RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 RIPK4P57078 832 aa18.68■□□□□ 0.58
TRIM3-212ENST00000533064 AMOTQ4VCS5 1084 aa18.68■□□□□ 0.58
TRIM3-212ENST00000533064 NCBP3Q53F19 620 aaKnown RBP18.68■□□□□ 0.58
TRIM3-212ENST00000533064 PLEKHO1Q53GL0 409 aaPredicted RBP18.68■□□□□ 0.58
TRIM3-212ENST00000533064 BCL9LQ86UU0 1499 aa18.67■□□□□ 0.58
TRIM3-212ENST00000533064 AFF2P51816 1311 aa18.67■□□□□ 0.58
TRIM3-212ENST00000533064 MEGF6O75095 1541 aa18.67■□□□□ 0.58
TRIM3-212ENST00000533064 IL2RBP14784 551 aa18.66■□□□□ 0.58
TRIM3-212ENST00000533064 LMOD3Q0VAK6 560 aa18.66■□□□□ 0.58
TRIM3-212ENST00000533064 THRAP3Q9Y2W1 955 aaKnown RBP18.66■□□□□ 0.58
TRIM3-212ENST00000533064 CCDC27Q2M243 656 aa18.65■□□□□ 0.58
TRIM3-212ENST00000533064 MTHFSDQ2M296 383 aaKnown RBP18.65■□□□□ 0.58
TRIM3-212ENST00000533064 SPG7Q9UQ90 795 aa18.65■□□□□ 0.58
TRIM3-212ENST00000533064 SPATA31A1Q5TZJ5 1347 aa18.65■□□□□ 0.58
TRIM3-212ENST00000533064 VPS72Q15906 364 aa18.64■□□□□ 0.57
TRIM3-212ENST00000533064 SPATA31A5Q5VU36 1347 aa18.64■□□□□ 0.57
TRIM3-212ENST00000533064 SPATA31A7Q8IWB4 1347 aa18.64■□□□□ 0.57
TRIM3-212ENST00000533064 OVOS2A0A0G2JMS6 1433 aa18.64■□□□□ 0.57
TRIM3-212ENST00000533064 SHANK3Q9BYB0 1731 aa18.64■□□□□ 0.57
TRIM3-212ENST00000533064 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.63■□□□□ 0.57
TRIM3-212ENST00000533064 SCN11AQ9UI33 1791 aa18.63■□□□□ 0.57
TRIM3-212ENST00000533064 C1orf141Q5JVX7 400 aa18.63■□□□□ 0.57
TRIM3-212ENST00000533064 ZNF530Q6P9A1 599 aaPredicted RBP18.63■□□□□ 0.57
TRIM3-212ENST00000533064 RTF1Q92541 710 aaKnown RBP18.63■□□□□ 0.57
TRIM3-212ENST00000533064 WWC1Q8IX03 1113 aa18.62■□□□□ 0.57
TRIM3-212ENST00000533064 CDCA7Q9BWT1 371 aaPredicted RBP18.62■□□□□ 0.57
TRIM3-212ENST00000533064 MAP3K5Q99683 1374 aa18.61■□□□□ 0.57
TRIM3-212ENST00000533064 GNAT3A8MTJ3 354 aa18.61■□□□□ 0.57
TRIM3-212ENST00000533064 PDE3BQ13370 1112 aa18.61■□□□□ 0.57
TRIM3-212ENST00000533064 ZCRB1Q8TBF4 217 aaKnown RBP18.6■□□□□ 0.57
TRIM3-212ENST00000533064 TRPC5Q9UL62 973 aaPredicted RBP18.6■□□□□ 0.57
TRIM3-212ENST00000533064 TRIM35Q9UPQ4 493 aa18.6■□□□□ 0.57
TRIM3-212ENST00000533064 HTATSF1O43719 755 aaKnown RBP18.6■□□□□ 0.57
TRIM3-212ENST00000533064 CALD1Q05682 793 aaKnown RBP18.6■□□□□ 0.57
TRIM3-212ENST00000533064 GOLGA2Q08379 1002 aa18.6■□□□□ 0.57
TRIM3-212ENST00000533064 AKAP4Q5JQC9 854 aa18.6■□□□□ 0.57
TRIM3-212ENST00000533064 PHF23Q9BUL5 403 aaPredicted RBP18.6■□□□□ 0.57
TRIM3-212ENST00000533064 DISP2A7MBM2 1401 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 ZNF521Q96K83 1311 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 PCDH11XQ9BZA7 1347 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 PCDH11YQ9BZA8 1340 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 BARGINQ6ZT62 677 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 WDR63Q8IWG1 891 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 GTF3C3Q9Y5Q9 886 aa18.59■□□□□ 0.57
TRIM3-212ENST00000533064 IFNL2Q8IZJ0 200 aa18.58■□□□□ 0.57
TRIM3-212ENST00000533064 ATRNO75882 1429 aa18.58■□□□□ 0.56
TRIM3-212ENST00000533064 LRRC37A3O60309 1634 aa18.57■□□□□ 0.56
TRIM3-212ENST00000533064 GLI3P10071 1580 aa18.57■□□□□ 0.56
TRIM3-212ENST00000533064 ZNF772Q68DY9 489 aaPredicted RBP18.57■□□□□ 0.56
TRIM3-212ENST00000533064 EXOC5O00471 708 aa18.56■□□□□ 0.56
TRIM3-212ENST00000533064 GJD4Q96KN9 370 aaPredicted RBP18.56■□□□□ 0.56
TRIM3-212ENST00000533064 QTRT2Q9H974 415 aaKnown RBP18.56■□□□□ 0.56
TRIM3-212ENST00000533064 ADAMTS7Q9UKP4 1686 aa18.55■□□□□ 0.56
TRIM3-212ENST00000533064 HSP90AB1P08238 724 aaKnown RBP18.55■□□□□ 0.56
TRIM3-212ENST00000533064 MCM10Q7L590 875 aa18.55■□□□□ 0.56
TRIM3-212ENST00000533064 SIPA1L3O60292 1781 aaPredicted RBP18.55■□□□□ 0.56
TRIM3-212ENST00000533064 TNS2Q63HR2 1409 aa18.55■□□□□ 0.56
TRIM3-212ENST00000533064 E9PSI1 815 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 PHKG2P15735 406 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 DCTN1Q14203 1278 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 FAM98CQ17RN3 349 aaKnown RBP18.54■□□□□ 0.56
TRIM3-212ENST00000533064 IL16Q14005 1332 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 THSD7AQ9UPZ6 1657 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 A0A0G2JS52 829 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 MYT1Q01538 1121 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 DDB1Q16531 1140 aa18.54■□□□□ 0.56
TRIM3-212ENST00000533064 ITGB4P16144 1822 aa18.53■□□□□ 0.56
TRIM3-212ENST00000533064 CYP27B1O15528 508 aa18.53■□□□□ 0.56
TRIM3-212ENST00000533064 DDX54Q8TDD1 881 aaKnown RBP18.53■□□□□ 0.56
TRIM3-212ENST00000533064 MPRIPQ6WCQ1 1025 aa18.52■□□□□ 0.56
TRIM3-212ENST00000533064 CDCA7LQ96GN5 454 aa18.52■□□□□ 0.56
TRIM3-212ENST00000533064 THUMPD2Q9BTF0 503 aaKnown RBP18.52■□□□□ 0.56
TRIM3-212ENST00000533064 MYH16Q9H6N6 1097 aa18.52■□□□□ 0.56
TRIM3-212ENST00000533064 GNAI1P63096 354 aa18.51■□□□□ 0.55
TRIM3-212ENST00000533064 RNMTO43148 476 aaKnown RBP18.5■□□□□ 0.55
TRIM3-212ENST00000533064 SLFN5Q08AF3 891 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 TEFQ10587 303 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 DCAF5Q96JK2 942 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 LAS1LQ9Y4W2 734 aaKnown RBP18.5■□□□□ 0.55
TRIM3-212ENST00000533064 BRWD3Q6RI45 1802 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 CEMIPQ8WUJ3 1361 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 IL17REQ8NFR9 667 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 IFT57Q9NWB7 429 aa18.5■□□□□ 0.55
TRIM3-212ENST00000533064 LGR6Q9HBX8 967 aa18.49■□□□□ 0.55
TRIM3-212ENST00000533064 DOT1LQ8TEK3 1739 aa18.48■□□□□ 0.55
TRIM3-212ENST00000533064 CFAP44Q96MT7 982 aa18.48■□□□□ 0.55
TRIM3-212ENST00000533064 KDM3BQ7LBC6 1761 aa18.48■□□□□ 0.55
TRIM3-212ENST00000533064 TOGARAM1Q9Y4F4 1720 aa18.48■□□□□ 0.55
TRIM3-212ENST00000533064 ILDR1Q86SU0 546 aaPredicted RBP18.47■□□□□ 0.55
TRIM3-212ENST00000533064 SPINK5Q9NQ38 1064 aaPredicted RBP18.47■□□□□ 0.55
TRIM3-212ENST00000533064 KDM6AO15550 1401 aaPredicted RBP18.47■□□□□ 0.55
TRIM3-212ENST00000533064 RBM6P78332 1123 aaKnown RBP18.47■□□□□ 0.55
TRIM3-212ENST00000533064 NKX1-1Q15270 411 aaPredicted RBP18.47■□□□□ 0.55
TRIM3-212ENST00000533064 TAF7Q15545 349 aaPredicted RBP18.46■□□□□ 0.55
TRIM3-212ENST00000533064 DUSP27Q5VZP5 1158 aa18.46■□□□□ 0.55
TRIM3-212ENST00000533064 ONECUT3O60422 494 aaPredicted RBP18.45■□□□□ 0.54
TRIM3-212ENST00000533064 TRMT2AQ8IZ69 625 aaKnown RBP18.45■□□□□ 0.54
TRIM3-212ENST00000533064 MRC1P22897 1456 aa18.45■□□□□ 0.54
TRIM3-212ENST00000533064 ZNF853P0CG23 659 aa18.44■□□□□ 0.54
TRIM3-212ENST00000533064 BABAM1Q9NWV8 329 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms