RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 POTEBQ6S5H4 581 aa10.21□□□□□ -0.77
CD44-228ENST00000528455 BCL2L12Q9HB09 334 aa10.21□□□□□ -0.77
CD44-228ENST00000528455 CDHR5Q9HBB8 845 aa10.21□□□□□ -0.77
CD44-228ENST00000528455 KIF7Q2M1P5 1343 aa10.21□□□□□ -0.78
CD44-228ENST00000528455 JCADQ9P266 1359 aa10.21□□□□□ -0.78
CD44-228ENST00000528455 PLEKHH1Q9ULM0 1364 aa10.21□□□□□ -0.78
CD44-228ENST00000528455 ADGRL3Q9HAR2 1447 aa10.21□□□□□ -0.78
CD44-228ENST00000528455 QRICH2Q9H0J4 1663 aa10.21□□□□□ -0.78
CD44-228ENST00000528455 NPDC1Q9NQX5 325 aaPredicted RBP10.2□□□□□ -0.78
CD44-228ENST00000528455 MST1RQ04912 1400 aa10.19□□□□□ -0.78
CD44-228ENST00000528455 SRPK2P78362 688 aaKnown RBP10.19□□□□□ -0.78
CD44-228ENST00000528455 DDX10Q13206 875 aaKnown RBP10.19□□□□□ -0.78
CD44-228ENST00000528455 PTGDRQ13258 359 aa10.18□□□□□ -0.78
CD44-228ENST00000528455 NUDT16Q96DE0 195 aaKnown RBP10.18□□□□□ -0.78
CD44-228ENST00000528455 HS3ST6Q96QI5 342 aa10.18□□□□□ -0.78
CD44-228ENST00000528455 COL16A1Q07092 1604 aaPredicted RBP10.18□□□□□ -0.78
CD44-228ENST00000528455 AHDC1Q5TGY3 1603 aaPredicted RBP10.18□□□□□ -0.78
CD44-228ENST00000528455 SPATA31A6Q5VVP1 1343 aa10.17□□□□□ -0.78
CD44-228ENST00000528455 ZMYND10O75800 440 aa10.17□□□□□ -0.78
CD44-228ENST00000528455 FCHSD2O94868 740 aa10.17□□□□□ -0.78
CD44-228ENST00000528455 LRRC59Q96AG4 307 aaKnown RBP10.17□□□□□ -0.78
CD44-228ENST00000528455 RGS17Q9UGC6 210 aaPredicted RBP10.17□□□□□ -0.78
CD44-228ENST00000528455 NALCNQ8IZF0 1738 aa10.16□□□□□ -0.78
CD44-228ENST00000528455 ATAD2Q6PL18 1390 aa10.16□□□□□ -0.78
CD44-228ENST00000528455 POTEEQ6S8J3 1075 aa10.16□□□□□ -0.78
CD44-228ENST00000528455 POLR3GLQ9BT43 218 aa10.16□□□□□ -0.78
CD44-228ENST00000528455 SLC12A5Q9H2X9 1139 aa10.16□□□□□ -0.78
CD44-228ENST00000528455 C1orf167Q5SNV9 1468 aa10.16□□□□□ -0.78
CD44-228ENST00000528455 NINLQ9Y2I6 1382 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 ADGRB2O60241 1585 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 PLEKHG3A1L390 1219 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 PER1O15534 1290 aaPredicted RBP10.15□□□□□ -0.78
CD44-228ENST00000528455 PTPREP23469 700 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 MEX3CQ5U5Q3 659 aaKnown RBP10.15□□□□□ -0.78
CD44-228ENST00000528455 BARGINQ6ZT62 677 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 ZNF687Q8N1G0 1237 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 CABP1Q9NZU7 370 aa10.15□□□□□ -0.78
CD44-228ENST00000528455 TULP4Q9NRJ4 1543 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 COL9A1P20849 921 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 HIC1Q14526 733 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 DIEXFQ68CQ4 756 aaKnown RBP10.14□□□□□ -0.79
CD44-228ENST00000528455 TMC1Q8TDI8 760 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 ORAI2Q96SN7 254 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 PANK3Q9H999 370 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 TERF2IPQ9NYB0 399 aa10.14□□□□□ -0.79
CD44-228ENST00000528455 GNPATO15228 680 aa10.13□□□□□ -0.79
CD44-228ENST00000528455 ESCO1Q5FWF5 840 aa10.13□□□□□ -0.79
CD44-228ENST00000528455 DDX17Q92841 729 aaKnown RBP10.13□□□□□ -0.79
CD44-228ENST00000528455 SHPRHQ149N8 1683 aa10.12□□□□□ -0.79
CD44-228ENST00000528455 NHSL1Q5SYE7 1610 aa10.12□□□□□ -0.79
CD44-228ENST00000528455 NUTM2BA6NNL0 878 aaPredicted RBP10.12□□□□□ -0.79
CD44-228ENST00000528455 NUTM2EB1AL46 878 aaPredicted RBP10.12□□□□□ -0.79
CD44-228ENST00000528455 POTEAQ6S8J7 498 aa10.12□□□□□ -0.79
CD44-228ENST00000528455 NUTM2AQ8IVF1 878 aaPredicted RBP10.12□□□□□ -0.79
CD44-228ENST00000528455 KCNK17Q96T54 332 aa10.12□□□□□ -0.79
CD44-228ENST00000528455 ANKARQ7Z5J8 1434 aa10.12□□□□□ -0.79
CD44-228ENST00000528455 PRR36Q9H6K5 1346 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 CDC42BPGQ6DT37 1551 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 PPP1R3GB7ZBB8 358 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 FECHP22830 423 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 PSEN2P49810 448 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 ZNF772Q68DY9 489 aaPredicted RBP10.11□□□□□ -0.79
CD44-228ENST00000528455 HDGFL2Q7Z4V5 671 aaPredicted RBP10.11□□□□□ -0.79
CD44-228ENST00000528455 AXIN2Q9Y2T1 843 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 KNSTRNQ9Y448 316 aa10.11□□□□□ -0.79
CD44-228ENST00000528455 RGPD8O14715 1765 aaPredicted RBP10.11□□□□□ -0.79
CD44-228ENST00000528455 SOS2Q07890 1332 aaPredicted RBP10.1□□□□□ -0.79
CD44-228ENST00000528455 NPHP3Q7Z494 1330 aa10.1□□□□□ -0.79
CD44-228ENST00000528455 ARHGAP33O14559 1287 aa10.1□□□□□ -0.79
CD44-228ENST00000528455 CARD14Q9BXL6 1004 aa10.1□□□□□ -0.79
CD44-228ENST00000528455 FMN2Q9NZ56 1722 aa10.1□□□□□ -0.79
CD44-228ENST00000528455 CPSF1Q10570 1443 aaKnown RBP10.09□□□□□ -0.79
CD44-228ENST00000528455 PPIP5K1Q6PFW1 1433 aa10.09□□□□□ -0.79
CD44-228ENST00000528455 LRP6O75581 1613 aa10.09□□□□□ -0.79
CD44-228ENST00000528455 FOXO3O43524 673 aa10.09□□□□□ -0.79
CD44-228ENST00000528455 PBX2P40425 430 aa10.09□□□□□ -0.79
CD44-228ENST00000528455 BRD4O60885 1362 aaPredicted RBP10.09□□□□□ -0.79
CD44-228ENST00000528455 PNPLA6Q8IY17 1366 aa10.09□□□□□ -0.79
CD44-228ENST00000528455 ANKRD36BQ8N2N9 1353 aa10.09□□□□□ -0.79
CD44-228ENST00000528455 ACEP12821 1306 aa10.08□□□□□ -0.8
CD44-228ENST00000528455 PRSS12P56730 875 aa10.08□□□□□ -0.8
CD44-228ENST00000528455 NGDNQ8NEJ9 315 aaKnown RBP10.08□□□□□ -0.8
CD44-228ENST00000528455 ATP7BP35670 1465 aa10.08□□□□□ -0.8
CD44-228ENST00000528455 ITSN1Q15811 1721 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 MYOM1P52179 1685 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 POLR3AO14802 1390 aaPredicted RBP10.07□□□□□ -0.8
CD44-228ENST00000528455 NPC1L1Q9UHC9 1359 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 PSME1Q06323 249 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 DMRTA1Q5VZB9 504 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 TTC13Q8NBP0 860 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 PMFBP1Q8TBY8 1022 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 CDCA7LQ96GN5 454 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 C8orf37Q96NL8 207 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 RBM27Q9P2N5 1060 aaKnown RBP10.07□□□□□ -0.8
CD44-228ENST00000528455 USP32Q8NFA0 1604 aa10.07□□□□□ -0.8
CD44-228ENST00000528455 KTN1Q86UP2 1357 aaKnown RBP10.06□□□□□ -0.8
CD44-228ENST00000528455 ANP32CO43423 234 aa10.06□□□□□ -0.8
CD44-228ENST00000528455 MAP2K5Q13163 448 aa10.06□□□□□ -0.8
CD44-228ENST00000528455 PADI6Q6TGC4 694 aa10.06□□□□□ -0.8
CD44-228ENST00000528455 KRI1Q8N9T8 703 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms