RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 TTC21BQ7Z4L5 1316 aa13.4□□□□□ -0.26
NUP54-211ENST00000512151 TOMM70O94826 608 aa13.4□□□□□ -0.26
NUP54-211ENST00000512151 SLC34A2O95436 690 aa13.4□□□□□ -0.26
NUP54-211ENST00000512151 KCNH5Q8NCM2 988 aa13.4□□□□□ -0.26
NUP54-211ENST00000512151 ERBB3P21860 1342 aa13.39□□□□□ -0.27
NUP54-211ENST00000512151 IGSF1Q8N6C5 1336 aa13.39□□□□□ -0.27
NUP54-211ENST00000512151 PRIM1P49642 420 aaKnown RBP13.39□□□□□ -0.27
NUP54-211ENST00000512151 NBPF1Q3BBV0 1214 aa13.38□□□□□ -0.27
NUP54-211ENST00000512151 DDX54Q8TDD1 881 aaKnown RBP13.38□□□□□ -0.27
NUP54-211ENST00000512151 NMRK2Q9NPI5 230 aa13.38□□□□□ -0.27
NUP54-211ENST00000512151 CCNL1Q9UK58 526 aaPredicted RBP13.38□□□□□ -0.27
NUP54-211ENST00000512151 CICQ96RK0 1608 aaPredicted RBP13.37□□□□□ -0.27
NUP54-211ENST00000512151 DOT1LQ8TEK3 1739 aa13.36□□□□□ -0.27
NUP54-211ENST00000512151 SYTL4Q96C24 671 aaPredicted RBP13.36□□□□□ -0.27
NUP54-211ENST00000512151 STAC3Q96MF2 364 aa13.36□□□□□ -0.27
NUP54-211ENST00000512151 CENPJQ9HC77 1338 aaPredicted RBP13.36□□□□□ -0.27
NUP54-211ENST00000512151 ANKRD36BQ8N2N9 1353 aa13.35□□□□□ -0.27
NUP54-211ENST00000512151 AMIGO3Q86WK7 504 aa13.34□□□□□ -0.27
NUP54-211ENST00000512151 ANKRD24Q8TF21 1146 aa13.34□□□□□ -0.27
NUP54-211ENST00000512151 SMIM5Q71RC9 77 aa13.33□□□□□ -0.27
NUP54-211ENST00000512151 RBM46Q8TBY0 533 aaKnown RBP13.33□□□□□ -0.27
NUP54-211ENST00000512151 USP54Q70EL1 1684 aa13.33□□□□□ -0.28
NUP54-211ENST00000512151 KIAA1210Q9ULL0 1709 aa13.32□□□□□ -0.28
NUP54-211ENST00000512151 TTC21AQ8NDW8 1320 aa13.32□□□□□ -0.28
NUP54-211ENST00000512151 C5P01031 1676 aa13.32□□□□□ -0.28
NUP54-211ENST00000512151 LTN1O94822 1766 aa13.31□□□□□ -0.28
NUP54-211ENST00000512151 TOGARAM1Q9Y4F4 1720 aa13.31□□□□□ -0.28
NUP54-211ENST00000512151 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
NUP54-211ENST00000512151 TAF1LQ8IZX4 1826 aa13.29□□□□□ -0.28
NUP54-211ENST00000512151 KIAA1551Q9HCM1 1747 aa13.29□□□□□ -0.28
NUP54-211ENST00000512151 HSPA1AP0DMV8 641 aaKnown RBP13.29□□□□□ -0.28
NUP54-211ENST00000512151 HSPA1BP0DMV9 641 aaKnown RBP13.29□□□□□ -0.28
NUP54-211ENST00000512151 USP31Q70CQ4 1352 aa13.28□□□□□ -0.28
NUP54-211ENST00000512151 NME9Q86XW9 330 aa13.28□□□□□ -0.28
NUP54-211ENST00000512151 USP47Q96K76 1375 aa13.28□□□□□ -0.28
NUP54-211ENST00000512151 PXDNLA1KZ92 1463 aa13.27□□□□□ -0.28
NUP54-211ENST00000512151 FSTL1Q12841 308 aa13.27□□□□□ -0.29
NUP54-211ENST00000512151 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.27□□□□□ -0.292e-11■■□□□ 11.8
NUP54-211ENST00000512151 FLAD1Q8NFF5 587 aa13.27□□□□□ -0.29
NUP54-211ENST00000512151 KTN1Q86UP2 1357 aaKnown RBP13.27□□□□□ -0.29
NUP54-211ENST00000512151 FAM208AQ9UK61 1670 aaKnown RBP13.26□□□□□ -0.29
NUP54-211ENST00000512151 LTV1Q96GA3 475 aaPredicted RBP13.26□□□□□ -0.29
NUP54-211ENST00000512151 PCNTO95613 3336 aa13.26□□□□□ -0.29
NUP54-211ENST00000512151 RAB3GAP2Q9H2M9 1393 aa13.26□□□□□ -0.29
NUP54-211ENST00000512151 MEGF6O75095 1541 aa13.26□□□□□ -0.29
NUP54-211ENST00000512151 C4BP0C0L5 1744 aa13.26□□□□□ -0.29
NUP54-211ENST00000512151 MON2Q7Z3U7 1717 aa13.26□□□□□ -0.29
NUP54-211ENST00000512151 N4BP2Q86UW6 1770 aaPredicted RBP13.25□□□□□ -0.29
NUP54-211ENST00000512151 UBR3Q6ZT12 1888 aa13.25□□□□□ -0.29
NUP54-211ENST00000512151 PHF14O94880 888 aa13.25□□□□□ -0.29
NUP54-211ENST00000512151 EVC2Q86UK5 1308 aa13.25□□□□□ -0.29
NUP54-211ENST00000512151 ARHGAP27Q6ZUM4 889 aa13.24□□□□□ -0.29
NUP54-211ENST00000512151 KCPQ6ZWJ8 1503 aa13.24□□□□□ -0.29
NUP54-211ENST00000512151 ZCRB1Q8TBF4 217 aaKnown RBP13.24□□□□□ -0.29
NUP54-211ENST00000512151 BCS1LQ9Y276 419 aa13.24□□□□□ -0.29
NUP54-211ENST00000512151 RGPD2P0DJD1 1756 aa13.23□□□□□ -0.29
NUP54-211ENST00000512151 PALLDQ8WX93 1383 aa13.23□□□□□ -0.29
NUP54-211ENST00000512151 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.23□□□□□ -0.29
NUP54-211ENST00000512151 C9orf131Q5VYM1 1079 aa13.23□□□□□ -0.29
NUP54-211ENST00000512151 C16orf71Q8IYS4 520 aaPredicted RBP13.23□□□□□ -0.29
NUP54-211ENST00000512151 KIF13BQ9NQT8 1826 aa13.23□□□□□ -0.29
NUP54-211ENST00000512151 SBNO2Q9Y2G9 1366 aa13.22□□□□□ -0.29
NUP54-211ENST00000512151 A0A0G2JLW4 131 aa13.22□□□□□ -0.29
NUP54-211ENST00000512151 IP6K1Q92551 441 aa13.22□□□□□ -0.29
NUP54-211ENST00000512151 AK7Q96M32 723 aa13.21□□□□□ -0.29
NUP54-211ENST00000512151 RRAGCQ9HB90 399 aa13.21□□□□□ -0.29
NUP54-211ENST00000512151 CD163L1Q9NR16 1453 aa13.21□□□□□ -0.29
NUP54-211ENST00000512151 PKD1L3Q7Z443 1732 aa13.2□□□□□ -0.3
NUP54-211ENST00000512151 C10orf71Q711Q0 1435 aa13.2□□□□□ -0.3
NUP54-211ENST00000512151 MMP10P09238 476 aa13.2□□□□□ -0.3
NUP54-211ENST00000512151 DPEP1P16444 411 aa13.19□□□□□ -0.3
NUP54-211ENST00000512151 BRCA1P38398 1863 aaKnown RBP13.18□□□□□ -0.3
NUP54-211ENST00000512151 PLEKHG2Q9H7P9 1386 aa13.18□□□□□ -0.3
NUP54-211ENST00000512151 FCHSD2O94868 740 aa13.18□□□□□ -0.3
NUP54-211ENST00000512151 TGFB2P61812 414 aa13.18□□□□□ -0.3
NUP54-211ENST00000512151 LINC00116Q8NCU8 138 aa13.18□□□□□ -0.3
NUP54-211ENST00000512151 SMC1BQ8NDV3 1235 aa13.18□□□□□ -0.3
NUP54-211ENST00000512151 RNF216Q9NWF9 866 aaPredicted RBP13.18□□□□□ -0.3
NUP54-211ENST00000512151 FBLN1P23142 703 aa13.17□□□□□ -0.3
NUP54-211ENST00000512151 SSFA2P28290 1259 aa13.17□□□□□ -0.3
NUP54-211ENST00000512151 MPRIPQ6WCQ1 1025 aa13.17□□□□□ -0.3
NUP54-211ENST00000512151 USHBP1Q8N6Y0 703 aa13.17□□□□□ -0.3
NUP54-211ENST00000512151 TNRC6CQ9HCJ0 1690 aaKnown RBP13.16□□□□□ -0.3
NUP54-211ENST00000512151 MAP2P11137 1827 aaKnown RBP13.16□□□□□ -0.3
NUP54-211ENST00000512151 KCNA3P22001 575 aa13.16□□□□□ -0.3
NUP54-211ENST00000512151 MAP3K19Q56UN5 1328 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 KDM2BQ8NHM5 1336 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 HOXC9P31274 260 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 NBPF6Q5VWK0 638 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 NBPF4Q96M43 638 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 RNF181Q9P0P0 153 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 PCDH10Q9P2E7 1040 aa13.15□□□□□ -0.3
NUP54-211ENST00000512151 ITGB4P16144 1822 aa13.14□□□□□ -0.31
NUP54-211ENST00000512151 ARFGEF1Q9Y6D6 1849 aa13.14□□□□□ -0.31
NUP54-211ENST00000512151 NSD3Q9BZ95 1437 aa13.14□□□□□ -0.31
NUP54-211ENST00000512151 SBF1O95248 1867 aa13.13□□□□□ -0.31
NUP54-211ENST00000512151 GNPATO15228 680 aa13.13□□□□□ -0.31
NUP54-211ENST00000512151 ITPK1Q13572 414 aa13.13□□□□□ -0.31
NUP54-211ENST00000512151 FAM161AQ3B820 660 aa13.13□□□□□ -0.31
NUP54-211ENST00000512151 PIGBQ92521 554 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms