RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 PTF1AQ7RTS3 328 aa12.6□□□□□ -0.39
SSBP3-212ENST00000528930 PRDM11Q9NQV5 511 aa12.6□□□□□ -0.39
SSBP3-212ENST00000528930 BCL9O00512 1426 aa12.6□□□□□ -0.39
SSBP3-212ENST00000528930 GSE1Q14687 1217 aa12.59□□□□□ -0.39
SSBP3-212ENST00000528930 PLEKHH1Q9ULM0 1364 aa12.58□□□□□ -0.4
SSBP3-212ENST00000528930 GOLGA2Q08379 1002 aa12.58□□□□□ -0.4
SSBP3-212ENST00000528930 MKRN3Q13064 507 aaKnown RBP12.58□□□□□ -0.4
SSBP3-212ENST00000528930 TXNRD1Q16881 649 aa12.58□□□□□ -0.4
SSBP3-212ENST00000528930 NHSQ6T4R5 1651 aa12.57□□□□□ -0.4
SSBP3-212ENST00000528930 KIAA0232Q92628 1395 aa12.57□□□□□ -0.4
SSBP3-212ENST00000528930 ZNF467Q7Z7K2 595 aaPredicted RBP12.57□□□□□ -0.4
SSBP3-212ENST00000528930 TOMM70O94826 608 aa12.56□□□□□ -0.4
SSBP3-212ENST00000528930 WAPLQ7Z5K2 1190 aa12.56□□□□□ -0.4
SSBP3-212ENST00000528930 TCP11L2Q8N4U5 519 aa12.56□□□□□ -0.4
SSBP3-212ENST00000528930 MPHOSPH9Q99550 1183 aa12.56□□□□□ -0.4
SSBP3-212ENST00000528930 STRN4Q9NRL3 753 aa12.56□□□□□ -0.4
SSBP3-212ENST00000528930 USP35Q9P2H5 1018 aa12.56□□□□□ -0.4
SSBP3-212ENST00000528930 CICQ96RK0 1608 aaPredicted RBP12.55□□□□□ -0.4
SSBP3-212ENST00000528930 SNPHO15079 494 aa12.55□□□□□ -0.4
SSBP3-212ENST00000528930 THRAP3Q9Y2W1 955 aaKnown RBP12.55□□□□□ -0.4
SSBP3-212ENST00000528930 VGFO15240 615 aaPredicted RBP12.54□□□□□ -0.4
SSBP3-212ENST00000528930 PSEN1P49768 467 aa12.54□□□□□ -0.4
SSBP3-212ENST00000528930 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
SSBP3-212ENST00000528930 TMEM121BQ9BXQ6 578 aaPredicted RBP12.54□□□□□ -0.4
SSBP3-212ENST00000528930 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.54□□□□□ -0.4
SSBP3-212ENST00000528930 RAB3GAP2Q9H2M9 1393 aa12.54□□□□□ -0.4
SSBP3-212ENST00000528930 ANKARQ7Z5J8 1434 aa12.54□□□□□ -0.4
SSBP3-212ENST00000528930 HTRA3P83110 453 aa12.53□□□□□ -0.4
SSBP3-212ENST00000528930 ACIN1Q9UKV3 1341 aaKnown RBP12.53□□□□□ -0.4
SSBP3-212ENST00000528930 ABCC11Q96J66 1382 aa12.53□□□□□ -0.4
SSBP3-212ENST00000528930 BTAF1O14981 1849 aa12.53□□□□□ -0.4
SSBP3-212ENST00000528930 CHRNA2Q15822 529 aa12.52□□□□□ -0.41
SSBP3-212ENST00000528930 FAM161AQ3B820 660 aa12.52□□□□□ -0.41
SSBP3-212ENST00000528930 HSPA1AP0DMV8 641 aaKnown RBP12.51□□□□□ -0.41
SSBP3-212ENST00000528930 HSPA1BP0DMV9 641 aaKnown RBP12.51□□□□□ -0.41
SSBP3-212ENST00000528930 LARP1Q6PKG0 1096 aaKnown RBP12.51□□□□□ -0.41
SSBP3-212ENST00000528930 SPNS2Q8IVW8 549 aa12.51□□□□□ -0.41
SSBP3-212ENST00000528930 SLC16A10Q8TF71 515 aa12.51□□□□□ -0.41
SSBP3-212ENST00000528930 CHRM1P11229 460 aaPredicted RBP12.5□□□□□ -0.41
SSBP3-212ENST00000528930 POLD1P28340 1107 aa12.5□□□□□ -0.41
SSBP3-212ENST00000528930 MMRN1Q13201 1228 aa12.5□□□□□ -0.41
SSBP3-212ENST00000528930 COL5A2P05997 1499 aaPredicted RBP12.49□□□□□ -0.41
SSBP3-212ENST00000528930 DPY19L2Q6NUT2 758 aa12.49□□□□□ -0.41
SSBP3-212ENST00000528930 L3MBTL3Q96JM7 780 aaPredicted RBP12.49□□□□□ -0.41
SSBP3-212ENST00000528930 ZNF827Q17R98 1081 aa12.48□□□□□ -0.41
SSBP3-212ENST00000528930 GPRASP1Q5JY77 1395 aa12.47□□□□□ -0.41
SSBP3-212ENST00000528930 RPGRIP1LQ68CZ1 1315 aa12.47□□□□□ -0.41
SSBP3-212ENST00000528930 ITSN1Q15811 1721 aa12.47□□□□□ -0.41
SSBP3-212ENST00000528930 PIK3C2AO00443 1686 aa12.47□□□□□ -0.41
SSBP3-212ENST00000528930 CRB1P82279 1406 aa12.46□□□□□ -0.41
SSBP3-212ENST00000528930 SPATA31E1Q6ZUB1 1445 aa12.46□□□□□ -0.41
SSBP3-212ENST00000528930 EVA1CP58658 441 aa12.46□□□□□ -0.41
SSBP3-212ENST00000528930 RBM46Q8TBY0 533 aaKnown RBP12.46□□□□□ -0.41
SSBP3-212ENST00000528930 PMFBP1Q8TBY8 1022 aa12.46□□□□□ -0.41
SSBP3-212ENST00000528930 TRPM1Q7Z4N2 1603 aa12.46□□□□□ -0.41
SSBP3-212ENST00000528930 CIZ1Q9ULV3 898 aaPredicted RBP12.45□□□□□ -0.42
SSBP3-212ENST00000528930 YTHDC2Q9H6S0 1430 aaKnown RBP12.45□□□□□ -0.42
SSBP3-212ENST00000528930 CPDO75976 1380 aa12.44□□□□□ -0.42
SSBP3-212ENST00000528930 EMP3P54852 163 aa12.44□□□□□ -0.42
SSBP3-212ENST00000528930 MARCH10Q8NA82 808 aaPredicted RBP12.44□□□□□ -0.42
SSBP3-212ENST00000528930 STK26Q9P289 416 aa12.44□□□□□ -0.42
SSBP3-212ENST00000528930 BRD4O60885 1362 aaPredicted RBP12.43□□□□□ -0.42
SSBP3-212ENST00000528930 POTEB3A0JP26 581 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 FSTL1Q12841 308 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 DDB1Q16531 1140 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 RGL3Q3MIN7 710 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 POTEBQ6S5H4 581 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 SIRT1Q96EB6 747 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 CABP2Q9NPB3 220 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 ANKRD30BQ9BXX2 1392 aa12.43□□□□□ -0.42
SSBP3-212ENST00000528930 PKD1L3Q7Z443 1732 aa12.42□□□□□ -0.42
SSBP3-212ENST00000528930 PNPLA7Q6ZV29 1317 aa12.42□□□□□ -0.42
SSBP3-212ENST00000528930 TNRC6CQ9HCJ0 1690 aaKnown RBP12.42□□□□□ -0.42
SSBP3-212ENST00000528930 ZC3H6P61129 1189 aaKnown RBP12.42□□□□□ -0.42
SSBP3-212ENST00000528930 PDAP1Q13442 181 aaKnown RBP12.42□□□□□ -0.42
SSBP3-212ENST00000528930 IFNLR1Q8IU57 520 aaPredicted RBP12.42□□□□□ -0.42
SSBP3-212ENST00000528930 FAM205CA6NFA0 338 aa12.41□□□□□ -0.42
SSBP3-212ENST00000528930 QRICH2Q9H0J4 1663 aa12.41□□□□□ -0.42
SSBP3-212ENST00000528930 COL18A1P39060 1754 aa12.41□□□□□ -0.42
SSBP3-212ENST00000528930 PDE4DIPQ5VU43 2346 aa12.4□□□□□ -0.42
SSBP3-212ENST00000528930 ADGRF5Q8IZF2 1346 aa12.4□□□□□ -0.42
SSBP3-212ENST00000528930 LY75O60449 1722 aa12.4□□□□□ -0.42
SSBP3-212ENST00000528930 C10orf71Q711Q0 1435 aa12.4□□□□□ -0.42
SSBP3-212ENST00000528930 NMRK2Q9NPI5 230 aa12.39□□□□□ -0.43
SSBP3-212ENST00000528930 KAT6BQ8WYB5 2073 aa12.38□□□□□ -0.43
SSBP3-212ENST00000528930 SPOCK2Q92563 424 aa12.38□□□□□ -0.43
SSBP3-212ENST00000528930 HS3ST6Q96QI5 342 aa12.38□□□□□ -0.43
SSBP3-212ENST00000528930 LRRC4BQ9NT99 713 aa12.38□□□□□ -0.43
SSBP3-212ENST00000528930 CD2APQ9Y5K6 639 aa12.38□□□□□ -0.43
SSBP3-212ENST00000528930 PIK3C2GO75747 1445 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 RGS19P49795 217 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 MLLT1Q03111 559 aaPredicted RBP12.37□□□□□ -0.43
SSBP3-212ENST00000528930 RGPD5Q99666 1765 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 KIAA1551Q9HCM1 1747 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 ABCC6O95255 1503 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 USP19O94966 1318 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 PRR36Q9H6K5 1346 aa12.37□□□□□ -0.43
SSBP3-212ENST00000528930 PRDM10Q9NQV6 1147 aa12.36□□□□□ -0.43
SSBP3-212ENST00000528930 PXDNLA1KZ92 1463 aa12.35□□□□□ -0.43
SSBP3-212ENST00000528930 TMEM132EQ6IEE7 984 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms