RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 WWC3Q9ULE0 1092 aa13.03□□□□□ -0.32
NEDD8-206ENST00000531430 ABCC6O95255 1503 aa13.03□□□□□ -0.32
NEDD8-206ENST00000531430 LTN1O94822 1766 aa13.02□□□□□ -0.32
NEDD8-206ENST00000531430 HOXC9P31274 260 aa13.02□□□□□ -0.33
NEDD8-206ENST00000531430 IFFO2Q5TF58 517 aa13.02□□□□□ -0.33
NEDD8-206ENST00000531430 RAPGEF4Q8WZA2 1011 aa13.01□□□□□ -0.33
NEDD8-206ENST00000531430 MAP3K19Q56UN5 1328 aa13.01□□□□□ -0.33
NEDD8-206ENST00000531430 ANKRD36BQ8N2N9 1353 aa13.01□□□□□ -0.33
NEDD8-206ENST00000531430 USP47Q96K76 1375 aa13.01□□□□□ -0.33
NEDD8-206ENST00000531430 EDC4Q6P2E9 1401 aaKnown RBP13□□□□□ -0.33
NEDD8-206ENST00000531430 A0A1W2PP64 1363 aa13□□□□□ -0.33
NEDD8-206ENST00000531430 RRS1Q15050 365 aaKnown RBP13□□□□□ -0.33
NEDD8-206ENST00000531430 MPRIPQ6WCQ1 1025 aa13□□□□□ -0.33
NEDD8-206ENST00000531430 CD163L1Q9NR16 1453 aa12.99□□□□□ -0.33
NEDD8-206ENST00000531430 TATP17735 454 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-206ENST00000531430 NBPF6Q5VWK0 638 aa12.99□□□□□ -0.33
NEDD8-206ENST00000531430 NBPF4Q96M43 638 aa12.99□□□□□ -0.33
NEDD8-206ENST00000531430 GPBP1L1Q9HC44 474 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-206ENST00000531430 MON2Q7Z3U7 1717 aa12.99□□□□□ -0.33
NEDD8-206ENST00000531430 PAPPAQ13219 1627 aa12.99□□□□□ -0.33
NEDD8-206ENST00000531430 GGNBP2Q9H3C7 697 aa12.98□□□□□ -0.33
NEDD8-206ENST00000531430 ST20-MTHFSA0A0A6YYL1 179 aa12.97□□□□□ -0.33
NEDD8-206ENST00000531430 PHF14O94880 888 aa12.97□□□□□ -0.33
NEDD8-206ENST00000531430 SMIM5Q71RC9 77 aa12.97□□□□□ -0.33
NEDD8-206ENST00000531430 GOLGB1Q14789 3259 aaKnown RBP12.96□□□□□ -0.33
NEDD8-206ENST00000531430 FLAD1Q8NFF5 587 aa12.96□□□□□ -0.33
NEDD8-206ENST00000531430 AK7Q96M32 723 aa12.96□□□□□ -0.33
NEDD8-206ENST00000531430 TONSLQ96HA7 1378 aa12.95□□□□□ -0.34
NEDD8-206ENST00000531430 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
NEDD8-206ENST00000531430 CD2APQ9Y5K6 639 aa12.95□□□□□ -0.34
NEDD8-206ENST00000531430 PPM1GO15355 546 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-206ENST00000531430 HSP90AB2PQ58FF8 381 aa12.94□□□□□ -0.34
NEDD8-206ENST00000531430 ATP10DQ9P241 1426 aa12.94□□□□□ -0.34
NEDD8-206ENST00000531430 NSD2O96028 1365 aa12.94□□□□□ -0.34
NEDD8-206ENST00000531430 FYB1O15117 783 aa12.93□□□□□ -0.34
NEDD8-206ENST00000531430 HMGB2P26583 209 aaKnown RBP12.93□□□□□ -0.34
NEDD8-206ENST00000531430 MEGF6O75095 1541 aa12.93□□□□□ -0.34
NEDD8-206ENST00000531430 RGPD2P0DJD1 1756 aa12.92□□□□□ -0.34
NEDD8-206ENST00000531430 DOT1LQ8TEK3 1739 aa12.92□□□□□ -0.34
NEDD8-206ENST00000531430 PALLDQ8WX93 1383 aa12.92□□□□□ -0.34
NEDD8-206ENST00000531430 CGNL1Q0VF96 1302 aa12.91□□□□□ -0.34
NEDD8-206ENST00000531430 SMG6Q86US8 1419 aaKnown RBP12.91□□□□□ -0.34
NEDD8-206ENST00000531430 TUBGCP6Q96RT7 1819 aa12.91□□□□□ -0.34
NEDD8-206ENST00000531430 SMARCC1Q92922 1105 aaPredicted RBP12.91□□□□□ -0.34
NEDD8-206ENST00000531430 CEP350Q5VT06 3117 aa12.91□□□□□ -0.34
NEDD8-206ENST00000531430 IGSF1Q8N6C5 1336 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 PCDH11XQ9BZA7 1347 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 PCDH11YQ9BZA8 1340 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.9□□□□□ -0.34
NEDD8-206ENST00000531430 SLC24A1O60721 1099 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 HSPA6P17066 643 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 TESK2Q96S53 571 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 QSER1Q2KHR3 1735 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 SHANK3Q9BYB0 1731 aa12.9□□□□□ -0.34
NEDD8-206ENST00000531430 USP54Q70EL1 1684 aa12.89□□□□□ -0.35
NEDD8-206ENST00000531430 LY75O60449 1722 aa12.89□□□□□ -0.35
NEDD8-206ENST00000531430 CYP27B1O15528 508 aa12.89□□□□□ -0.35
NEDD8-206ENST00000531430 TMF1P82094 1093 aa12.89□□□□□ -0.35
NEDD8-206ENST00000531430 PIGBQ92521 554 aa12.89□□□□□ -0.35
NEDD8-206ENST00000531430 AMIGO3Q86WK7 504 aa12.88□□□□□ -0.35
NEDD8-206ENST00000531430 FAM208AQ9UK61 1670 aaKnown RBP12.87□□□□□ -0.35
NEDD8-206ENST00000531430 GNPATO15228 680 aa12.87□□□□□ -0.35
NEDD8-206ENST00000531430 ATP6V1AP38606 617 aa12.87□□□□□ -0.35
NEDD8-206ENST00000531430 SPG7Q9UQ90 795 aa12.87□□□□□ -0.35
NEDD8-206ENST00000531430 LOC102724428A0A0B4J2F2 783 aa12.86□□□□□ -0.35
NEDD8-206ENST00000531430 SIK1P57059 783 aa12.86□□□□□ -0.35
NEDD8-206ENST00000531430 LINC00116Q8NCU8 138 aa12.86□□□□□ -0.35
NEDD8-206ENST00000531430 TMOD3Q9NYL9 352 aa12.86□□□□□ -0.35
NEDD8-206ENST00000531430 BCS1LQ9Y276 419 aa12.86□□□□□ -0.35
NEDD8-206ENST00000531430 EMILIN1Q9Y6C2 1016 aa12.86□□□□□ -0.35
NEDD8-206ENST00000531430 COL24A1Q17RW2 1714 aa12.85□□□□□ -0.35
NEDD8-206ENST00000531430 RTL1A6NKG5 1358 aa12.85□□□□□ -0.35
NEDD8-206ENST00000531430 INSRP06213 1382 aa12.85□□□□□ -0.35
NEDD8-206ENST00000531430 ARHGAP27Q6ZUM4 889 aa12.85□□□□□ -0.35
NEDD8-206ENST00000531430 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
NEDD8-206ENST00000531430 ASAP1Q9ULH1 1129 aa12.85□□□□□ -0.35
NEDD8-206ENST00000531430 A0A0G2JLW4 131 aa12.84□□□□□ -0.35
NEDD8-206ENST00000531430 MMP10P09238 476 aa12.84□□□□□ -0.35
NEDD8-206ENST00000531430 RBM42Q9BTD8 480 aaKnown RBP12.84□□□□□ -0.35
NEDD8-206ENST00000531430 FLT4P35916 1363 aa12.83□□□□□ -0.36
NEDD8-206ENST00000531430 SSFA2P28290 1259 aa12.83□□□□□ -0.36
NEDD8-206ENST00000531430 ITPK1Q13572 414 aa12.83□□□□□ -0.36
NEDD8-206ENST00000531430 TRAPPC3LQ5T215 181 aa12.83□□□□□ -0.36
NEDD8-206ENST00000531430 C5P01031 1676 aa12.83□□□□□ -0.36
NEDD8-206ENST00000531430 KIF3CO14782 793 aa12.82□□□□□ -0.36
NEDD8-206ENST00000531430 TNNT2P45379 298 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-206ENST00000531430 CDCA8Q53HL2 280 aa12.82□□□□□ -0.36
NEDD8-206ENST00000531430 IFNL2Q8IZJ0 200 aa12.82□□□□□ -0.36
NEDD8-206ENST00000531430 EYA1Q99502 592 aa12.82□□□□□ -0.36
NEDD8-206ENST00000531430 FCHSD2O94868 740 aa12.81□□□□□ -0.36
NEDD8-206ENST00000531430 NKX1-1Q15270 411 aaPredicted RBP12.81□□□□□ -0.36
NEDD8-206ENST00000531430 CARD14Q9BXL6 1004 aa12.81□□□□□ -0.36
NEDD8-206ENST00000531430 RTCBQ9Y3I0 505 aaKnown RBP12.81□□□□□ -0.36
NEDD8-206ENST00000531430 C4BP0C0L5 1744 aa12.8□□□□□ -0.36
NEDD8-206ENST00000531430 APLP1P51693 650 aa12.8□□□□□ -0.36
NEDD8-206ENST00000531430 C16orf71Q8IYS4 520 aaPredicted RBP12.8□□□□□ -0.36
NEDD8-206ENST00000531430 ATG3Q9NT62 314 aa12.8□□□□□ -0.36
NEDD8-206ENST00000531430 NSD3Q9BZ95 1437 aa12.79□□□□□ -0.36
NEDD8-206ENST00000531430 PHKG2P15735 406 aa12.79□□□□□ -0.36
NEDD8-206ENST00000531430 DPEP1P16444 411 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms