RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 TRIM50Q86XT4 487 aa9.47□□□□□ -0.89
CD44-231ENST00000531110 OSBPL3Q9H4L5 887 aa9.47□□□□□ -0.89
CD44-231ENST00000531110 NOD1Q9Y239 953 aa9.47□□□□□ -0.89
CD44-231ENST00000531110 UPP2O95045 317 aa9.46□□□□□ -0.9
CD44-231ENST00000531110 ADD1P35611 737 aaKnown RBP9.46□□□□□ -0.9
CD44-231ENST00000531110 NCOA4Q13772 614 aa9.46□□□□□ -0.9
CD44-231ENST00000531110 MRPL14Q6P1L8 145 aaKnown RBP9.46□□□□□ -0.9
CD44-231ENST00000531110 ATP5J2-PTCD1G3V325 749 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 LCE2BO14633 110 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 GNRH1P01148 92 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 CBLBQ13191 982 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 OXLD1Q5BKU9 147 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 CFAP70Q5T0N1 1121 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 LINC00528Q8N1L1 170 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 C1orf115Q9H7X2 142 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 ATP13A2Q9NQ11 1180 aa9.45□□□□□ -0.9
CD44-231ENST00000531110 ARID3CA6NKF2 412 aa9.44□□□□□ -0.9
CD44-231ENST00000531110 WASLO00401 505 aaPredicted RBP9.44□□□□□ -0.9
CD44-231ENST00000531110 ST8SIA5O15466 376 aa9.44□□□□□ -0.9
CD44-231ENST00000531110 PTGIRP43119 386 aa9.44□□□□□ -0.9
CD44-231ENST00000531110 SCARF1Q14162 830 aa9.44□□□□□ -0.9
CD44-231ENST00000531110 SPINT1O43278 529 aa9.43□□□□□ -0.9
CD44-231ENST00000531110 ATP1A2P50993 1020 aa9.43□□□□□ -0.9
CD44-231ENST00000531110 TRIM46Q7Z4K8 759 aa9.43□□□□□ -0.9
CD44-231ENST00000531110 KDF1Q8NAX2 398 aaPredicted RBP9.43□□□□□ -0.9
CD44-231ENST00000531110 KIFC2Q96AC6 838 aa9.43□□□□□ -0.9
CD44-231ENST00000531110 SENP2Q9HC62 589 aa9.43□□□□□ -0.9
CD44-231ENST00000531110 CCDC82Q8N4S0 544 aa9.42□□□□□ -0.9
CD44-231ENST00000531110 GPC1P35052 558 aa9.41□□□□□ -0.9
CD44-231ENST00000531110 PCDHGA11Q9Y5H2 935 aa9.41□□□□□ -0.9
CD44-231ENST00000531110 LMOD1P29536 600 aaPredicted RBP9.4□□□□□ -0.9
CD44-231ENST00000531110 GTF2IP78347 998 aa9.4□□□□□ -0.9
CD44-231ENST00000531110 CLN3Q13286 438 aa9.4□□□□□ -0.9
CD44-231ENST00000531110 ESCO1Q5FWF5 840 aa9.4□□□□□ -0.9
CD44-231ENST00000531110 KANK4Q5T7N3 995 aaPredicted RBP9.4□□□□□ -0.9
CD44-231ENST00000531110 DEPDC4Q8N2C3 294 aa9.4□□□□□ -0.9
CD44-231ENST00000531110 LARGE2Q8N3Y3 721 aa9.4□□□□□ -0.9
CD44-231ENST00000531110 MKRN1Q9UHC7 482 aaKnown RBP9.4□□□□□ -0.9
CD44-231ENST00000531110 FAM196BA6NMK8 535 aa9.39□□□□□ -0.91
CD44-231ENST00000531110 BMP1P13497 986 aa9.39□□□□□ -0.91
CD44-231ENST00000531110 VRTNQ9H8Y1 702 aa9.39□□□□□ -0.91
CD44-231ENST00000531110 BMP2P12643 396 aa9.38□□□□□ -0.91
CD44-231ENST00000531110 SRPK2P78362 688 aaKnown RBP9.38□□□□□ -0.91
CD44-231ENST00000531110 SIX5Q8N196 739 aa9.38□□□□□ -0.91
CD44-231ENST00000531110 TRIM47Q96LD4 638 aa9.38□□□□□ -0.91
CD44-231ENST00000531110 ZFP42Q96MM3 310 aa9.38□□□□□ -0.91
CD44-231ENST00000531110 DACH1Q9UI36 760 aa9.38□□□□□ -0.91
CD44-231ENST00000531110 A0A1W2PRU2 124 aa9.37□□□□□ -0.91
CD44-231ENST00000531110 SUPT5HO00267 1087 aaKnown RBP9.37□□□□□ -0.91
CD44-231ENST00000531110 PPP1R15AO75807 674 aaPredicted RBP9.37□□□□□ -0.91
CD44-231ENST00000531110 RELBQ01201 579 aa9.37□□□□□ -0.91
CD44-231ENST00000531110 PBXIP1Q96AQ6 731 aa9.37□□□□□ -0.91
CD44-231ENST00000531110 XAGE2Q96GT9 111 aa9.37□□□□□ -0.91
CD44-231ENST00000531110 AGBL1Q96MI9 1066 aa9.37□□□□□ -0.91
CD44-231ENST00000531110 PURBQ96QR8 312 aaKnown RBP9.37□□□□□ -0.91
CD44-231ENST00000531110 ESYT1Q9BSJ8 1104 aa9.37□□□□□ -0.91
CD44-231ENST00000531110 DNAAF2Q9NVR5 837 aaKnown RBP9.37□□□□□ -0.91
CD44-231ENST00000531110 SOS2Q07890 1332 aaPredicted RBP9.36□□□□□ -0.91
CD44-231ENST00000531110 M0R2N6 131 aa9.36□□□□□ -0.91
CD44-231ENST00000531110 RNF144AP50876 292 aaPredicted RBP9.36□□□□□ -0.91
CD44-231ENST00000531110 SCNN1DP51172 638 aa9.36□□□□□ -0.91
CD44-231ENST00000531110 CLDN10P78369 228 aa9.36□□□□□ -0.91
CD44-231ENST00000531110 OGFOD1Q8N543 542 aa9.36□□□□□ -0.91
CD44-231ENST00000531110 HRH3Q9Y5N1 445 aa9.36□□□□□ -0.91
CD44-231ENST00000531110 INHAP05111 366 aa9.35□□□□□ -0.91
CD44-231ENST00000531110 GDF10P55107 478 aa9.35□□□□□ -0.91
CD44-231ENST00000531110 ELOAQ14241 798 aaKnown RBP9.35□□□□□ -0.91
CD44-231ENST00000531110 LARP1Q6PKG0 1096 aaKnown RBP9.35□□□□□ -0.91
CD44-231ENST00000531110 SLC4A9Q96Q91 983 aa9.35□□□□□ -0.91
CD44-231ENST00000531110 ETNK1Q9HBU6 452 aa9.35□□□□□ -0.91
CD44-231ENST00000531110 ARHGEF10LQ9HCE6 1279 aa9.35□□□□□ -0.91
CD44-231ENST00000531110 ZBTB7BO15156 539 aaPredicted RBP9.34□□□□□ -0.91
CD44-231ENST00000531110 RASA1P20936 1047 aa9.34□□□□□ -0.91
CD44-231ENST00000531110 PTK7Q13308 1070 aa9.34□□□□□ -0.91
CD44-231ENST00000531110 C6orf118Q5T5N4 469 aa9.34□□□□□ -0.91
CD44-231ENST00000531110 CNKSR1Q969H4 720 aa9.34□□□□□ -0.91
CD44-231ENST00000531110 NLRP3Q96P20 1036 aa9.34□□□□□ -0.91
CD44-231ENST00000531110 TTLL8A6PVC2 850 aa9.33□□□□□ -0.92
CD44-231ENST00000531110 TMEM229AB2RXF0 380 aa9.33□□□□□ -0.92
CD44-231ENST00000531110 BACH1O14867 736 aa9.33□□□□□ -0.92
CD44-231ENST00000531110 ATG7O95352 703 aa9.33□□□□□ -0.92
CD44-231ENST00000531110 IL2RAP01589 272 aa9.33□□□□□ -0.92
CD44-231ENST00000531110 INSM2Q96T92 566 aaPredicted RBP9.33□□□□□ -0.92
CD44-231ENST00000531110 ZNF395Q9H8N7 513 aaPredicted RBP9.33□□□□□ -0.92
CD44-231ENST00000531110 GMPR2Q9P2T1 348 aaKnown RBP9.33□□□□□ -0.92
CD44-231ENST00000531110 USP17L15C9J2P7 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L10C9JJH3 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L13C9JLJ4 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L12C9JPN9 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L11C9JVI0 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L21D6R901 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L18D6R9N7 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L22D6RA61 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L17D6RBQ6 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L19D6RCP7 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L20D6RJB6 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 DKK1O94907 266 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 PSME1Q06323 249 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 USP17L24Q0WX57 530 aa9.32□□□□□ -0.92
CD44-231ENST00000531110 CCDC102BQ68D86 513 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms