RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 CYLDQ9NQC7 956 aa9.73□□□□□ -0.85
HMGCS1-207ENST00000514610 PCDHGA11Q9Y5H2 935 aa9.73□□□□□ -0.85
HMGCS1-207ENST00000514610 CARNS1A5YM72 827 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 ZBTB7BO15156 539 aaPredicted RBP9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 GFRA3O60609 400 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 LILRA1O75019 489 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 SMPD1P17405 629 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 GTF2IP78347 998 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 PRR20EP86478 221 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 PRR20CP86479 221 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 PRR20DP86480 221 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 PRR20BP86481 221 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 PRR20AP86496 221 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 DHX9Q08211 1270 aaKnown RBP9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 CYP4X1Q8N118 509 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 STK32AQ8WU08 396 aa9.72□□□□□ -0.85
HMGCS1-207ENST00000514610 TTC24A2A3L6 582 aaPredicted RBP9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 DKK1O94907 266 aa9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 USP4Q13107 963 aa9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 ELOAQ14241 798 aaKnown RBP9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 TRIM50Q86XT4 487 aa9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 ZNF594Q96JF6 807 aaPredicted RBP9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 OSBPL3Q9H4L5 887 aa9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 NOVA2Q9UNW9 492 aaKnown RBP9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 WASF2Q9Y6W5 498 aa9.71□□□□□ -0.86
HMGCS1-207ENST00000514610 ADD1P35611 737 aaKnown RBP9.7□□□□□ -0.86
HMGCS1-207ENST00000514610 CC2D2BQ6DHV5 1058 aa9.7□□□□□ -0.86
HMGCS1-207ENST00000514610 LARP1Q6PKG0 1096 aaKnown RBP9.7□□□□□ -0.86
HMGCS1-207ENST00000514610 KLF16Q9BXK1 252 aaPredicted RBP9.7□□□□□ -0.86
HMGCS1-207ENST00000514610 DNAAF2Q9NVR5 837 aaKnown RBP9.7□□□□□ -0.86
HMGCS1-207ENST00000514610 TMEM88BA6NKF7 163 aa9.69□□□□□ -0.86
HMGCS1-207ENST00000514610 MYCP01106 439 aaPredicted RBP9.69□□□□□ -0.86
HMGCS1-207ENST00000514610 TMEM164Q5U3C3 297 aa9.69□□□□□ -0.86
HMGCS1-207ENST00000514610 STAU1O95793 577 aaKnown RBP9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 CSB-PGBD3P0DP91 1061 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 ATP1A2P50993 1020 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 MYT1Q01538 1121 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 DPYDQ12882 1025 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 ANKMY2Q8IV38 441 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 LARGE2Q8N3Y3 721 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 SIRT1Q96EB6 747 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 EMILIN1Q9Y6C2 1016 aa9.68□□□□□ -0.86
HMGCS1-207ENST00000514610 SIX5Q8N196 739 aa9.67□□□□□ -0.86
HMGCS1-207ENST00000514610 HPS1Q92902 700 aa9.67□□□□□ -0.86
HMGCS1-207ENST00000514610 ITPKCQ96DU7 683 aa9.67□□□□□ -0.86
HMGCS1-207ENST00000514610 TRAIPQ9BWF2 469 aa9.67□□□□□ -0.86
HMGCS1-207ENST00000514610 PGPEP1Q9NXJ5 209 aa9.67□□□□□ -0.86
HMGCS1-207ENST00000514610 NRG2O14511 850 aaPredicted RBP9.66□□□□□ -0.86
HMGCS1-207ENST00000514610 CBLBQ13191 982 aa9.66□□□□□ -0.86
HMGCS1-207ENST00000514610 CCDC102BQ68D86 513 aa9.66□□□□□ -0.86
HMGCS1-207ENST00000514610 TPCN2Q8NHX9 752 aa9.66□□□□□ -0.86
HMGCS1-207ENST00000514610 ZFAND3Q9H8U3 227 aa9.66□□□□□ -0.86
HMGCS1-207ENST00000514610 USTQ9Y2C2 406 aa9.66□□□□□ -0.86
HMGCS1-207ENST00000514610 ZIC2O95409 532 aaPredicted RBP9.65□□□□□ -0.86
HMGCS1-207ENST00000514610 PDIA4P13667 645 aaKnown RBP9.65□□□□□ -0.86
HMGCS1-207ENST00000514610 TIMP2P16035 220 aa9.65□□□□□ -0.86
HMGCS1-207ENST00000514610 PSME1Q06323 249 aa9.65□□□□□ -0.86
HMGCS1-207ENST00000514610 FAM69CQ0P6D2 419 aa9.65□□□□□ -0.86
HMGCS1-207ENST00000514610 PDZRN3Q9UPQ7 1066 aa9.65□□□□□ -0.86
HMGCS1-207ENST00000514610 SFI1A8K8P3 1242 aa9.64□□□□□ -0.87
HMGCS1-207ENST00000514610 SCNN1DP51172 638 aa9.64□□□□□ -0.87
HMGCS1-207ENST00000514610 WDR4P57081 412 aaKnown RBP9.64□□□□□ -0.87
HMGCS1-207ENST00000514610 KDF1Q8NAX2 398 aaPredicted RBP9.64□□□□□ -0.87
HMGCS1-207ENST00000514610 FAM200AQ8TCP9 573 aa9.64□□□□□ -0.87
HMGCS1-207ENST00000514610 SLAIN2Q9P270 581 aa9.64□□□□□ -0.87
HMGCS1-207ENST00000514610 TMEM229AB2RXF0 380 aa9.63□□□□□ -0.87
HMGCS1-207ENST00000514610 Q6ZVU0 165 aa9.62□□□□□ -0.87
HMGCS1-207ENST00000514610 CYP2U1Q7Z449 544 aa9.62□□□□□ -0.87
HMGCS1-207ENST00000514610 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.62□□□□□ -0.87
HMGCS1-207ENST00000514610 ESF1Q9H501 851 aaKnown RBP9.62□□□□□ -0.87
HMGCS1-207ENST00000514610 ADH1AP07327 375 aa9.61□□□□□ -0.87
HMGCS1-207ENST00000514610 SEC13P55735 322 aa9.61□□□□□ -0.87
HMGCS1-207ENST00000514610 ETNK1Q9HBU6 452 aa9.61□□□□□ -0.87
HMGCS1-207ENST00000514610 ZNF358Q9NW07 568 aa9.61□□□□□ -0.87
HMGCS1-207ENST00000514610 GDF10P55107 478 aa9.6□□□□□ -0.87
HMGCS1-207ENST00000514610 AGBL1Q96MI9 1066 aa9.6□□□□□ -0.87
HMGCS1-207ENST00000514610 RAB6BQ9NRW1 208 aa9.6□□□□□ -0.87
HMGCS1-207ENST00000514610 LGR5O75473 907 aa9.59□□□□□ -0.87
HMGCS1-207ENST00000514610 TRIM52Q96A61 297 aa9.59□□□□□ -0.87
HMGCS1-207ENST00000514610 ARHGEF10LQ9HCE6 1279 aa9.59□□□□□ -0.87
HMGCS1-207ENST00000514610 WASLO00401 505 aaPredicted RBP9.58□□□□□ -0.88
HMGCS1-207ENST00000514610 GNRH1P01148 92 aa9.58□□□□□ -0.88
HMGCS1-207ENST00000514610 TSEN2Q8NCE0 465 aaKnown RBP9.58□□□□□ -0.88
HMGCS1-207ENST00000514610 FAM187AA6NFU0 413 aa9.57□□□□□ -0.88
HMGCS1-207ENST00000514610 IL2RAP01589 272 aa9.57□□□□□ -0.88
HMGCS1-207ENST00000514610 INHAP05111 366 aa9.57□□□□□ -0.88
HMGCS1-207ENST00000514610 PDE4CQ08493 712 aa9.57□□□□□ -0.88
HMGCS1-207ENST00000514610 MEIOBQ8N635 442 aa9.57□□□□□ -0.88
HMGCS1-207ENST00000514610 CLP1Q92989 425 aaKnown RBP9.57□□□□□ -0.88
HMGCS1-207ENST00000514610 PTGIRP43119 386 aa9.56□□□□□ -0.88
HMGCS1-207ENST00000514610 RELBQ01201 579 aa9.56□□□□□ -0.88
HMGCS1-207ENST00000514610 SWI5Q1ZZU3 235 aa9.56□□□□□ -0.88
HMGCS1-207ENST00000514610 SERTAD1Q9UHV2 236 aa9.56□□□□□ -0.88
HMGCS1-207ENST00000514610 RBM19Q9Y4C8 960 aaKnown RBP9.56□□□□□ -0.88
HMGCS1-207ENST00000514610 A0A1W2PRU2 124 aa9.55□□□□□ -0.88
HMGCS1-207ENST00000514610 M0R2N6 131 aa9.55□□□□□ -0.88
HMGCS1-207ENST00000514610 CAPN5O15484 640 aaPredicted RBP9.55□□□□□ -0.88
HMGCS1-207ENST00000514610 PHLDB3Q6NSJ2 640 aa9.55□□□□□ -0.88
HMGCS1-207ENST00000514610 XAGE2Q96GT9 111 aa9.55□□□□□ -0.88
HMGCS1-207ENST00000514610 AVPP01185 164 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms