD1-208ENST00000533123 CALD1Q05682 793 aaKnown RBP23.99■■□□□ 1.43
SMPD1-208ENST00000533123 FAM98CQ17RN3 349 aaKnown RBP23.99■■□□□ 1.43
SMPD1-208ENST00000533123 BARGINQ6ZT62 677 aa23.99■■□□□ 1.43
SMPD1-208ENST00000533123 IL16Q14005 1332 aa23.99■■□□□ 1.43
SMPD1-208ENST00000533123 PCDH11XQ9BZA7 1347 aa23.99■■□□□ 1.43
SMPD1-208ENST00000533123 PCDH11YQ9BZA8 1340 aa23.99■■□□□ 1.43
SMPD1-208ENST00000533123 TSR2Q969E8 191 aaKnown RBP23.98■■□□□ 1.43
SMPD1-208ENST00000533123 CDCA7Q9BWT1 371 aaPredicted RBP23.98■■□□□ 1.43
SMPD1-208ENST00000533123 EXOC5O00471 708 aa23.97■■□□□ 1.43
SMPD1-208ENST00000533123 GJD4Q96KN9 370 aaPredicted RBP23.97■■□□□ 1.43
SMPD1-208ENST00000533123 TRPC5Q9UL62 973 aaPredicted RBP23.97■■□□□ 1.43
SMPD1-208ENST00000533123 WNK3Q9BYP7 1800 aa23.97■■□□□ 1.43
SMPD1-208ENST00000533123 MYH16Q9H6N6 1097 aa23.96■■□□□ 1.43
SMPD1-208ENST00000533123 RNMTO43148 476 aaKnown RBP23.96■■□□□ 1.43
SMPD1-208ENST00000533123 QTRT2Q9H974 415 aaKnown RBP23.96■■□□□ 1.43
SMPD1-208ENST00000533123 CEMIPQ8WUJ3 1361 aa23.95■■□□□ 1.43
SMPD1-208ENST00000533123 CFAP44Q96MT7 982 aa23.95■■□□□ 1.42
SMPD1-208ENST00000533123 IFT57Q9NWB7 429 aa23.95■■□□□ 1.42
SMPD1-208ENST00000533123 PPP4R2Q9NY27 417 aa23.95■■□□□ 1.42
SMPD1-208ENST00000533123 SHANK3Q9BYB0 1731 aa23.95■■□□□ 1.42
SMPD1-208ENST00000533123 PLIN1O60240 522 aa23.95■■□□□ 1.42
SMPD1-208ENST00000533123 ATRNO75882 1429 aa23.94■■□□□ 1.42
SMPD1-208ENST00000533123 FANCIQ9NVI1 1328 aa23.94■■□□□ 1.42
SMPD1-208ENST00000533123 ZNF853P0CG23 659 aa23.94■■□□□ 1.42
SMPD1-208ENST00000533123 GNAI1P63096 354 aa23.94■■□□□ 1.42
SMPD1-208ENST00000533123 DDB1Q16531 1140 aa23.94■■□□□ 1.42
SMPD1-208ENST00000533123 MIS18AQ9NYP9 233 aa23.94■■□□□ 1.42
SMPD1-208ENST00000533123 KDM6AO15550 1401 aaPredicted RBP23.93■■□□□ 1.42
SMPD1-208ENST00000533123 VIRMAQ69YN4 1812 aaKnown RBP23.92■■□□□ 1.42
SMPD1-208ENST00000533123 DCAF5Q96JK2 942 aa23.92■■□□□ 1.42
SMPD1-208ENST00000533123 TSHZ2Q9NRE2 1034 aa23.92■■□□□ 1.42
SMPD1-208ENST00000533123 MBIPQ9NS73 344 aa23.92■■□□□ 1.42
SMPD1-208ENST00000533123 A0A0G2JS52 829 aa23.92■■□□□ 1.42
SMPD1-208ENST00000533123 HSP90AB1P08238 724 aaKnown RBP23.92■■□□□ 1.42
SMPD1-208ENST00000533123 GLI3P10071 1580 aa23.91■■□□□ 1.42
SMPD1-208ENST00000533123 TEFQ10587 303 aa23.91■■□□□ 1.42
SMPD1-208ENST00000533123 TNS2Q63HR2 1409 aa23.91■■□□□ 1.42
SMPD1-208ENST00000533123 CHL1O00533 1208 aa23.91■■□□□ 1.42
SMPD1-208ENST00000533123 LRRC37A3O60309 1634 aa23.91■■□□□ 1.42
SMPD1-208ENST00000533123 TAF7Q15545 349 aaPredicted RBP23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms