RNA–Protein interactions for RNA: ENST00000515494.5

CDK18-222, Transcript of cyclin dependent kinase 18, human

TSL 1 (best)

Gene CDK18, Length 3,756 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK18-222	ENST00000515494	ITPRIP	Q8IWB1	547 aa		13.42	□□□□□ -0.26
CDK18-222	ENST00000515494	C8orf58	Q8NAV2	365 aa		13.42	□□□□□ -0.26
CDK18-222	ENST00000515494	AXIN2	Q9Y2T1	843 aa		13.42	□□□□□ -0.26
CDK18-222	ENST00000515494	MVP	Q14764	893 aa	Known RBP	13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	MTHFSD	Q2M296	383 aa	Known RBP	13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	NBPF6	Q5VWK0	638 aa		13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	ATF7IP	Q6VMQ6	1270 aa		13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	NBPF4	Q96M43	638 aa		13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	IPO9	Q96P70	1041 aa	Known RBP	13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	IFT57	Q9NWB7	429 aa		13.41	□□□□□ -0.26
CDK18-222	ENST00000515494	DLG5	Q8TDM6	1919 aa		13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	VAMP4	O75379	141 aa		13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	ZNF853	P0CG23	659 aa		13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	KCNH5	Q8NCM2	988 aa		13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	CFAP44	Q96MT7	982 aa		13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	BACH2	Q9BYV9	841 aa		13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	DAXX	Q9UER7	740 aa	Predicted RBP	13.4	□□□□□ -0.26
CDK18-222	ENST00000515494	TMEM57	Q8N5G2	664 aa		13.4	□□□□□ -0.27
CDK18-222	ENST00000515494	IP6K1	Q92551	441 aa		13.4	□□□□□ -0.27
CDK18-222	ENST00000515494	NPHP3	Q7Z494	1330 aa		13.39	□□□□□ -0.27
CDK18-222	ENST00000515494	LMOD3	Q0VAK6	560 aa		13.39	□□□□□ -0.27
CDK18-222	ENST00000515494	HAP1	P54257	671 aa	Predicted RBP	13.39	□□□□□ -0.27
CDK18-222	ENST00000515494	CALD1	Q05682	793 aa	Known RBP	13.39	□□□□□ -0.27
CDK18-222	ENST00000515494	TWISTNB	Q3B726	338 aa	Predicted RBP	13.39	□□□□□ -0.27
CDK18-222	ENST00000515494	MS4A1	P11836	297 aa		13.38	□□□□□ -0.27
CDK18-222	ENST00000515494	ARHGEF25	Q86VW2	580 aa		13.38	□□□□□ -0.27
CDK18-222	ENST00000515494	ANKRD24	Q8TF21	1146 aa		13.37	□□□□□ -0.27
CDK18-222	ENST00000515494	MARF1	Q9Y4F3	1742 aa	Known RBP	13.37	□□□□□ -0.27
CDK18-222	ENST00000515494	IGSF1	Q8N6C5	1336 aa		13.37	□□□□□ -0.27
CDK18-222	ENST00000515494	CSB-PGBD3	P0DP91	1061 aa		13.36	□□□□□ -0.27
CDK18-222	ENST00000515494	KIF16B	Q96L93	1317 aa		13.36	□□□□□ -0.27
CDK18-222	ENST00000515494	XIRP1	Q702N8	1843 aa	Known RBP	13.36	□□□□□ -0.27
CDK18-222	ENST00000515494	ALDH1L2	Q3SY69	923 aa		13.35	□□□□□ -0.27
CDK18-222	ENST00000515494	RTF1	Q92541	710 aa	Known RBP	13.35	□□□□□ -0.27
CDK18-222	ENST00000515494	NLRP2	Q9NX02	1062 aa		13.35	□□□□□ -0.27
CDK18-222	ENST00000515494	MRPL50	Q8N5N7	158 aa	Known RBP	13.35	□□□□□ -0.27
CDK18-222	ENST00000515494	IPO8	O15397	1037 aa	Known RBP	13.35	□□□□□ -0.27
CDK18-222	ENST00000515494	ARHGEF10	O15013	1369 aa		13.34	□□□□□ -0.27
CDK18-222	ENST00000515494	LTN1	O94822	1766 aa		13.34	□□□□□ -0.27
CDK18-222	ENST00000515494	SPATA31A3	Q5VYP0	1347 aa		13.33	□□□□□ -0.27
CDK18-222	ENST00000515494	DDX19B	Q9UMR2	479 aa		13.33	□□□□□ -0.27
CDK18-222	ENST00000515494	NFAT5	O94916	1531 aa		13.33	□□□□□ -0.28
CDK18-222	ENST00000515494	RGPD1	P0DJD0	1748 aa		13.33	□□□□□ -0.28
CDK18-222	ENST00000515494	CHL1	O00533	1208 aa		13.33	□□□□□ -0.28
CDK18-222	ENST00000515494	DCC	P43146	1447 aa		13.33	□□□□□ -0.28
CDK18-222	ENST00000515494		A0A0U1RQG5	324 aa	Predicted RBP	13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	PIP4K2B	P78356	416 aa		13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	C1orf115	Q9H7X2	142 aa		13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	KDR	P35968	1356 aa		13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	USP19	O94966	1318 aa		13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	PDZRN3	Q9UPQ7	1066 aa		13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	NECTIN2	Q92692	538 aa		13.32	□□□□□ -0.28
CDK18-222	ENST00000515494	C8orf34	Q49A92	452 aa		13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	RWDD1	Q9H446	243 aa	Predicted RBP	13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	KIAA0232	Q92628	1395 aa		13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	NCOA3	Q9Y6Q9	1424 aa		13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	PRDM11	Q9NQV5	511 aa		13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	ZBTB40	Q9NUA8	1239 aa		13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	TSPYL4	Q9UJ04	414 aa		13.31	□□□□□ -0.28
CDK18-222	ENST00000515494	MPRIP	Q6WCQ1	1025 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	GAS2L2	Q8NHY3	880 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	ZNF428	Q96B54	188 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	LGR6	Q9HBX8	967 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	USP35	Q9P2H5	1018 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	TNS3	Q68CZ2	1445 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	MED1	Q15648	1581 aa	Predicted RBP	13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	STRN4	Q9NRL3	753 aa		13.3	□□□□□ -0.28
CDK18-222	ENST00000515494	RGPD2	P0DJD1	1756 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	GNAT3	A8MTJ3	354 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	FAM161A	Q3B820	660 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	IL17RE	Q8NFR9	667 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	CRB1	P82279	1406 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	KIF1A	Q12756	1690 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	AAMP	Q13685	434 aa		13.29	□□□□□ -0.28
CDK18-222	ENST00000515494	PXDN	Q92626	1479 aa		13.28	□□□□□ -0.28
CDK18-222	ENST00000515494	RTL1	A6NKG5	1358 aa		13.28	□□□□□ -0.28
CDK18-222	ENST00000515494	BRPF1	P55201	1214 aa	Predicted RBP	13.28	□□□□□ -0.28
CDK18-222	ENST00000515494	ERBB3	P21860	1342 aa		13.28	□□□□□ -0.28
CDK18-222	ENST00000515494	RGPD5	Q99666	1765 aa		13.27	□□□□□ -0.29
CDK18-222	ENST00000515494	KIF24	Q5T7B8	1368 aa		13.27	□□□□□ -0.29
CDK18-222	ENST00000515494	ZBTB7B	O15156	539 aa	Predicted RBP	13.27	□□□□□ -0.29
CDK18-222	ENST00000515494	SLC4A2	P04920	1241 aa		13.26	□□□□□ -0.29
CDK18-222	ENST00000515494	SOS2	Q07890	1332 aa	Predicted RBP	13.26	□□□□□ -0.29
CDK18-222	ENST00000515494	SLIT3	O75094	1523 aa		13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	ARHGAP45	Q92619	1136 aa		13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	G2E3	Q7L622	706 aa		13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	RAPGEF4	Q8WZA2	1011 aa		13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	ALS2	Q96Q42	1657 aa		13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	SEC24B	O95487	1268 aa		13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.25	□□□□□ -0.29
CDK18-222	ENST00000515494	ABCC4	O15439	1325 aa		13.24	□□□□□ -0.29
CDK18-222	ENST00000515494	TOM1L2	Q6ZVM7	507 aa		13.24	□□□□□ -0.29
CDK18-222	ENST00000515494	MAP3K5	Q99683	1374 aa		13.24	□□□□□ -0.29
CDK18-222	ENST00000515494	KCNQ3	O43525	872 aa		13.24	□□□□□ -0.29
CDK18-222	ENST00000515494	HDAC1	Q13547	482 aa	Predicted RBP	13.24	□□□□□ -0.29
CDK18-222	ENST00000515494	GSE1	Q14687	1217 aa		13.24	□□□□□ -0.29
CDK18-222	ENST00000515494	C1orf141	Q5JVX7	400 aa		13.24	□□□□□ -0.29
CDK18-222	ENST00000515494		F6X3S4	739 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms