RNA–Protein interactions for RNA: ENST00000530521.1

USP35-205, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 2

Gene USP35, Length 598 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-205ENST00000530521 SLC16A10Q8TF71 515 aa12.3□□□□□ -0.44
USP35-205ENST00000530521 IP6K1Q92551 441 aa12.3□□□□□ -0.44
USP35-205ENST00000530521 COL24A1Q17RW2 1714 aa12.3□□□□□ -0.44
USP35-205ENST00000530521 QSER1Q2KHR3 1735 aa12.29□□□□□ -0.44
USP35-205ENST00000530521 SLC27A3Q5K4L6 730 aa12.29□□□□□ -0.44
USP35-205ENST00000530521 HDGFL2Q7Z4V5 671 aaPredicted RBP12.29□□□□□ -0.44
USP35-205ENST00000530521 COL23A1Q86Y22 540 aaPredicted RBP12.29□□□□□ -0.44
USP35-205ENST00000530521 TIMELESSQ9UNS1 1208 aa12.29□□□□□ -0.44
USP35-205ENST00000530521 DOT1LQ8TEK3 1739 aa12.28□□□□□ -0.44
USP35-205ENST00000530521 SHANK3Q9BYB0 1731 aa12.28□□□□□ -0.44
USP35-205ENST00000530521 LY75O60449 1722 aa12.28□□□□□ -0.44
USP35-205ENST00000530521 USP54Q70EL1 1684 aa12.27□□□□□ -0.45
USP35-205ENST00000530521 IFFO2Q5TF58 517 aa12.27□□□□□ -0.45
USP35-205ENST00000530521 SMIM5Q71RC9 77 aa12.27□□□□□ -0.45
USP35-205ENST00000530521 CCNL1Q9UK58 526 aaPredicted RBP12.27□□□□□ -0.45
USP35-205ENST00000530521 WWC3Q9ULE0 1092 aa12.27□□□□□ -0.45
USP35-205ENST00000530521 USHBP1Q8N6Y0 703 aa12.26□□□□□ -0.45
USP35-205ENST00000530521 ZCRB1Q8TBF4 217 aaKnown RBP12.26□□□□□ -0.45
USP35-205ENST00000530521 CARD11Q9BXL7 1154 aa12.26□□□□□ -0.45
USP35-205ENST00000530521 HOXC9P31274 260 aa12.25□□□□□ -0.45
USP35-205ENST00000530521 AMPHP49418 695 aa12.25□□□□□ -0.45
USP35-205ENST00000530521 ZNF526Q8TF50 670 aaPredicted RBP12.25□□□□□ -0.45
USP35-205ENST00000530521 MAP3K19Q56UN5 1328 aa12.25□□□□□ -0.45
USP35-205ENST00000530521 A0A1W2PP64 1363 aa12.25□□□□□ -0.45
USP35-205ENST00000530521 NSD2O96028 1365 aa12.25□□□□□ -0.45
USP35-205ENST00000530521 NBPF6Q5VWK0 638 aa12.24□□□□□ -0.45
USP35-205ENST00000530521 ANKRD36BQ8N2N9 1353 aa12.24□□□□□ -0.45
USP35-205ENST00000530521 NBPF4Q96M43 638 aa12.24□□□□□ -0.45
USP35-205ENST00000530521 TERF2IPQ9NYB0 399 aa12.24□□□□□ -0.45
USP35-205ENST00000530521 EDC4Q6P2E9 1401 aaKnown RBP12.23□□□□□ -0.45
USP35-205ENST00000530521 TONSLQ96HA7 1378 aa12.23□□□□□ -0.45
USP35-205ENST00000530521 GRIN3BO60391 1043 aa12.23□□□□□ -0.45
USP35-205ENST00000530521 RRS1Q15050 365 aaKnown RBP12.23□□□□□ -0.45
USP35-205ENST00000530521 FAM208AQ9UK61 1670 aaKnown RBP12.22□□□□□ -0.45
USP35-205ENST00000530521 AMIGO3Q86WK7 504 aa12.22□□□□□ -0.45
USP35-205ENST00000530521 MEGF6O75095 1541 aa12.21□□□□□ -0.45
USP35-205ENST00000530521 TAF1LQ8IZX4 1826 aa12.21□□□□□ -0.45
USP35-205ENST00000530521 COG3Q96JB2 828 aa12.21□□□□□ -0.45
USP35-205ENST00000530521 ATP10DQ9P241 1426 aa12.2□□□□□ -0.46
USP35-205ENST00000530521 USP47Q96K76 1375 aa12.2□□□□□ -0.46
USP35-205ENST00000530521 MPRIPQ6WCQ1 1025 aa12.2□□□□□ -0.46
USP35-205ENST00000530521 ITGB4P16144 1822 aa12.2□□□□□ -0.46
USP35-205ENST00000530521 C5P01031 1676 aa12.19□□□□□ -0.46
USP35-205ENST00000530521 GGNBP2Q9H3C7 697 aa12.19□□□□□ -0.46
USP35-205ENST00000530521 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
USP35-205ENST00000530521 ST20-MTHFSA0A0A6YYL1 179 aa12.18□□□□□ -0.46
USP35-205ENST00000530521 PHF14O94880 888 aa12.18□□□□□ -0.46
USP35-205ENST00000530521 HSP90AB2PQ58FF8 381 aa12.18□□□□□ -0.46
USP35-205ENST00000530521 FYB1O15117 783 aa12.17□□□□□ -0.46
USP35-205ENST00000530521 RAPGEF4Q8WZA2 1011 aa12.17□□□□□ -0.46
USP35-205ENST00000530521 CD2APQ9Y5K6 639 aa12.17□□□□□ -0.46
USP35-205ENST00000530521 TATP17735 454 aaPredicted RBP12.16□□□□□ -0.46
USP35-205ENST00000530521 TESK2Q96S53 571 aa12.16□□□□□ -0.46
USP35-205ENST00000530521 CYP27B1O15528 508 aa12.15□□□□□ -0.46
USP35-205ENST00000530521 UBR3Q6ZT12 1888 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 IGSF1Q8N6C5 1336 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 HSPA6P17066 643 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 PIGBQ92521 554 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 AK7Q96M32 723 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 PUS7Q96PZ0 661 aaKnown RBP12.14□□□□□ -0.47
USP35-205ENST00000530521 PALLDQ8WX93 1383 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 C4BP0C0L5 1744 aa12.14□□□□□ -0.47
USP35-205ENST00000530521 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.13□□□□□ -0.47
USP35-205ENST00000530521 FLAD1Q8NFF5 587 aa12.13□□□□□ -0.47
USP35-205ENST00000530521 TOGARAM1Q9Y4F4 1720 aa12.13□□□□□ -0.47
USP35-205ENST00000530521 N4BP2Q86UW6 1770 aaPredicted RBP12.13□□□□□ -0.47
USP35-205ENST00000530521 LINC00116Q8NCU8 138 aa12.12□□□□□ -0.47
USP35-205ENST00000530521 ADCY9O60503 1353 aa12.11□□□□□ -0.47
USP35-205ENST00000530521 KIF3CO14782 793 aa12.11□□□□□ -0.47
USP35-205ENST00000530521 PPM1GO15355 546 aaPredicted RBP12.11□□□□□ -0.47
USP35-205ENST00000530521 ASAP1Q9ULH1 1129 aa12.11□□□□□ -0.47
USP35-205ENST00000530521 CGNL1Q0VF96 1302 aa12.11□□□□□ -0.47
USP35-205ENST00000530521 PCDH11XQ9BZA7 1347 aa12.11□□□□□ -0.47
USP35-205ENST00000530521 PCDH11YQ9BZA8 1340 aa12.11□□□□□ -0.47
USP35-205ENST00000530521 MAP2P11137 1827 aaKnown RBP12.1□□□□□ -0.47
USP35-205ENST00000530521 ITPK1Q13572 414 aa12.1□□□□□ -0.47
USP35-205ENST00000530521 EMILIN1Q9Y6C2 1016 aa12.1□□□□□ -0.47
USP35-205ENST00000530521 LOC102724428A0A0B4J2F2 783 aa12.09□□□□□ -0.47
USP35-205ENST00000530521 A0A0G2JLW4 131 aa12.09□□□□□ -0.47
USP35-205ENST00000530521 SIK1P57059 783 aa12.09□□□□□ -0.47
USP35-205ENST00000530521 SMARCC1Q92922 1105 aaPredicted RBP12.09□□□□□ -0.47
USP35-205ENST00000530521 INSRP06213 1382 aa12.08□□□□□ -0.48
USP35-205ENST00000530521 ATP6V1AP38606 617 aa12.08□□□□□ -0.48
USP35-205ENST00000530521 CARD14Q9BXL6 1004 aa12.08□□□□□ -0.48
USP35-205ENST00000530521 KIF20BQ96Q89 1820 aa12.08□□□□□ -0.48
USP35-205ENST00000530521 SMG6Q86US8 1419 aaKnown RBP12.08□□□□□ -0.48
USP35-205ENST00000530521 RTL1A6NKG5 1358 aa12.07□□□□□ -0.48
USP35-205ENST00000530521 GNPATO15228 680 aa12.07□□□□□ -0.48
USP35-205ENST00000530521 MMP10P09238 476 aa12.07□□□□□ -0.48
USP35-205ENST00000530521 ARHGAP27Q6ZUM4 889 aa12.07□□□□□ -0.48
USP35-205ENST00000530521 BCS1LQ9Y276 419 aa12.07□□□□□ -0.48
USP35-205ENST00000530521 SSFA2P28290 1259 aa12.06□□□□□ -0.48
USP35-205ENST00000530521 HTRA3P83110 453 aa12.06□□□□□ -0.48
USP35-205ENST00000530521 NKX1-1Q15270 411 aaPredicted RBP12.06□□□□□ -0.48
USP35-205ENST00000530521 DNAJC5GQ8N7S2 189 aa12.06□□□□□ -0.48
USP35-205ENST00000530521 EYA1Q99502 592 aa12.06□□□□□ -0.48
USP35-205ENST00000530521 ATG3Q9NT62 314 aa12.06□□□□□ -0.48
USP35-205ENST00000530521 NMRK2Q9NPI5 230 aa12.05□□□□□ -0.48
USP35-205ENST00000530521 TMOD3Q9NYL9 352 aa12.05□□□□□ -0.48
USP35-205ENST00000530521 SPG7Q9UQ90 795 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms