RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 PLEKHG2Q9H7P9 1386 aa17.45■□□□□ 0.38
CLCN3-210ENST00000515420 RAPGEF4Q8WZA2 1011 aa17.45■□□□□ 0.38
CLCN3-210ENST00000515420 TNNT2P45379 298 aaPredicted RBP17.44■□□□□ 0.38
CLCN3-210ENST00000515420 PKD1L3Q7Z443 1732 aa17.44■□□□□ 0.38
CLCN3-210ENST00000515420 PLSCR1O15162 318 aa17.43■□□□□ 0.38
CLCN3-210ENST00000515420 ZCRB1Q8TBF4 217 aaKnown RBP17.43■□□□□ 0.38
CLCN3-210ENST00000515420 NUP188Q5SRE5 1749 aa17.43■□□□□ 0.38
CLCN3-210ENST00000515420 TATP17735 454 aaPredicted RBP17.42■□□□□ 0.38
CLCN3-210ENST00000515420 EZH2Q15910 746 aaKnown RBP17.42■□□□□ 0.38
CLCN3-210ENST00000515420 USHBP1Q8N6Y0 703 aa17.41■□□□□ 0.38
CLCN3-210ENST00000515420 KAT6BQ8WYB5 2073 aa17.4■□□□□ 0.38
CLCN3-210ENST00000515420 EIF4A2Q14240 407 aaKnown RBP17.4■□□□□ 0.38
CLCN3-210ENST00000515420 EYA1Q99502 592 aa17.4■□□□□ 0.38
CLCN3-210ENST00000515420 PCDH11XQ9BZA7 1347 aa17.4■□□□□ 0.38
CLCN3-210ENST00000515420 PCDH11YQ9BZA8 1340 aa17.4■□□□□ 0.38
CLCN3-210ENST00000515420 BTAF1O14981 1849 aa17.39■□□□□ 0.37
CLCN3-210ENST00000515420 IGSF1Q8N6C5 1336 aa17.39■□□□□ 0.37
CLCN3-210ENST00000515420 DOT1LQ8TEK3 1739 aa17.38■□□□□ 0.37
CLCN3-210ENST00000515420 DDX54Q8TDD1 881 aaKnown RBP17.38■□□□□ 0.37
CLCN3-210ENST00000515420 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLCN3-210ENST00000515420 KCNQ2O43526 872 aa17.36■□□□□ 0.37
CLCN3-210ENST00000515420 CC2D1BQ5T0F9 858 aaKnown RBP17.36■□□□□ 0.37
CLCN3-210ENST00000515420 PTF1AQ7RTS3 328 aa17.36■□□□□ 0.37
CLCN3-210ENST00000515420 ACSBG1Q96GR2 724 aa17.35■□□□□ 0.37
CLCN3-210ENST00000515420 SPG7Q9UQ90 795 aa17.34■□□□□ 0.37
CLCN3-210ENST00000515420 NBPF14Q5TI25 921 aa17.33■□□□□ 0.36
CLCN3-210ENST00000515420 KDRP35968 1356 aa17.32■□□□□ 0.36
CLCN3-210ENST00000515420 CYP27B1O15528 508 aa17.32■□□□□ 0.36
CLCN3-210ENST00000515420 MTHFSP49914 203 aa17.32■□□□□ 0.36
CLCN3-210ENST00000515420 IL13P35225 146 aa17.31■□□□□ 0.36
CLCN3-210ENST00000515420 ZEB1P37275 1124 aaPredicted RBP17.31■□□□□ 0.36
CLCN3-210ENST00000515420 NKX1-1Q15270 411 aaPredicted RBP17.31■□□□□ 0.36
CLCN3-210ENST00000515420 TXNRD1Q16881 649 aa17.31■□□□□ 0.36
CLCN3-210ENST00000515420 LRP5O75197 1615 aa17.31■□□□□ 0.36
CLCN3-210ENST00000515420 LY75O60449 1722 aa17.3■□□□□ 0.36
CLCN3-210ENST00000515420 TOGARAM1Q9Y4F4 1720 aa17.3■□□□□ 0.36
CLCN3-210ENST00000515420 PROM2Q8N271 834 aa17.3■□□□□ 0.36
CLCN3-210ENST00000515420 ITGB4P16144 1822 aa17.3■□□□□ 0.36
CLCN3-210ENST00000515420 PRIM1P49642 420 aaKnown RBP17.29■□□□□ 0.36
CLCN3-210ENST00000515420 R3HDM1Q15032 1099 aaKnown RBP17.29■□□□□ 0.36
CLCN3-210ENST00000515420 COL3A1P02461 1466 aaPredicted RBP17.29■□□□□ 0.36
CLCN3-210ENST00000515420 PAPPAQ13219 1627 aa17.29■□□□□ 0.36
CLCN3-210ENST00000515420 SRCAPQ6ZRS2 3230 aa17.28■□□□□ 0.36
CLCN3-210ENST00000515420 PSDA5PKW4 1024 aaPredicted RBP17.28■□□□□ 0.36
CLCN3-210ENST00000515420 AMOTQ4VCS5 1084 aa17.28■□□□□ 0.36
CLCN3-210ENST00000515420 IFNL2Q8IZJ0 200 aa17.28■□□□□ 0.36
CLCN3-210ENST00000515420 SYTL4Q96C24 671 aaPredicted RBP17.28■□□□□ 0.36
CLCN3-210ENST00000515420 DIAPH1O60610 1272 aaKnown RBP17.26■□□□□ 0.35
CLCN3-210ENST00000515420 PHKG2P15735 406 aa17.26■□□□□ 0.35
CLCN3-210ENST00000515420 PLEKHO1Q53GL0 409 aaPredicted RBP17.26■□□□□ 0.35
CLCN3-210ENST00000515420 SLC27A3Q5K4L6 730 aa17.26■□□□□ 0.35
CLCN3-210ENST00000515420 SULT6B1Q6IMI4 303 aa17.25■□□□□ 0.35
CLCN3-210ENST00000515420 HSP90AB1P08238 724 aaKnown RBP17.24■□□□□ 0.35
CLCN3-210ENST00000515420 HMGB2P26583 209 aaKnown RBP17.24■□□□□ 0.35
CLCN3-210ENST00000515420 AEBP1Q8IUX7 1158 aa17.24■□□□□ 0.35
CLCN3-210ENST00000515420 ANO8Q9HCE9 1232 aaPredicted RBP17.24■□□□□ 0.35
CLCN3-210ENST00000515420 CASZ1Q86V15 1759 aa17.23■□□□□ 0.35
CLCN3-210ENST00000515420 QSER1Q2KHR3 1735 aa17.23■□□□□ 0.35
CLCN3-210ENST00000515420 DCAF5Q96JK2 942 aa17.22■□□□□ 0.35
CLCN3-210ENST00000515420 CFAP53Q96M91 514 aa17.22■□□□□ 0.35
CLCN3-210ENST00000515420 STK32BQ9NY57 414 aa17.22■□□□□ 0.35
CLCN3-210ENST00000515420 PPP2R1AP30153 589 aa17.21■□□□□ 0.35
CLCN3-210ENST00000515420 SLC15A2Q16348 729 aa17.21■□□□□ 0.35
CLCN3-210ENST00000515420 ZNF530Q6P9A1 599 aaPredicted RBP17.21■□□□□ 0.35
CLCN3-210ENST00000515420 SMARCC1Q92922 1105 aaPredicted RBP17.21■□□□□ 0.35
CLCN3-210ENST00000515420 LRRC4BQ9NT99 713 aa17.21■□□□□ 0.35
CLCN3-210ENST00000515420 CNGB1Q14028 1251 aaPredicted RBP17.2■□□□□ 0.34
CLCN3-210ENST00000515420 MPRIPQ6WCQ1 1025 aa17.2■□□□□ 0.34
CLCN3-210ENST00000515420 TAF1LQ8IZX4 1826 aa17.19■□□□□ 0.34
CLCN3-210ENST00000515420 PALLDQ8WX93 1383 aa17.19■□□□□ 0.34
CLCN3-210ENST00000515420 ERVV-2B6SEH9 535 aa17.19■□□□□ 0.34
CLCN3-210ENST00000515420 C1orf141Q5JVX7 400 aa17.19■□□□□ 0.34
CLCN3-210ENST00000515420 TMOD3Q9NYL9 352 aa17.19■□□□□ 0.34
CLCN3-210ENST00000515420 SCN11AQ9UI33 1791 aa17.19■□□□□ 0.34
CLCN3-210ENST00000515420 C5P01031 1676 aa17.18■□□□□ 0.34
CLCN3-210ENST00000515420 PIGBQ92521 554 aa17.18■□□□□ 0.34
CLCN3-210ENST00000515420 KDM6AO15550 1401 aaPredicted RBP17.18■□□□□ 0.34
CLCN3-210ENST00000515420 VIRMAQ69YN4 1812 aaKnown RBP17.17■□□□□ 0.34
CLCN3-210ENST00000515420 HMOX1P09601 288 aa17.17■□□□□ 0.34
CLCN3-210ENST00000515420 CCNL1Q9UK58 526 aaPredicted RBP17.17■□□□□ 0.34
CLCN3-210ENST00000515420 NUDCQ9Y266 331 aa17.17■□□□□ 0.34
CLCN3-210ENST00000515420 ZNF831Q5JPB2 1677 aa17.16■□□□□ 0.34
CLCN3-210ENST00000515420 AKAP4Q5JQC9 854 aa17.16■□□□□ 0.34
CLCN3-210ENST00000515420 AKT1S1Q96B36 256 aa17.16■□□□□ 0.34
CLCN3-210ENST00000515420 ADAMTS7Q9UKP4 1686 aa17.16■□□□□ 0.34
CLCN3-210ENST00000515420 TUBGCP6Q96RT7 1819 aa17.15■□□□□ 0.34
CLCN3-210ENST00000515420 U2SURPO15042 1029 aaKnown RBP17.15■□□□□ 0.34
CLCN3-210ENST00000515420 RALBP1Q15311 655 aa17.14■□□□□ 0.33
CLCN3-210ENST00000515420 ZNF827Q17R98 1081 aa17.14■□□□□ 0.33
CLCN3-210ENST00000515420 SPON1Q9HCB6 807 aa17.14■□□□□ 0.33
CLCN3-210ENST00000515420 MRC1P22897 1456 aa17.13■□□□□ 0.33
CLCN3-210ENST00000515420 DDX10Q13206 875 aaKnown RBP17.13■□□□□ 0.33
CLCN3-210ENST00000515420 CABP4P57796 275 aa17.12■□□□□ 0.33
CLCN3-210ENST00000515420 C4BP0C0L5 1744 aa17.12■□□□□ 0.33
CLCN3-210ENST00000515420 MTHFSDQ2M296 383 aaKnown RBP17.11■□□□□ 0.33
CLCN3-210ENST00000515420 GAS2L2Q8NHY3 880 aa17.11■□□□□ 0.33
CLCN3-210ENST00000515420 ASAP1Q9ULH1 1129 aa17.11■□□□□ 0.33
CLCN3-210ENST00000515420 CICQ96RK0 1608 aaPredicted RBP17.1■□□□□ 0.33
CLCN3-210ENST00000515420 LOC102724428A0A0B4J2F2 783 aa17.1■□□□□ 0.33
CLCN3-210ENST00000515420 FCHSD2O94868 740 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms