RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 KLF16Q9BXK1 252 aaPredicted RBP10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 ZMIZ1Q9ULJ6 1067 aa10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 MAP4K5Q9Y4K4 846 aa10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 ELOAQ14241 798 aaKnown RBP10.33□□□□□ -0.76
PDLIM3-208ENST00000512380 ARID5BQ14865 1188 aa10.33□□□□□ -0.76
PDLIM3-208ENST00000512380 LCE2AQ5TA79 106 aaPredicted RBP10.33□□□□□ -0.76
PDLIM3-208ENST00000512380 FAM177A1Q8N128 213 aaPredicted RBP10.33□□□□□ -0.76
PDLIM3-208ENST00000512380 ZC3H4Q9UPT8 1303 aaKnown RBP10.33□□□□□ -0.76
PDLIM3-208ENST00000512380 WDR4P57081 412 aaKnown RBP10.32□□□□□ -0.76
PDLIM3-208ENST00000512380 KANK4Q5T7N3 995 aaPredicted RBP10.32□□□□□ -0.76
PDLIM3-208ENST00000512380 PHLDB3Q6NSJ2 640 aa10.32□□□□□ -0.76
PDLIM3-208ENST00000512380 FKBPLQ9UIM3 349 aa10.32□□□□□ -0.76
PDLIM3-208ENST00000512380 MAGEB6P1A0A0J9YX57 407 aa10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 NR3C2P08235 984 aa10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 ZNF16P17020 682 aaPredicted RBP10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 GRM5P41594 1212 aa10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 TREML4Q6UXN2 200 aa10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 BCL2L13Q9BXK5 485 aa10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 NOVA2Q9UNW9 492 aaKnown RBP10.31□□□□□ -0.76
PDLIM3-208ENST00000512380 ARID4AP29374 1257 aaPredicted RBP10.3□□□□□ -0.76
PDLIM3-208ENST00000512380 PDXDC2PQ6P474 469 aa10.3□□□□□ -0.76
PDLIM3-208ENST00000512380 EIF4G2P78344 907 aaKnown RBP eCLIP10.29□□□□□ -0.76
PDLIM3-208ENST00000512380 NR6A1Q15406 480 aa10.29□□□□□ -0.76
PDLIM3-208ENST00000512380 ERFEQ4G0M1 354 aa10.29□□□□□ -0.76
PDLIM3-208ENST00000512380 PNMA1Q8ND90 353 aa10.29□□□□□ -0.76
PDLIM3-208ENST00000512380 SIRT1Q96EB6 747 aa10.29□□□□□ -0.76
PDLIM3-208ENST00000512380 FSHRP23945 695 aa10.28□□□□□ -0.76
PDLIM3-208ENST00000512380 GIPC2Q8TF65 315 aa10.28□□□□□ -0.76
PDLIM3-208ENST00000512380 CARD14Q9BXL6 1004 aa10.28□□□□□ -0.76
PDLIM3-208ENST00000512380 ZIC2O95409 532 aaPredicted RBP10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 TCF3P15923 654 aa10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 NFX1Q12986 1120 aaKnown RBP10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 NOM1Q5C9Z4 860 aaKnown RBP10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 MRPL14Q6P1L8 145 aaKnown RBP10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 VASH1Q7L8A9 365 aaPredicted RBP10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 ARHGAP9Q9BRR9 750 aa10.27□□□□□ -0.77
PDLIM3-208ENST00000512380 SOWAHDA6NJG2 315 aa10.26□□□□□ -0.77
PDLIM3-208ENST00000512380 SSFA2P28290 1259 aa10.26□□□□□ -0.77
PDLIM3-208ENST00000512380 ITPKCQ96DU7 683 aa10.26□□□□□ -0.77
PDLIM3-208ENST00000512380 ZFP42Q96MM3 310 aa10.26□□□□□ -0.77
PDLIM3-208ENST00000512380 PIK3CDO00329 1044 aa10.25□□□□□ -0.77
PDLIM3-208ENST00000512380 WFS1O76024 890 aa10.25□□□□□ -0.77
PDLIM3-208ENST00000512380 MARSP56192 900 aaKnown RBP10.25□□□□□ -0.77
PDLIM3-208ENST00000512380 ZFAND3Q9H8U3 227 aa10.25□□□□□ -0.77
PDLIM3-208ENST00000512380 GPSM3Q9Y4H4 160 aa10.25□□□□□ -0.77
PDLIM3-208ENST00000512380 CDV3Q9UKY7 258 aaKnown RBP10.24□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L3A6NCW0 530 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L4A6NCW7 530 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 TERTO14746 1132 aaKnown RBP10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 SERPINB4P48594 390 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 SCARF1Q14162 830 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L2Q6R6M4 530 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L1Q7RTZ2 530 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 SLC10A4Q96EP9 437 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 OCSTAMPQ9BR26 566 aa10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 BIN2Q9UBW5 565 aaPredicted RBP10.23□□□□□ -0.77
PDLIM3-208ENST00000512380 SKIP12755 728 aa10.22□□□□□ -0.77
PDLIM3-208ENST00000512380 PTK2Q05397 1052 aa10.22□□□□□ -0.77
PDLIM3-208ENST00000512380 CCDC116Q8IYX3 515 aa10.22□□□□□ -0.77
PDLIM3-208ENST00000512380 MEIOBQ8N635 442 aa10.22□□□□□ -0.77
PDLIM3-208ENST00000512380 PURBQ96QR8 312 aaKnown RBP10.22□□□□□ -0.77
PDLIM3-208ENST00000512380 SLAIN2Q9P270 581 aa10.22□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L15C9J2P7 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L10C9JJH3 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L13C9JLJ4 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L12C9JPN9 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L11C9JVI0 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L21D6R901 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L18D6R9N7 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L22D6RA61 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L17D6RBQ6 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L19D6RCP7 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L20D6RJB6 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 USP17L24Q0WX57 530 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 ZBTB33Q86T24 672 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 EMILIN1Q9Y6C2 1016 aa10.21□□□□□ -0.77
PDLIM3-208ENST00000512380 NR1H3Q13133 447 aa10.2□□□□□ -0.78
PDLIM3-208ENST00000512380 CCDC125Q86Z20 511 aa10.2□□□□□ -0.78
PDLIM3-208ENST00000512380 DEPDC4Q8N2C3 294 aa10.2□□□□□ -0.78
PDLIM3-208ENST00000512380 DRC1Q96MC2 740 aa10.2□□□□□ -0.78
PDLIM3-208ENST00000512380 ANKRD33BA6NCL7 494 aa10.19□□□□□ -0.78
PDLIM3-208ENST00000512380 FAM196BA6NMK8 535 aa10.19□□□□□ -0.78
PDLIM3-208ENST00000512380 USP17L5A8MUK1 530 aa10.19□□□□□ -0.78
PDLIM3-208ENST00000512380 CRTC2Q53ET0 693 aaPredicted RBP10.19□□□□□ -0.78
PDLIM3-208ENST00000512380 LCE2CQ5TA81 110 aa10.19□□□□□ -0.78
PDLIM3-208ENST00000512380 ADAM32Q8TC27 787 aa10.19□□□□□ -0.78
PDLIM3-208ENST00000512380 ZNF326Q5BKZ1 582 aaKnown RBP10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 NPAS3Q8IXF0 933 aa10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 LINC00528Q8N1L1 170 aa10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 NFATC2IPQ8NCF5 419 aa10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 FAM200AQ8TCP9 573 aa10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 KCTD15Q96SI1 283 aaPredicted RBP10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 NXF1Q9UBU9 619 aaKnown RBP10.18□□□□□ -0.78
PDLIM3-208ENST00000512380 WIPF1O43516 503 aa10.17□□□□□ -0.78
PDLIM3-208ENST00000512380 ATP2B4P23634 1241 aa10.17□□□□□ -0.78
PDLIM3-208ENST00000512380 LARP1Q6PKG0 1096 aaKnown RBP10.17□□□□□ -0.78
PDLIM3-208ENST00000512380 NPAS4Q8IUM7 802 aa10.17□□□□□ -0.78
PDLIM3-208ENST00000512380 PLEKHM2Q8IWE5 1019 aa10.17□□□□□ -0.78
PDLIM3-208ENST00000512380 SREK1Q8WXA9 508 aaKnown RBP10.17□□□□□ -0.78
PDLIM3-208ENST00000512380 CLP1Q92989 425 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms