RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 ST8SIA5O15466 376 aa11.33□□□□□ -0.6
PCF11-202ENST00000528336 CDCA8Q53HL2 280 aa11.33□□□□□ -0.6
PCF11-202ENST00000528336 PLEKHM2Q8IWE5 1019 aa11.33□□□□□ -0.6
PCF11-202ENST00000528336 LZTS3O60299 673 aaPredicted RBP11.32□□□□□ -0.6
PCF11-202ENST00000528336 CTC1Q2NKJ3 1217 aa11.32□□□□□ -0.6
PCF11-202ENST00000528336 SIRT1Q96EB6 747 aa11.32□□□□□ -0.6
PCF11-202ENST00000528336 AGBL1Q96MI9 1066 aa11.32□□□□□ -0.6
PCF11-202ENST00000528336 NOD1Q9Y239 953 aa11.32□□□□□ -0.6
PCF11-202ENST00000528336 OSBPL3Q9H4L5 887 aa11.31□□□□□ -0.6
PCF11-202ENST00000528336 MKRN1Q9UHC7 482 aaKnown RBP11.31□□□□□ -0.6
PCF11-202ENST00000528336 Q6ZVU0 165 aa11.3□□□□□ -0.6
PCF11-202ENST00000528336 AAASQ9NRG9 546 aa11.3□□□□□ -0.6
PCF11-202ENST00000528336 BMP1P13497 986 aa11.29□□□□□ -0.6
PCF11-202ENST00000528336 SMCPP49901 116 aaPredicted RBP11.29□□□□□ -0.6
PCF11-202ENST00000528336 RELBQ01201 579 aa11.29□□□□□ -0.6
PCF11-202ENST00000528336 ADH1AP07327 375 aa11.28□□□□□ -0.6
PCF11-202ENST00000528336 MEIOBQ8N635 442 aa11.28□□□□□ -0.6
PCF11-202ENST00000528336 ZNF395Q9H8N7 513 aaPredicted RBP11.28□□□□□ -0.6
PCF11-202ENST00000528336 VRTNQ9H8Y1 702 aa11.28□□□□□ -0.6
PCF11-202ENST00000528336 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.27□□□□□ -0.61
PCF11-202ENST00000528336 ATP5J2-PTCD1G3V325 749 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 GTF2IP78347 998 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 PSME1Q06323 249 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 C6orf118Q5T5N4 469 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 CYP2U1Q7Z449 544 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 CRIPAKQ8N1N5 446 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 DACH1Q9UI36 760 aa11.27□□□□□ -0.61
PCF11-202ENST00000528336 UPP2O95045 317 aa11.26□□□□□ -0.61
PCF11-202ENST00000528336 KANK4Q5T7N3 995 aaPredicted RBP11.26□□□□□ -0.61
PCF11-202ENST00000528336 TRIM50Q86XT4 487 aa11.26□□□□□ -0.61
PCF11-202ENST00000528336 PCDHGA11Q9Y5H2 935 aa11.26□□□□□ -0.61
PCF11-202ENST00000528336 STAU1O95793 577 aaKnown RBP11.25□□□□□ -0.61
PCF11-202ENST00000528336 RASA1P20936 1047 aa11.25□□□□□ -0.61
PCF11-202ENST00000528336 PTGIRP43119 386 aa11.25□□□□□ -0.61
PCF11-202ENST00000528336 MRPL14Q6P1L8 145 aaKnown RBP11.25□□□□□ -0.61
PCF11-202ENST00000528336 OGFOD1Q8N543 542 aa11.25□□□□□ -0.61
PCF11-202ENST00000528336 KDF1Q8NAX2 398 aaPredicted RBP11.25□□□□□ -0.61
PCF11-202ENST00000528336 TSEN34Q9BSV6 310 aaKnown RBP11.25□□□□□ -0.61
PCF11-202ENST00000528336 BMP2P12643 396 aa11.24□□□□□ -0.61
PCF11-202ENST00000528336 CLDN10P78369 228 aa11.24□□□□□ -0.61
PCF11-202ENST00000528336 TRIM46Q7Z4K8 759 aa11.24□□□□□ -0.61
PCF11-202ENST00000528336 LINC00528Q8N1L1 170 aa11.24□□□□□ -0.61
PCF11-202ENST00000528336 PURBQ96QR8 312 aaKnown RBP11.24□□□□□ -0.61
PCF11-202ENST00000528336 ARHGEF10LQ9HCE6 1279 aa11.24□□□□□ -0.61
PCF11-202ENST00000528336 RAB6BQ9NRW1 208 aa11.24□□□□□ -0.61
PCF11-202ENST00000528336 DNAAF2Q9NVR5 837 aaKnown RBP11.24□□□□□ -0.61
PCF11-202ENST00000528336 ATP1A2P50993 1020 aa11.23□□□□□ -0.61
PCF11-202ENST00000528336 SCARF1Q14162 830 aa11.23□□□□□ -0.61
PCF11-202ENST00000528336 LARP1Q6PKG0 1096 aaKnown RBP11.23□□□□□ -0.61
PCF11-202ENST00000528336 ZNF594Q96JF6 807 aaPredicted RBP11.23□□□□□ -0.61
PCF11-202ENST00000528336 A0A1W2PRU2 124 aa11.22□□□□□ -0.61
PCF11-202ENST00000528336 MEN1O00255 615 aa11.22□□□□□ -0.61
PCF11-202ENST00000528336 LCE2BO14633 110 aa11.22□□□□□ -0.61
PCF11-202ENST00000528336 ZBTB7BO15156 539 aaPredicted RBP11.22□□□□□ -0.61
PCF11-202ENST00000528336 ATP13A2Q9NQ11 1180 aa11.22□□□□□ -0.61
PCF11-202ENST00000528336 GNRH1P01148 92 aa11.21□□□□□ -0.61
PCF11-202ENST00000528336 SRPK2P78362 688 aaKnown RBP11.21□□□□□ -0.61
PCF11-202ENST00000528336 PBXIP1Q96AQ6 731 aa11.21□□□□□ -0.61
PCF11-202ENST00000528336 KIAA1024Q9UPX6 916 aa11.21□□□□□ -0.61
PCF11-202ENST00000528336 CRTC2Q53ET0 693 aaPredicted RBP11.2□□□□□ -0.62
PCF11-202ENST00000528336 INSM2Q96T92 566 aaPredicted RBP11.2□□□□□ -0.62
PCF11-202ENST00000528336 CCDC102BQ68D86 513 aa11.19□□□□□ -0.62
PCF11-202ENST00000528336 LARGE2Q8N3Y3 721 aa11.19□□□□□ -0.62
PCF11-202ENST00000528336 TPCN2Q8NHX9 752 aa11.19□□□□□ -0.62
PCF11-202ENST00000528336 ZFP42Q96MM3 310 aa11.19□□□□□ -0.62
PCF11-202ENST00000528336 ETNK1Q9HBU6 452 aa11.19□□□□□ -0.62
PCF11-202ENST00000528336 SPINT1O43278 529 aa11.18□□□□□ -0.62
PCF11-202ENST00000528336 SCNN1DP51172 638 aa11.18□□□□□ -0.62
PCF11-202ENST00000528336 GDF10P55107 478 aa11.18□□□□□ -0.62
PCF11-202ENST00000528336 ESCO1Q5FWF5 840 aa11.18□□□□□ -0.62
PCF11-202ENST00000528336 NLRP3Q96P20 1036 aa11.18□□□□□ -0.62
PCF11-202ENST00000528336 POLMQ9NP87 494 aaPredicted RBP11.18□□□□□ -0.62
PCF11-202ENST00000528336 SERTAD1Q9UHV2 236 aa11.18□□□□□ -0.62
PCF11-202ENST00000528336 USP17L15C9J2P7 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L10C9JJH3 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L13C9JLJ4 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L12C9JPN9 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L11C9JVI0 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L21D6R901 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L18D6R9N7 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L22D6RA61 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L17D6RBQ6 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L19D6RCP7 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L20D6RJB6 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 IL2RAP01589 272 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 CTSOP43234 321 aaPredicted RBP11.17□□□□□ -0.62
PCF11-202ENST00000528336 USP17L24Q0WX57 530 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 PTK7Q13308 1070 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.17□□□□□ -0.62
PCF11-202ENST00000528336 CNKSR1Q969H4 720 aa11.17□□□□□ -0.62
PCF11-202ENST00000528336 RBM19Q9Y4C8 960 aaKnown RBP11.17□□□□□ -0.62
PCF11-202ENST00000528336 FAM196BA6NMK8 535 aa11.16□□□□□ -0.62
PCF11-202ENST00000528336 TMEM229AB2RXF0 380 aa11.16□□□□□ -0.62
PCF11-202ENST00000528336 CLN3Q13286 438 aa11.16□□□□□ -0.62
PCF11-202ENST00000528336 ACIN1Q9UKV3 1341 aaKnown RBP11.15□□□□□ -0.62
PCF11-202ENST00000528336 SFI1A8K8P3 1242 aa11.15□□□□□ -0.62
PCF11-202ENST00000528336 PPP1R15AO75807 674 aaPredicted RBP11.15□□□□□ -0.62
PCF11-202ENST00000528336 INHAP05111 366 aa11.15□□□□□ -0.62
PCF11-202ENST00000528336 DPYDQ12882 1025 aa11.15□□□□□ -0.62
PCF11-202ENST00000528336 ANKMY2Q8IV38 441 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms