RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 KRT18P05783 430 aaKnown RBP12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 TRIM22Q8IYM9 498 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 SEPT7Q16181 437 aaKnown RBP12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 JAKMIP3Q5VZ66 844 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 ZFP91Q96JP5 570 aaPredicted RBP12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 TMX1Q9H3N1 280 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 EXOC6BQ9Y2D4 811 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 SYCP1Q15431 976 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 KIF4BQ2VIQ3 1234 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 BAG4O95429 457 aaKnown RBP12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 PSME1Q06323 249 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 ZRSR2Q15696 482 aaKnown RBP12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 CCDC148Q8NFR7 591 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 DYDC1Q8WWB3 177 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 RAPGEF4Q8WZA2 1011 aa12.17□□□□□ -0.46
PDLIM3-209ENST00000514142 SRGAP3O43295 1099 aa12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 SMARCA5O60264 1052 aaPredicted RBP12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 CASQ1P31415 396 aa12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 DDX54Q8TDD1 881 aaKnown RBP12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 RBM25P49756 843 aaKnown RBP12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 AACSQ86V21 672 aa12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 RPAP2Q8IXW5 612 aaPredicted RBP12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 GAS2L2Q8NHY3 880 aa12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 NUTM1Q86Y26 1132 aa12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 ZNF830Q96NB3 372 aaPredicted RBP12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 BBXQ8WY36 941 aaPredicted RBP12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 ANO10Q9NW15 660 aa12.16□□□□□ -0.46
PDLIM3-209ENST00000514142 INCENPQ9NQS7 918 aa12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 EIF5P55010 431 aaKnown RBP12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 SULT6B1Q6IMI4 303 aa12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 PRIMPOLQ96LW4 560 aa12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 TIGD1Q96MW7 591 aa12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 NUP133Q8WUM0 1156 aa12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 ZHX3Q9H4I2 956 aa12.15□□□□□ -0.46
PDLIM3-209ENST00000514142 KIF5CO60282 957 aa12.15□□□□□ -0.47
PDLIM3-209ENST00000514142 LMAN1P49257 510 aa12.15□□□□□ -0.47
PDLIM3-209ENST00000514142 NLRP6P59044 892 aa12.15□□□□□ -0.47
PDLIM3-209ENST00000514142 TICAM2Q86XR7 235 aa12.15□□□□□ -0.47
PDLIM3-209ENST00000514142 SCAND2PQ9GZW5 306 aaPredicted RBP12.15□□□□□ -0.47
PDLIM3-209ENST00000514142 KLHL40Q2TBA0 621 aa12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 TXLNBQ8N3L3 684 aa12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 RARSP54136 660 aaKnown RBP12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 TTC39AQ5SRH9 613 aa12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 RNF187Q5TA31 235 aaPredicted RBP12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 TOP1P11387 765 aaKnown RBP12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 ZSCAN23Q3MJ62 389 aa12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 CCDC158Q5M9N0 1113 aa12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 NCOA2Q15596 1464 aa12.14□□□□□ -0.47
PDLIM3-209ENST00000514142 CUX1P39880 1505 aa12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 CCDC69A6NI79 296 aa12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 PRPF40BQ6NWY9 871 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 LARP6Q9BRS8 491 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 NLRP2Q9NX02 1062 aa12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 BMS1Q14692 1282 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 RBM33Q96EV2 1170 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 PDIA4P13667 645 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 MAP9Q49MG5 647 aa12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 IGF1RP08069 1367 aa12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 RAI14Q9P0K7 980 aa12.13□□□□□ -0.47
PDLIM3-209ENST00000514142 IKQ13123 557 aaPredicted RBP12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 KRT32Q14532 448 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 SSH1Q8WYL5 1049 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 TAF4BQ92750 862 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 TBC1D32Q96NH3 1257 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 FAM177BA6PVY3 158 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 HCLS1P14317 486 aaPredicted RBP12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 KLHL10Q6JEL2 608 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 SMARCC1Q92922 1105 aaPredicted RBP12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 MX1P20591 662 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 CEP135Q66GS9 1140 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 KRT222Q8N1A0 295 aa12.12□□□□□ -0.47
PDLIM3-209ENST00000514142 SCAPERQ9BY12 1400 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 FKBP4Q02790 459 aaKnown RBP eCLIP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 CPLX3Q8WVH0 158 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 IGSF3O75054 1194 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 SNW1Q13573 536 aaKnown RBP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 NOLC1Q14978 699 aaKnown RBP eCLIP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 SEPT11Q9NVA2 429 aaKnown RBP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 TFIP11Q9UBB9 837 aaKnown RBP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 NOL7Q9UMY1 257 aaKnown RBP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 NEMFO60524 1076 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 CDKL5O76039 1030 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 IGHDP01880 384 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 CCDC113Q9H0I3 377 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 TMC6Q7Z403 805 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 ZSWIM4Q9H7M6 989 aa12.11□□□□□ -0.47
PDLIM3-209ENST00000514142 TMPOP42166 694 aaKnown RBP12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 GUCY1B3Q02153 619 aa12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 MAP2K1Q02750 393 aaPredicted RBP12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 GOLGA6L10A0A0M3HER8 536 aa12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 THUMPD2Q9BTF0 503 aaKnown RBP12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 ZNF165P49910 485 aa12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 ERBINQ96RT1 1412 aa12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 SSBP05455 408 aaKnown RBP eCLIP12.1□□□□□ -0.47
PDLIM3-209ENST00000514142 RAD54L2Q9Y4B4 1467 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 DNA2P51530 1060 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 MNAT1P51948 309 aa12.09□□□□□ -0.47
PDLIM3-209ENST00000514142 FAM69CQ0P6D2 419 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms