RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 PTF1AQ7RTS3 328 aa20.98■□□□□ 0.95
CPSF1-210ENST00000532935 DDX54Q8TDD1 881 aaKnown RBP20.98■□□□□ 0.95
CPSF1-210ENST00000532935 RAPGEF4Q8WZA2 1011 aa20.98■□□□□ 0.95
CPSF1-210ENST00000532935 ZCRB1Q8TBF4 217 aaKnown RBP20.97■□□□□ 0.95
CPSF1-210ENST00000532935 PKD1L3Q7Z443 1732 aa20.97■□□□□ 0.95
CPSF1-210ENST00000532935 BTAF1O14981 1849 aa20.97■□□□□ 0.95
CPSF1-210ENST00000532935 DOT1LQ8TEK3 1739 aa20.96■□□□□ 0.95
CPSF1-210ENST00000532935 TATP17735 454 aaPredicted RBP20.96■□□□□ 0.95
CPSF1-210ENST00000532935 EIF4A2Q14240 407 aaKnown RBP20.95■□□□□ 0.94
CPSF1-210ENST00000532935 EYA1Q99502 592 aa20.95■□□□□ 0.94
CPSF1-210ENST00000532935 KCNQ2O43526 872 aa20.94■□□□□ 0.94
CPSF1-210ENST00000532935 CC2D1BQ5T0F9 858 aaKnown RBP20.94■□□□□ 0.94
CPSF1-210ENST00000532935 ACSBG1Q96GR2 724 aa20.94■□□□□ 0.94
CPSF1-210ENST00000532935 NPC1L1Q9UHC9 1359 aa20.94■□□□□ 0.94
CPSF1-210ENST00000532935 PLSCR1O15162 318 aa20.93■□□□□ 0.94
CPSF1-210ENST00000532935 SRCAPQ6ZRS2 3230 aa20.92■□□□□ 0.94
CPSF1-210ENST00000532935 PCDH11XQ9BZA7 1347 aa20.89■□□□□ 0.93
CPSF1-210ENST00000532935 PCDH11YQ9BZA8 1340 aa20.89■□□□□ 0.93
CPSF1-210ENST00000532935 IGSF1Q8N6C5 1336 aa20.88■□□□□ 0.93
CPSF1-210ENST00000532935 PSDA5PKW4 1024 aaPredicted RBP20.88■□□□□ 0.93
CPSF1-210ENST00000532935 MTHFSP49914 203 aa20.87■□□□□ 0.93
CPSF1-210ENST00000532935 CNGB1Q14028 1251 aaPredicted RBP20.87■□□□□ 0.93
CPSF1-210ENST00000532935 ITGB4P16144 1822 aa20.86■□□□□ 0.93
CPSF1-210ENST00000532935 R3HDM1Q15032 1099 aaKnown RBP20.86■□□□□ 0.93
CPSF1-210ENST00000532935 TOGARAM1Q9Y4F4 1720 aa20.86■□□□□ 0.93
CPSF1-210ENST00000532935 PROM2Q8N271 834 aa20.85■□□□□ 0.93
CPSF1-210ENST00000532935 CYP27B1O15528 508 aa20.84■□□□□ 0.93
CPSF1-210ENST00000532935 PRIM1P49642 420 aaKnown RBP20.84■□□□□ 0.93
CPSF1-210ENST00000532935 NBPF14Q5TI25 921 aa20.84■□□□□ 0.93
CPSF1-210ENST00000532935 SYTL4Q96C24 671 aaPredicted RBP20.84■□□□□ 0.93
CPSF1-210ENST00000532935 SPG7Q9UQ90 795 aa20.84■□□□□ 0.93
CPSF1-210ENST00000532935 PLEKHG2Q9H7P9 1386 aa20.84■□□□□ 0.93
CPSF1-210ENST00000532935 IL13P35225 146 aa20.83■□□□□ 0.93
CPSF1-210ENST00000532935 TXNRD1Q16881 649 aa20.83■□□□□ 0.93
CPSF1-210ENST00000532935 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.83■□□□□ 0.93
CPSF1-210ENST00000532935 LY75O60449 1722 aa20.83■□□□□ 0.92
CPSF1-210ENST00000532935 AEBP1Q8IUX7 1158 aa20.8■□□□□ 0.92
CPSF1-210ENST00000532935 LRP5O75197 1615 aa20.79■□□□□ 0.92
CPSF1-210ENST00000532935 KDRP35968 1356 aa20.79■□□□□ 0.92
CPSF1-210ENST00000532935 PAPPAQ13219 1627 aa20.78■□□□□ 0.92
CPSF1-210ENST00000532935 COL3A1P02461 1466 aaPredicted RBP20.78■□□□□ 0.92
CPSF1-210ENST00000532935 NKX1-1Q15270 411 aaPredicted RBP20.78■□□□□ 0.92
CPSF1-210ENST00000532935 SULT6B1Q6IMI4 303 aa20.78■□□□□ 0.92
CPSF1-210ENST00000532935 ANO8Q9HCE9 1232 aaPredicted RBP20.78■□□□□ 0.92
CPSF1-210ENST00000532935 DIAPH1O60610 1272 aaKnown RBP20.77■□□□□ 0.92
CPSF1-210ENST00000532935 PHKG2P15735 406 aa20.77■□□□□ 0.92
CPSF1-210ENST00000532935 IFNL2Q8IZJ0 200 aa20.77■□□□□ 0.92
CPSF1-210ENST00000532935 PLEKHO1Q53GL0 409 aaPredicted RBP20.76■□□□□ 0.91
CPSF1-210ENST00000532935 ZEB1P37275 1124 aaPredicted RBP20.75■□□□□ 0.91
CPSF1-210ENST00000532935 CASZ1Q86V15 1759 aa20.74■□□□□ 0.91
CPSF1-210ENST00000532935 AMOTQ4VCS5 1084 aa20.74■□□□□ 0.91
CPSF1-210ENST00000532935 MPRIPQ6WCQ1 1025 aa20.74■□□□□ 0.91
CPSF1-210ENST00000532935 VIRMAQ69YN4 1812 aaKnown RBP20.74■□□□□ 0.91
CPSF1-210ENST00000532935 SLC27A3Q5K4L6 730 aa20.73■□□□□ 0.91
CPSF1-210ENST00000532935 LRRC4BQ9NT99 713 aa20.73■□□□□ 0.91
CPSF1-210ENST00000532935 ZNF530Q6P9A1 599 aaPredicted RBP20.72■□□□□ 0.91
CPSF1-210ENST00000532935 STK32BQ9NY57 414 aa20.72■□□□□ 0.91
CPSF1-210ENST00000532935 HMOX1P09601 288 aa20.71■□□□□ 0.91
CPSF1-210ENST00000532935 PPP2R1AP30153 589 aa20.71■□□□□ 0.91
CPSF1-210ENST00000532935 SLC15A2Q16348 729 aa20.71■□□□□ 0.91
CPSF1-210ENST00000532935 TAF1LQ8IZX4 1826 aa20.71■□□□□ 0.91
CPSF1-210ENST00000532935 QSER1Q2KHR3 1735 aa20.7■□□□□ 0.9
CPSF1-210ENST00000532935 SCN11AQ9UI33 1791 aa20.7■□□□□ 0.9
CPSF1-210ENST00000532935 TUBGCP6Q96RT7 1819 aa20.7■□□□□ 0.9
CPSF1-210ENST00000532935 CFAP53Q96M91 514 aa20.7■□□□□ 0.9
CPSF1-210ENST00000532935 C5P01031 1676 aa20.7■□□□□ 0.9
CPSF1-210ENST00000532935 HSP90AB1P08238 724 aaKnown RBP20.69■□□□□ 0.9
CPSF1-210ENST00000532935 PIGBQ92521 554 aa20.69■□□□□ 0.9
CPSF1-210ENST00000532935 KCNQ4P56696 695 aa20.68■□□□□ 0.9
CPSF1-210ENST00000532935 TMOD3Q9NYL9 352 aa20.68■□□□□ 0.9
CPSF1-210ENST00000532935 CCNL1Q9UK58 526 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-210ENST00000532935 PALLDQ8WX93 1383 aa20.68■□□□□ 0.9
CPSF1-210ENST00000532935 U2SURPO15042 1029 aaKnown RBP20.67■□□□□ 0.9
CPSF1-210ENST00000532935 DDX10Q13206 875 aaKnown RBP20.67■□□□□ 0.9
CPSF1-210ENST00000532935 C1orf141Q5JVX7 400 aa20.67■□□□□ 0.9
CPSF1-210ENST00000532935 DCAF5Q96JK2 942 aa20.67■□□□□ 0.9
CPSF1-210ENST00000532935 KDM6AO15550 1401 aaPredicted RBP20.67■□□□□ 0.9
CPSF1-210ENST00000532935 ZNF827Q17R98 1081 aa20.66■□□□□ 0.9
CPSF1-210ENST00000532935 SMARCC1Q92922 1105 aaPredicted RBP20.66■□□□□ 0.9
CPSF1-210ENST00000532935 ERVV-2B6SEH9 535 aa20.65■□□□□ 0.9
CPSF1-210ENST00000532935 PDGFDQ9GZP0 370 aaPredicted RBP20.65■□□□□ 0.9
CPSF1-210ENST00000532935 AKT1S1Q96B36 256 aa20.64■□□□□ 0.89
CPSF1-210ENST00000532935 AKAP4Q5JQC9 854 aa20.63■□□□□ 0.89
CPSF1-210ENST00000532935 ASAP1Q9ULH1 1129 aa20.62■□□□□ 0.89
CPSF1-210ENST00000532935 NUDCQ9Y266 331 aa20.62■□□□□ 0.89
CPSF1-210ENST00000532935 MTHFSDQ2M296 383 aaKnown RBP20.61■□□□□ 0.89
CPSF1-210ENST00000532935 SPON1Q9HCB6 807 aa20.61■□□□□ 0.89
CPSF1-210ENST00000532935 C4BP0C0L5 1744 aa20.61■□□□□ 0.89
CPSF1-210ENST00000532935 ADAMTS7Q9UKP4 1686 aa20.61■□□□□ 0.89
CPSF1-210ENST00000532935 CABP4P57796 275 aa20.6■□□□□ 0.89
CPSF1-210ENST00000532935 ATG3Q9NT62 314 aa20.6■□□□□ 0.89
CPSF1-210ENST00000532935 ZNF831Q5JPB2 1677 aa20.59■□□□□ 0.89
CPSF1-210ENST00000532935 TFCP2L1Q9NZI6 479 aa20.59■□□□□ 0.89
CPSF1-210ENST00000532935 LOC102724428A0A0B4J2F2 783 aa20.58■□□□□ 0.89
CPSF1-210ENST00000532935 ZBTB7AO95365 584 aa20.58■□□□□ 0.89
CPSF1-210ENST00000532935 HMGB2P26583 209 aaKnown RBP20.58■□□□□ 0.89
CPSF1-210ENST00000532935 SIK1P57059 783 aa20.58■□□□□ 0.89
CPSF1-210ENST00000532935 RALBP1Q15311 655 aa20.58■□□□□ 0.89
CPSF1-210ENST00000532935 RSPH6AQ9H0K4 717 aa20.58■□□□□ 0.89
CPSF1-210ENST00000532935 U2AF1L5P0DN76 240 aaPredicted RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms