RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 MBD3O95983 291 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 CPA1P15085 419 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 FOSBP53539 338 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 HS1BP3Q53T59 392 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 CYB5RLQ6IPT4 315 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 CKAP2LQ8IYA6 745 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 ST7Q9NRC1 585 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 ARHGEF12Q9NZN5 1544 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 ZBTB12Q9Y330 459 aaPredicted RBP12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 VGFO15240 615 aaPredicted RBP12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 PSEN1P49768 467 aa12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 PALD1Q9ULE6 856 aa12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 PLA2R1Q13018 1463 aa12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 PIBF1Q8WXW3 757 aa12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 IQGAP2Q13576 1575 aa12.13□□□□□ -0.47
PDGFRB-207ENST00000520579 TRMT1Q9NXH9 659 aaKnown RBP12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 ZBTB7BO15156 539 aaPredicted RBP12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 FAM173BQ6P4H8 233 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 GCC1Q96CN9 775 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 MINK1Q8N4C8 1332 aaPredicted RBP12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 GOLIM4O00461 696 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 KDM5DQ9BY66 1539 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 GORABQ5T7V8 394 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 TTC22Q5TAA0 569 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 MIS18AQ9NYP9 233 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 FBXO3Q9UK99 471 aa12.12□□□□□ -0.47
PDGFRB-207ENST00000520579 NCOA3Q9Y6Q9 1424 aa12.11□□□□□ -0.47
PDGFRB-207ENST00000520579 TPD52L1Q16890 204 aaPredicted RBP12.11□□□□□ -0.47
PDGFRB-207ENST00000520579 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.11□□□□□ -0.47
PDGFRB-207ENST00000520579 MCM5P33992 734 aa12.11□□□□□ -0.47
PDGFRB-207ENST00000520579 DIAPH3Q9NSV4 1193 aa12.11□□□□□ -0.47
PDGFRB-207ENST00000520579 PPIP5K1Q6PFW1 1433 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 NRBP1Q9UHY1 535 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 F6X3S4 739 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 REC8O95072 547 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 CCDC186Q7Z3E2 898 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 PRIMPOLQ96LW4 560 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 CWC22Q9HCG8 908 aaKnown RBP12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 E9PCH4 1651 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 PPFIA3O75145 1194 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 TWISTNBQ3B726 338 aaPredicted RBP12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 TRIM5Q9C035 493 aa12.1□□□□□ -0.47
PDGFRB-207ENST00000520579 SPAG9O60271 1321 aaKnown RBP12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 MAGI1Q96QZ7 1491 aaPredicted RBP12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 DIAPH1O60610 1272 aaKnown RBP12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 MMP14P50281 582 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 PHACTR3Q96KR7 559 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 IL1RAPL2Q9NP60 686 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 ERC2O15083 957 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 PHF14O94880 888 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 C8orf58Q8NAV2 365 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 A0A087WWV3 80 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 LUZP1Q86V48 1076 aa12.09□□□□□ -0.47
PDGFRB-207ENST00000520579 CEBPZQ03701 1054 aaKnown RBP12.08□□□□□ -0.48
PDGFRB-207ENST00000520579 GGT6Q6P531 493 aa12.08□□□□□ -0.48
PDGFRB-207ENST00000520579 POLR3GO15318 223 aaPredicted RBP12.08□□□□□ -0.48
PDGFRB-207ENST00000520579 MEIS3Q99687 375 aa12.08□□□□□ -0.48
PDGFRB-207ENST00000520579 GOLGA6L4A6NEF3 574 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 FILIP1Q7Z7B0 1213 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 GTF3C6Q969F1 213 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 AP5Z1O43299 807 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 POLR3AO14802 1390 aaPredicted RBP12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 MCCP23508 829 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 GTF2F1P35269 517 aaKnown RBP eCLIP12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 SKIDA1Q1XH10 827 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 CCDC112Q8NEF3 446 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 SRCIN1Q9C0H9 1055 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 TFIP11Q9UBB9 837 aaKnown RBP12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 RSPH14Q9UHP6 348 aa12.07□□□□□ -0.48
PDGFRB-207ENST00000520579 CYP2E1P05181 493 aaPredicted RBP12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 GRIPAP1Q4V328 841 aa12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 DNM1Q05193 864 aaKnown RBP12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 TCEANC2Q96MN5 208 aa12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 SCAF11Q99590 1463 aaKnown RBP12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 KCNF1Q9H3M0 494 aa12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 GEMIN8Q9NWZ8 242 aaKnown RBP12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 CALCOCO1Q9P1Z2 691 aa12.06□□□□□ -0.48
PDGFRB-207ENST00000520579 TRPM1Q7Z4N2 1603 aa12.05□□□□□ -0.48
PDGFRB-207ENST00000520579 SYNMO15061 1565 aa12.05□□□□□ -0.48
PDGFRB-207ENST00000520579 KDM4AO75164 1064 aa12.05□□□□□ -0.48
PDGFRB-207ENST00000520579 CCDC83Q8IWF9 413 aa12.05□□□□□ -0.48
PDGFRB-207ENST00000520579 CCDC183Q5T5S1 534 aa12.05□□□□□ -0.48
PDGFRB-207ENST00000520579 MRPL50Q8N5N7 158 aaKnown RBP12.05□□□□□ -0.48
PDGFRB-207ENST00000520579 NUTM2FA1L443 756 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 VAMP4O75379 141 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 FKBP5Q13451 457 aaPredicted RBP12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 ARID5BQ14865 1188 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 NUTM1Q86Y26 1132 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 MBIPQ9NS73 344 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 CLSTN1O94985 981 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 NCBP1Q09161 790 aaKnown RBP12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 NECAB1Q8N987 351 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 MYCBPQ99417 103 aaPredicted RBP12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 SMC3Q9UQE7 1217 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 TSPYL1Q9H0U9 437 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 ABCC2Q92887 1545 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 DISP1Q96F81 1524 aa12.04□□□□□ -0.48
PDGFRB-207ENST00000520579 GOLGA6L6A8MZA4 724 aa12.03□□□□□ -0.48
PDGFRB-207ENST00000520579 CEP170Q5SW79 1584 aa12.03□□□□□ -0.48
PDGFRB-207ENST00000520579 BRD1O95696 1058 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms