RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 CD2APQ9Y5K6 639 aa23.35■■□□□ 1.33
CHMP4A-203ENST00000527154 DOT1LQ8TEK3 1739 aa23.35■■□□□ 1.33
CHMP4A-203ENST00000527154 EDC4Q6P2E9 1401 aaKnown RBP23.34■■□□□ 1.33
CHMP4A-203ENST00000527154 DDX54Q8TDD1 881 aaKnown RBP23.33■■□□□ 1.33
CHMP4A-203ENST00000527154 ROCK2O75116 1388 aaKnown RBP23.31■■□□□ 1.32
CHMP4A-203ENST00000527154 GPBP1L1Q9HC44 474 aaPredicted RBP23.31■■□□□ 1.32
CHMP4A-203ENST00000527154 CCNL1Q9UK58 526 aaPredicted RBP23.31■■□□□ 1.32
CHMP4A-203ENST00000527154 MEGF6O75095 1541 aa23.28■■□□□ 1.32
CHMP4A-203ENST00000527154 SYTL4Q96C24 671 aaPredicted RBP23.27■■□□□ 1.32
CHMP4A-203ENST00000527154 A0A1W2PP64 1363 aa23.26■■□□□ 1.31
CHMP4A-203ENST00000527154 ZCRB1Q8TBF4 217 aaKnown RBP23.25■■□□□ 1.31
CHMP4A-203ENST00000527154 PUS7Q96PZ0 661 aaKnown RBP23.25■■□□□ 1.31
CHMP4A-203ENST00000527154 SLC12A5Q9H2X9 1139 aa23.25■■□□□ 1.31
CHMP4A-203ENST00000527154 USP47Q96K76 1375 aa23.25■■□□□ 1.31
CHMP4A-203ENST00000527154 KIF3CO14782 793 aa23.24■■□□□ 1.31
CHMP4A-203ENST00000527154 C5P01031 1676 aa23.23■■□□□ 1.31
CHMP4A-203ENST00000527154 MSL1Q68DK7 614 aa23.23■■□□□ 1.31
CHMP4A-203ENST00000527154 HDGFL2Q7Z4V5 671 aaPredicted RBP23.23■■□□□ 1.31
CHMP4A-203ENST00000527154 FLAD1Q8NFF5 587 aa23.23■■□□□ 1.31
CHMP4A-203ENST00000527154 CICQ96RK0 1608 aaPredicted RBP23.22■■□□□ 1.31
CHMP4A-203ENST00000527154 HOXC9P31274 260 aa23.22■■□□□ 1.31
CHMP4A-203ENST00000527154 MAP3K19Q56UN5 1328 aa23.22■■□□□ 1.31
CHMP4A-203ENST00000527154 HMGB2P26583 209 aaKnown RBP23.21■■□□□ 1.31
CHMP4A-203ENST00000527154 CGNL1Q0VF96 1302 aa23.21■■□□□ 1.31
CHMP4A-203ENST00000527154 TAF1LQ8IZX4 1826 aa23.2■■□□□ 1.3
CHMP4A-203ENST00000527154 TOGARAM1Q9Y4F4 1720 aa23.19■■□□□ 1.3
CHMP4A-203ENST00000527154 TERF2IPQ9NYB0 399 aa23.19■■□□□ 1.3
CHMP4A-203ENST00000527154 MSH5O43196 834 aa23.18■■□□□ 1.3
CHMP4A-203ENST00000527154 LTV1Q96GA3 475 aaPredicted RBP23.18■■□□□ 1.3
CHMP4A-203ENST00000527154 RGPD2P0DJD1 1756 aa23.17■■□□□ 1.3
CHMP4A-203ENST00000527154 RTL1A6NKG5 1358 aa23.17■■□□□ 1.3
CHMP4A-203ENST00000527154 DNAJC5GQ8N7S2 189 aa23.17■■□□□ 1.3
CHMP4A-203ENST00000527154 IGSF1Q8N6C5 1336 aa23.16■■□□□ 1.3
CHMP4A-203ENST00000527154 AMIGO3Q86WK7 504 aa23.16■■□□□ 1.3
CHMP4A-203ENST00000527154 TMC1Q8TDI8 760 aa23.16■■□□□ 1.3
CHMP4A-203ENST00000527154 PALLDQ8WX93 1383 aa23.15■■□□□ 1.3
CHMP4A-203ENST00000527154 C4BP0C0L5 1744 aa23.15■■□□□ 1.3
CHMP4A-203ENST00000527154 NBPF6Q5VWK0 638 aa23.14■■□□□ 1.29
CHMP4A-203ENST00000527154 ZNF526Q8TF50 670 aaPredicted RBP23.14■■□□□ 1.29
CHMP4A-203ENST00000527154 NBPF4Q96M43 638 aa23.14■■□□□ 1.29
CHMP4A-203ENST00000527154 APLP1P51693 650 aa23.13■■□□□ 1.29
CHMP4A-203ENST00000527154 UBR3Q6ZT12 1888 aa23.13■■□□□ 1.29
CHMP4A-203ENST00000527154 SIN3AQ96ST3 1273 aa23.12■■□□□ 1.29
CHMP4A-203ENST00000527154 FBLN1P23142 703 aa23.11■■□□□ 1.29
CHMP4A-203ENST00000527154 NSD3Q9BZ95 1437 aa23.1■■□□□ 1.29
CHMP4A-203ENST00000527154 AMPHP49418 695 aa23.1■■□□□ 1.29
CHMP4A-203ENST00000527154 COG3Q96JB2 828 aa23.1■■□□□ 1.29
CHMP4A-203ENST00000527154 PCDH11XQ9BZA7 1347 aa23.08■■□□□ 1.29
CHMP4A-203ENST00000527154 PCDH11YQ9BZA8 1340 aa23.08■■□□□ 1.29
CHMP4A-203ENST00000527154 MAP2P11137 1827 aaKnown RBP23.08■■□□□ 1.29
CHMP4A-203ENST00000527154 SSFA2P28290 1259 aa23.08■■□□□ 1.29
CHMP4A-203ENST00000527154 CYP27B1O15528 508 aa23.07■■□□□ 1.28
CHMP4A-203ENST00000527154 TOMM70O94826 608 aa23.07■■□□□ 1.28
CHMP4A-203ENST00000527154 KIAA1551Q9HCM1 1747 aa23.06■■□□□ 1.28
CHMP4A-203ENST00000527154 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.06■■□□□ 1.28
CHMP4A-203ENST00000527154 RAPGEF4Q8WZA2 1011 aa23.06■■□□□ 1.28
CHMP4A-203ENST00000527154 SMARCC1Q92922 1105 aaPredicted RBP23.06■■□□□ 1.28
CHMP4A-203ENST00000527154 CARD11Q9BXL7 1154 aa23.06■■□□□ 1.28
CHMP4A-203ENST00000527154 KIF13BQ9NQT8 1826 aa23.05■■□□□ 1.28
CHMP4A-203ENST00000527154 AK7Q96M32 723 aa23.05■■□□□ 1.28
CHMP4A-203ENST00000527154 NCAPD2Q15021 1401 aa23.05■■□□□ 1.28
CHMP4A-203ENST00000527154 PXDNLA1KZ92 1463 aa23.05■■□□□ 1.28
CHMP4A-203ENST00000527154 TESK2Q96S53 571 aa23.04■■□□□ 1.28
CHMP4A-203ENST00000527154 INSRP06213 1382 aa23.03■■□□□ 1.28
CHMP4A-203ENST00000527154 KIF24Q5T7B8 1368 aa23.03■■□□□ 1.28
CHMP4A-203ENST00000527154 TATP17735 454 aaPredicted RBP23.03■■□□□ 1.28
CHMP4A-203ENST00000527154 NKX1-1Q15270 411 aaPredicted RBP23.03■■□□□ 1.28
CHMP4A-203ENST00000527154 USHBP1Q8N6Y0 703 aa23.03■■□□□ 1.28
CHMP4A-203ENST00000527154 ITGB4P16144 1822 aa23.03■■□□□ 1.28
CHMP4A-203ENST00000527154 PKD1L3Q7Z443 1732 aa23.02■■□□□ 1.28
CHMP4A-203ENST00000527154 MPRIPQ6WCQ1 1025 aa23.02■■□□□ 1.28
CHMP4A-203ENST00000527154 SMG6Q86US8 1419 aaKnown RBP23.01■■□□□ 1.27
CHMP4A-203ENST00000527154 RRS1Q15050 365 aaKnown RBP23.01■■□□□ 1.27
CHMP4A-203ENST00000527154 SMIM5Q71RC9 77 aa23.01■■□□□ 1.27
CHMP4A-203ENST00000527154 JMYQ8N9B5 988 aa23.01■■□□□ 1.27
CHMP4A-203ENST00000527154 PIGBQ92521 554 aa23.01■■□□□ 1.27
CHMP4A-203ENST00000527154 LINC00116Q8NCU8 138 aa23■■□□□ 1.27
CHMP4A-203ENST00000527154 FYB1O15117 783 aa22.99■■□□□ 1.27
CHMP4A-203ENST00000527154 TGFB2P61812 414 aa22.99■■□□□ 1.27
CHMP4A-203ENST00000527154 WWC3Q9ULE0 1092 aa22.99■■□□□ 1.27
CHMP4A-203ENST00000527154 LOC102724428A0A0B4J2F2 783 aa22.98■■□□□ 1.27
CHMP4A-203ENST00000527154 SIK1P57059 783 aa22.98■■□□□ 1.27
CHMP4A-203ENST00000527154 C10orf71Q711Q0 1435 aa22.98■■□□□ 1.27
CHMP4A-203ENST00000527154 WDR90Q96KV7 1748 aa22.97■■□□□ 1.27
CHMP4A-203ENST00000527154 PHF14O94880 888 aa22.97■■□□□ 1.27
CHMP4A-203ENST00000527154 HSP90AB2PQ58FF8 381 aa22.97■■□□□ 1.27
CHMP4A-203ENST00000527154 FLT4P35916 1363 aa22.97■■□□□ 1.27
CHMP4A-203ENST00000527154 NEUROD1Q13562 356 aa22.96■■□□□ 1.27
CHMP4A-203ENST00000527154 RBM46Q8TBY0 533 aaKnown RBP22.96■■□□□ 1.27
CHMP4A-203ENST00000527154 ITPK1Q13572 414 aa22.95■■□□□ 1.26
CHMP4A-203ENST00000527154 NMRK2Q9NPI5 230 aa22.95■■□□□ 1.26
CHMP4A-203ENST00000527154 PCNTO95613 3336 aa22.94■■□□□ 1.26
CHMP4A-203ENST00000527154 MMP10P09238 476 aa22.94■■□□□ 1.26
CHMP4A-203ENST00000527154 KLRG1Q96E93 195 aa22.94■■□□□ 1.26
CHMP4A-203ENST00000527154 BRCA1P38398 1863 aaKnown RBP22.93■■□□□ 1.26
CHMP4A-203ENST00000527154 SLC24A1O60721 1099 aa22.92■■□□□ 1.26
CHMP4A-203ENST00000527154 COL13A1Q5TAT6 717 aaPredicted RBP22.92■■□□□ 1.26
CHMP4A-203ENST00000527154 GGNBP2Q9H3C7 697 aa22.91■■□□□ 1.26
CHMP4A-203ENST00000527154 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.91■■□□□ 1.264e-9■■■■■ 32
CHMP4A-203ENST00000527154 KDRP35968 1356 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms