RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 CCNL1Q9UK58 526 aaPredicted RBP16.63■□□□□ 0.25
SDCBP-211ENST00000523441 GRIN3BO60391 1043 aa16.62■□□□□ 0.25
SDCBP-211ENST00000523441 GPBP1L1Q9HC44 474 aaPredicted RBP16.62■□□□□ 0.25
SDCBP-211ENST00000523441 COL23A1Q86Y22 540 aaPredicted RBP16.61■□□□□ 0.25
SDCBP-211ENST00000523441 SIN3AQ96ST3 1273 aa16.61■□□□□ 0.25
SDCBP-211ENST00000523441 USP54Q70EL1 1684 aa16.6■□□□□ 0.25
SDCBP-211ENST00000523441 USP31Q70CQ4 1352 aa16.6■□□□□ 0.25
SDCBP-211ENST00000523441 HDGFL2Q7Z4V5 671 aaPredicted RBP16.59■□□□□ 0.25
SDCBP-211ENST00000523441 SLC12A5Q9H2X9 1139 aa16.59■□□□□ 0.25
SDCBP-211ENST00000523441 SBNO2Q9Y2G9 1366 aa16.59■□□□□ 0.25
SDCBP-211ENST00000523441 FBLN1P23142 703 aa16.58■□□□□ 0.24
SDCBP-211ENST00000523441 ANKRD36BQ8N2N9 1353 aa16.58■□□□□ 0.24
SDCBP-211ENST00000523441 FAM208AQ9UK61 1670 aaKnown RBP16.58■□□□□ 0.24
SDCBP-211ENST00000523441 C5P01031 1676 aa16.57■□□□□ 0.24
SDCBP-211ENST00000523441 CD163L1Q9NR16 1453 aa16.57■□□□□ 0.24
SDCBP-211ENST00000523441 USP47Q96K76 1375 aa16.56■□□□□ 0.24
SDCBP-211ENST00000523441 USHBP1Q8N6Y0 703 aa16.56■□□□□ 0.24
SDCBP-211ENST00000523441 IP6K1Q92551 441 aa16.56■□□□□ 0.24
SDCBP-211ENST00000523441 NSD2O96028 1365 aa16.55■□□□□ 0.24
SDCBP-211ENST00000523441 AMPHP49418 695 aa16.55■□□□□ 0.24
SDCBP-211ENST00000523441 ZCRB1Q8TBF4 217 aaKnown RBP16.55■□□□□ 0.24
SDCBP-211ENST00000523441 HSPA6P17066 643 aa16.54■□□□□ 0.24
SDCBP-211ENST00000523441 SMIM5Q71RC9 77 aa16.54■□□□□ 0.24
SDCBP-211ENST00000523441 MEGF6O75095 1541 aa16.54■□□□□ 0.24
SDCBP-211ENST00000523441 PHF14O94880 888 aa16.53■□□□□ 0.24
SDCBP-211ENST00000523441 EDC4Q6P2E9 1401 aaKnown RBP16.53■□□□□ 0.24
SDCBP-211ENST00000523441 A0A1W2PP64 1363 aa16.52■□□□□ 0.24
SDCBP-211ENST00000523441 TERF2IPQ9NYB0 399 aa16.52■□□□□ 0.24
SDCBP-211ENST00000523441 TAF1LQ8IZX4 1826 aa16.52■□□□□ 0.23
SDCBP-211ENST00000523441 HOXC9P31274 260 aa16.51■□□□□ 0.23
SDCBP-211ENST00000523441 MAP3K19Q56UN5 1328 aa16.5■□□□□ 0.23
SDCBP-211ENST00000523441 MPRIPQ6WCQ1 1025 aa16.5■□□□□ 0.23
SDCBP-211ENST00000523441 COG3Q96JB2 828 aa16.5■□□□□ 0.23
SDCBP-211ENST00000523441 CARD11Q9BXL7 1154 aa16.5■□□□□ 0.23
SDCBP-211ENST00000523441 IGSF1Q8N6C5 1336 aa16.49■□□□□ 0.23
SDCBP-211ENST00000523441 CD2APQ9Y5K6 639 aa16.49■□□□□ 0.23
SDCBP-211ENST00000523441 RRS1Q15050 365 aaKnown RBP16.48■□□□□ 0.23
SDCBP-211ENST00000523441 NBPF6Q5VWK0 638 aa16.47■□□□□ 0.23
SDCBP-211ENST00000523441 RAPGEF4Q8WZA2 1011 aa16.47■□□□□ 0.23
SDCBP-211ENST00000523441 AK7Q96M32 723 aa16.47■□□□□ 0.23
SDCBP-211ENST00000523441 NBPF4Q96M43 638 aa16.47■□□□□ 0.23
SDCBP-211ENST00000523441 C4BP0C0L5 1744 aa16.47■□□□□ 0.23
SDCBP-211ENST00000523441 ITGB4P16144 1822 aa16.46■□□□□ 0.23
SDCBP-211ENST00000523441 ADCY9O60503 1353 aa16.46■□□□□ 0.23
SDCBP-211ENST00000523441 PALLDQ8WX93 1383 aa16.46■□□□□ 0.23
SDCBP-211ENST00000523441 AMIGO3Q86WK7 504 aa16.45■□□□□ 0.22
SDCBP-211ENST00000523441 TOGARAM1Q9Y4F4 1720 aa16.45■□□□□ 0.22
SDCBP-211ENST00000523441 TATP17735 454 aaPredicted RBP16.44■□□□□ 0.22
SDCBP-211ENST00000523441 UBR3Q6ZT12 1888 aa16.44■□□□□ 0.22
SDCBP-211ENST00000523441 FLAD1Q8NFF5 587 aa16.43■□□□□ 0.22
SDCBP-211ENST00000523441 N4BP2Q86UW6 1770 aaPredicted RBP16.43■□□□□ 0.22
SDCBP-211ENST00000523441 KIF3CO14782 793 aa16.42■□□□□ 0.22
SDCBP-211ENST00000523441 CAPN15O75808 1086 aa16.42■□□□□ 0.22
SDCBP-211ENST00000523441 GGNBP2Q9H3C7 697 aa16.42■□□□□ 0.22
SDCBP-211ENST00000523441 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.41■□□□□ 0.22
SDCBP-211ENST00000523441 SMG6Q86US8 1419 aaKnown RBP16.41■□□□□ 0.22
SDCBP-211ENST00000523441 PCDH11XQ9BZA7 1347 aa16.4■□□□□ 0.22
SDCBP-211ENST00000523441 PCDH11YQ9BZA8 1340 aa16.4■□□□□ 0.22
SDCBP-211ENST00000523441 HSP90AB2PQ58FF8 381 aa16.38■□□□□ 0.21
SDCBP-211ENST00000523441 BCS1LQ9Y276 419 aa16.38■□□□□ 0.21
SDCBP-211ENST00000523441 GNPATO15228 680 aa16.37■□□□□ 0.21
SDCBP-211ENST00000523441 CYP27B1O15528 508 aa16.37■□□□□ 0.21
SDCBP-211ENST00000523441 APLP1P51693 650 aa16.37■□□□□ 0.21
SDCBP-211ENST00000523441 HTRA3P83110 453 aa16.37■□□□□ 0.21
SDCBP-211ENST00000523441 LINC00116Q8NCU8 138 aa16.37■□□□□ 0.21
SDCBP-211ENST00000523441 ARHGAP27Q6ZUM4 889 aa16.36■□□□□ 0.21
SDCBP-211ENST00000523441 SMARCC1Q92922 1105 aaPredicted RBP16.36■□□□□ 0.21
SDCBP-211ENST00000523441 NMRK2Q9NPI5 230 aa16.36■□□□□ 0.21
SDCBP-211ENST00000523441 CGNL1Q0VF96 1302 aa16.36■□□□□ 0.21
SDCBP-211ENST00000523441 RTL1A6NKG5 1358 aa16.36■□□□□ 0.21
SDCBP-211ENST00000523441 KIF20BQ96Q89 1820 aa16.35■□□□□ 0.21
SDCBP-211ENST00000523441 A0A0G2JLW4 131 aa16.35■□□□□ 0.21
SDCBP-211ENST00000523441 PPM1GO15355 546 aaPredicted RBP16.35■□□□□ 0.21
SDCBP-211ENST00000523441 MMP10P09238 476 aa16.35■□□□□ 0.21
SDCBP-211ENST00000523441 PIGBQ92521 554 aa16.35■□□□□ 0.21
SDCBP-211ENST00000523441 WDR90Q96KV7 1748 aa16.35■□□□□ 0.21
SDCBP-211ENST00000523441 CICQ96RK0 1608 aaPredicted RBP16.34■□□□□ 0.21
SDCBP-211ENST00000523441 ST20-MTHFSA0A0A6YYL1 179 aa16.33■□□□□ 0.2
SDCBP-211ENST00000523441 TOMM70O94826 608 aa16.33■□□□□ 0.2
SDCBP-211ENST00000523441 SSFA2P28290 1259 aa16.33■□□□□ 0.2
SDCBP-211ENST00000523441 ATP6V1AP38606 617 aa16.33■□□□□ 0.2
SDCBP-211ENST00000523441 MAP2P11137 1827 aaKnown RBP16.33■□□□□ 0.2
SDCBP-211ENST00000523441 LOC102724428A0A0B4J2F2 783 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 FYB1O15117 783 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 SIK1P57059 783 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 ITPK1Q13572 414 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 PKD1L3Q7Z443 1732 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 C16orf71Q8IYS4 520 aaPredicted RBP16.32■□□□□ 0.2
SDCBP-211ENST00000523441 NSD3Q9BZ95 1437 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 KIAA1551Q9HCM1 1747 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 ASAP1Q9ULH1 1129 aa16.32■□□□□ 0.2
SDCBP-211ENST00000523441 PXDNLA1KZ92 1463 aa16.31■□□□□ 0.2
SDCBP-211ENST00000523441 FCHSD2O94868 740 aa16.31■□□□□ 0.2
SDCBP-211ENST00000523441 HMGB2P26583 209 aaKnown RBP16.31■□□□□ 0.2
SDCBP-211ENST00000523441 DNAJC5GQ8N7S2 189 aa16.31■□□□□ 0.2
SDCBP-211ENST00000523441 TMOD3Q9NYL9 352 aa16.31■□□□□ 0.2
SDCBP-211ENST00000523441 TONSLQ96HA7 1378 aa16.3■□□□□ 0.2
SDCBP-211ENST00000523441 EMILIN1Q9Y6C2 1016 aa16.3■□□□□ 0.2
SDCBP-211ENST00000523441 INSRP06213 1382 aa16.29■□□□□ 0.2
SDCBP-211ENST00000523441 FLT4P35916 1363 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms