RNA–Protein interactions for RNA: ENST00000522466.1

PDGFRB-210, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 296 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-210ENST00000522466 KTN1Q86UP2 1357 aaKnown RBP11.56□□□□□ -0.56
PDGFRB-210ENST00000522466 LTV1Q96GA3 475 aaPredicted RBP11.56□□□□□ -0.56
PDGFRB-210ENST00000522466 ZNF692Q9BU19 519 aaPredicted RBP11.56□□□□□ -0.56
PDGFRB-210ENST00000522466 TTC21AQ8NDW8 1320 aa11.56□□□□□ -0.56
PDGFRB-210ENST00000522466 DOT1LQ8TEK3 1739 aa11.55□□□□□ -0.56
PDGFRB-210ENST00000522466 PRIM1P49642 420 aaKnown RBP11.55□□□□□ -0.56
PDGFRB-210ENST00000522466 NME9Q86XW9 330 aa11.55□□□□□ -0.56
PDGFRB-210ENST00000522466 COL23A1Q86Y22 540 aaPredicted RBP11.55□□□□□ -0.56
PDGFRB-210ENST00000522466 CCNL1Q9UK58 526 aaPredicted RBP11.54□□□□□ -0.56
PDGFRB-210ENST00000522466 LY75O60449 1722 aa11.54□□□□□ -0.56
PDGFRB-210ENST00000522466 MON2Q7Z3U7 1717 aa11.52□□□□□ -0.56
PDGFRB-210ENST00000522466 RGPD2P0DJD1 1756 aa11.51□□□□□ -0.57
PDGFRB-210ENST00000522466 NSD2O96028 1365 aa11.51□□□□□ -0.57
PDGFRB-210ENST00000522466 CAPN15O75808 1086 aa11.5□□□□□ -0.57
PDGFRB-210ENST00000522466 SMIM5Q71RC9 77 aa11.5□□□□□ -0.57
PDGFRB-210ENST00000522466 TMC1Q8TDI8 760 aa11.5□□□□□ -0.57
PDGFRB-210ENST00000522466 ADCY9O60503 1353 aa11.5□□□□□ -0.57
PDGFRB-210ENST00000522466 ANKRD36BQ8N2N9 1353 aa11.5□□□□□ -0.57
PDGFRB-210ENST00000522466 KIF3CO14782 793 aa11.49□□□□□ -0.57
PDGFRB-210ENST00000522466 USP31Q70CQ4 1352 aa11.49□□□□□ -0.57
PDGFRB-210ENST00000522466 CD2APQ9Y5K6 639 aa11.48□□□□□ -0.57
PDGFRB-210ENST00000522466 IGSF1Q8N6C5 1336 aa11.48□□□□□ -0.57
PDGFRB-210ENST00000522466 C5P01031 1676 aa11.47□□□□□ -0.57
PDGFRB-210ENST00000522466 USP54Q70EL1 1684 aa11.47□□□□□ -0.57
PDGFRB-210ENST00000522466 USP47Q96K76 1375 aa11.47□□□□□ -0.57
PDGFRB-210ENST00000522466 FBLN1P23142 703 aa11.47□□□□□ -0.57
PDGFRB-210ENST00000522466 ZCRB1Q8TBF4 217 aaKnown RBP11.47□□□□□ -0.57
PDGFRB-210ENST00000522466 SBNO2Q9Y2G9 1366 aa11.46□□□□□ -0.57
PDGFRB-210ENST00000522466 PHF14O94880 888 aa11.46□□□□□ -0.57
PDGFRB-210ENST00000522466 IP6K1Q92551 441 aa11.46□□□□□ -0.57
PDGFRB-210ENST00000522466 L3MBTL2Q969R5 705 aa11.46□□□□□ -0.57
PDGFRB-210ENST00000522466 TAF1LQ8IZX4 1826 aa11.46□□□□□ -0.58
PDGFRB-210ENST00000522466 ROCK2O75116 1388 aaKnown RBP11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 APLP1P51693 650 aa11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 HTRA3P83110 453 aa11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 USHBP1Q8N6Y0 703 aa11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 SLC12A5Q9H2X9 1139 aa11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 FAM208AQ9UK61 1670 aaKnown RBP11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 MEGF6O75095 1541 aa11.45□□□□□ -0.58
PDGFRB-210ENST00000522466 CD163L1Q9NR16 1453 aa11.44□□□□□ -0.58
PDGFRB-210ENST00000522466 HDGFL2Q7Z4V5 671 aaPredicted RBP11.44□□□□□ -0.58
PDGFRB-210ENST00000522466 AMIGO3Q86WK7 504 aa11.44□□□□□ -0.58
PDGFRB-210ENST00000522466 AMPHP49418 695 aa11.43□□□□□ -0.58
PDGFRB-210ENST00000522466 COL13A1Q5TAT6 717 aaPredicted RBP11.43□□□□□ -0.58
PDGFRB-210ENST00000522466 DNAJC5GQ8N7S2 189 aa11.43□□□□□ -0.58
PDGFRB-210ENST00000522466 HOXC9P31274 260 aa11.42□□□□□ -0.58
PDGFRB-210ENST00000522466 MPRIPQ6WCQ1 1025 aa11.42□□□□□ -0.58
PDGFRB-210ENST00000522466 AK7Q96M32 723 aa11.42□□□□□ -0.58
PDGFRB-210ENST00000522466 SIN3AQ96ST3 1273 aa11.42□□□□□ -0.58
PDGFRB-210ENST00000522466 PALLDQ8WX93 1383 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 N4BP2Q86UW6 1770 aaPredicted RBP11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 MAP3K19Q56UN5 1328 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 C4BP0C0L5 1744 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 TOGARAM1Q9Y4F4 1720 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 UBR3Q6ZT12 1888 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 FLAD1Q8NFF5 587 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 NMRK2Q9NPI5 230 aa11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 EDC4Q6P2E9 1401 aaKnown RBP11.41□□□□□ -0.58
PDGFRB-210ENST00000522466 WDR90Q96KV7 1748 aa11.4□□□□□ -0.58
PDGFRB-210ENST00000522466 ITGB4P16144 1822 aa11.4□□□□□ -0.58
PDGFRB-210ENST00000522466 NEUROD1Q13562 356 aa11.4□□□□□ -0.58
PDGFRB-210ENST00000522466 NBPF6Q5VWK0 638 aa11.4□□□□□ -0.58
PDGFRB-210ENST00000522466 NBPF4Q96M43 638 aa11.4□□□□□ -0.58
PDGFRB-210ENST00000522466 A0A1W2PP64 1363 aa11.4□□□□□ -0.59
PDGFRB-210ENST00000522466 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.39□□□□□ -0.59
PDGFRB-210ENST00000522466 TOMM70O94826 608 aa11.39□□□□□ -0.59
PDGFRB-210ENST00000522466 RRS1Q15050 365 aaKnown RBP11.39□□□□□ -0.59
PDGFRB-210ENST00000522466 NCBP3Q53F19 620 aaKnown RBP11.39□□□□□ -0.59
PDGFRB-210ENST00000522466 BCS1LQ9Y276 419 aa11.39□□□□□ -0.59
PDGFRB-210ENST00000522466 ARHGAP27Q6ZUM4 889 aa11.38□□□□□ -0.59
PDGFRB-210ENST00000522466 RAPGEF4Q8WZA2 1011 aa11.38□□□□□ -0.59
PDGFRB-210ENST00000522466 COG3Q96JB2 828 aa11.38□□□□□ -0.59
PDGFRB-210ENST00000522466 TERF2IPQ9NYB0 399 aa11.38□□□□□ -0.59
PDGFRB-210ENST00000522466 A0A0G2JLW4 131 aa11.37□□□□□ -0.59
PDGFRB-210ENST00000522466 NPM3O75607 178 aaKnown RBP11.37□□□□□ -0.59
PDGFRB-210ENST00000522466 TATP17735 454 aaPredicted RBP11.37□□□□□ -0.59
PDGFRB-210ENST00000522466 TNS4Q8IZW8 715 aa11.37□□□□□ -0.59
PDGFRB-210ENST00000522466 C16orf71Q8IYS4 520 aaPredicted RBP11.36□□□□□ -0.59
PDGFRB-210ENST00000522466 LINC00116Q8NCU8 138 aa11.36□□□□□ -0.59
PDGFRB-210ENST00000522466 KLRG1Q96E93 195 aa11.36□□□□□ -0.59
PDGFRB-210ENST00000522466 CICQ96RK0 1608 aaPredicted RBP11.35□□□□□ -0.59
PDGFRB-210ENST00000522466 GNPATO15228 680 aa11.35□□□□□ -0.59
PDGFRB-210ENST00000522466 MMP10P09238 476 aa11.35□□□□□ -0.59
PDGFRB-210ENST00000522466 KIAA1551Q9HCM1 1747 aa11.35□□□□□ -0.59
PDGFRB-210ENST00000522466 PCDH11XQ9BZA7 1347 aa11.35□□□□□ -0.59
PDGFRB-210ENST00000522466 PCDH11YQ9BZA8 1340 aa11.35□□□□□ -0.59
PDGFRB-210ENST00000522466 PXDNLA1KZ92 1463 aa11.34□□□□□ -0.59
PDGFRB-210ENST00000522466 CYP27B1O15528 508 aa11.34□□□□□ -0.59
PDGFRB-210ENST00000522466 FCHSD2O94868 740 aa11.34□□□□□ -0.59
PDGFRB-210ENST00000522466 PIGBQ92521 554 aa11.34□□□□□ -0.59
PDGFRB-210ENST00000522466 SMARCC1Q92922 1105 aaPredicted RBP11.34□□□□□ -0.59
PDGFRB-210ENST00000522466 CARD11Q9BXL7 1154 aa11.34□□□□□ -0.59
PDGFRB-210ENST00000522466 MAP2P11137 1827 aaKnown RBP11.33□□□□□ -0.6
PDGFRB-210ENST00000522466 SSFA2P28290 1259 aa11.33□□□□□ -0.6
PDGFRB-210ENST00000522466 ITPK1Q13572 414 aa11.33□□□□□ -0.6
PDGFRB-210ENST00000522466 C9orf131Q5VYM1 1079 aa11.33□□□□□ -0.6
PDGFRB-210ENST00000522466 RBM46Q8TBY0 533 aaKnown RBP11.33□□□□□ -0.6
PDGFRB-210ENST00000522466 KIF13BQ9NQT8 1826 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 LOC102724428A0A0B4J2F2 783 aa11.32□□□□□ -0.6
PDGFRB-210ENST00000522466 DPEP1P16444 411 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms