RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 NUDT16Q96DE0 195 aaKnown RBP11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 COG3Q96JB2 828 aa11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 RRAGDQ9NQL2 400 aaPredicted RBP11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 CYP2E1P05181 493 aaPredicted RBP11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 TTC22Q5TAA0 569 aa11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 WAPLQ7Z5K2 1190 aa11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 OSBPL3Q9H4L5 887 aa11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 ADAMTS13Q76LX8 1427 aa11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 TTC21BQ7Z4L5 1316 aa11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 HDGFP51858 240 aaKnown RBP11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 NME9Q86XW9 330 aa11.47□□□□□ -0.57
PDGFRA-208ENST00000509490 SOS1Q07889 1333 aaPredicted RBP11.46□□□□□ -0.57
PDGFRA-208ENST00000509490 GSPT1P15170 499 aaKnown RBP11.46□□□□□ -0.57
PDGFRA-208ENST00000509490 GRPEL1Q9HAV7 217 aa11.46□□□□□ -0.57
PDGFRA-208ENST00000509490 CACNA1FO60840 1977 aa11.46□□□□□ -0.57
PDGFRA-208ENST00000509490 PTPRUQ92729 1446 aa11.46□□□□□ -0.57
PDGFRA-208ENST00000509490 KDRP35968 1356 aa11.46□□□□□ -0.57
PDGFRA-208ENST00000509490 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.46□□□□□ -0.58
PDGFRA-208ENST00000509490 USP6P35125 1406 aa11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 HSP90AB1P08238 724 aaKnown RBP11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 FAM208AQ9UK61 1670 aaKnown RBP11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 DIP2AQ14689 1571 aa11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 HMOX1P09601 288 aa11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 TMEM2Q9UHN6 1383 aa11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 PLEKHG1Q9ULL1 1385 aa11.45□□□□□ -0.58
PDGFRA-208ENST00000509490 PRR36Q9H6K5 1346 aa11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 PXDNLA1KZ92 1463 aa11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 USP26Q9BXU7 913 aa11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 XRN1Q8IZH2 1706 aaKnown RBP11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 EPB41L2O43491 1005 aaKnown RBP11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 CEP85Q6P2H3 762 aa11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 CWC22Q9HCG8 908 aaKnown RBP11.44□□□□□ -0.58
PDGFRA-208ENST00000509490 CD2BP2O95400 341 aaKnown RBP11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 KLHL40Q2TBA0 621 aa11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 THUMPD2Q9BTF0 503 aaKnown RBP11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 STAG3Q9UJ98 1225 aa11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 NUCB2P80303 420 aa11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 EIF4A2Q14240 407 aaKnown RBP11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 PPP1R9BQ96SB3 815 aa11.43□□□□□ -0.58
PDGFRA-208ENST00000509490 TTC21AQ8NDW8 1320 aa11.42□□□□□ -0.58
PDGFRA-208ENST00000509490 HTATSF1O43719 755 aaKnown RBP11.42□□□□□ -0.58
PDGFRA-208ENST00000509490 ZNF445P59923 1031 aa11.42□□□□□ -0.58
PDGFRA-208ENST00000509490 SLIT1O75093 1534 aa11.42□□□□□ -0.58
PDGFRA-208ENST00000509490 ROBO2Q9HCK4 1378 aa11.42□□□□□ -0.58
PDGFRA-208ENST00000509490 SALL3Q9BXA9 1300 aa11.42□□□□□ -0.58
PDGFRA-208ENST00000509490 ARHGAP23Q9P227 1491 aa11.41□□□□□ -0.58
PDGFRA-208ENST00000509490 TNRQ92752 1358 aa11.41□□□□□ -0.58
PDGFRA-208ENST00000509490 MARF1Q9Y4F3 1742 aaKnown RBP11.41□□□□□ -0.58
PDGFRA-208ENST00000509490 GAS2L2Q8NHY3 880 aa11.41□□□□□ -0.58
PDGFRA-208ENST00000509490 BABAM1Q9NWV8 329 aa11.41□□□□□ -0.58
PDGFRA-208ENST00000509490 C1orf115Q9H7X2 142 aa11.41□□□□□ -0.58
PDGFRA-208ENST00000509490 HOMEZQ8IX15 550 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 PANK2Q9BZ23 570 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 MSH6P52701 1360 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 GOLGA6L22H0YM25 854 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 FBLN1P23142 703 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 SPRYD3Q8NCJ5 442 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 ZRANB1Q9UGI0 708 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 SBNO1A3KN83 1393 aa11.4□□□□□ -0.58
PDGFRA-208ENST00000509490 BAG4O95429 457 aaKnown RBP11.4□□□□□ -0.59
PDGFRA-208ENST00000509490 KIF13AQ9H1H9 1805 aa11.4□□□□□ -0.59
PDGFRA-208ENST00000509490 CCT4P50991 539 aaKnown RBP11.39□□□□□ -0.59
PDGFRA-208ENST00000509490 HS1BP3Q53T59 392 aa11.39□□□□□ -0.59
PDGFRA-208ENST00000509490 CRYBG1Q9Y4K1 1723 aa11.39□□□□□ -0.59
PDGFRA-208ENST00000509490 NWD1Q149M9 1564 aa11.39□□□□□ -0.59
PDGFRA-208ENST00000509490 AOX1Q06278 1338 aa11.39□□□□□ -0.59
PDGFRA-208ENST00000509490 PIK3C2AO00443 1686 aa11.39□□□□□ -0.59
PDGFRA-208ENST00000509490 HMMRO75330 724 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 REC8O95072 547 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 CCDC173Q0VFZ6 552 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 CASC1Q6TDU7 716 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 GAS2L3Q86XJ1 694 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 ANKARQ7Z5J8 1434 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 TSPOAP1O95153 1857 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 FAM83GA6ND36 823 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 IGSF1Q8N6C5 1336 aa11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 MED1Q15648 1581 aaPredicted RBP11.38□□□□□ -0.59
PDGFRA-208ENST00000509490 SDSP20132 328 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 MCM2P49736 904 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 RRS1Q15050 365 aaKnown RBP11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 FLT4P35916 1363 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 SSFA2P28290 1259 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 ANAPC15P60006 121 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 TXNDC2Q86VQ3 553 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 ESPNB1AK53 854 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 FAM69CQ0P6D2 419 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 STAP2Q9UGK3 403 aa11.37□□□□□ -0.59
PDGFRA-208ENST00000509490 PHRF1Q9P1Y6 1649 aaKnown RBP11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 SULT6B1Q6IMI4 303 aa11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 RBM42Q9BTD8 480 aaKnown RBP11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 GZF1Q9H116 711 aaPredicted RBP11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 ACEP12821 1306 aa11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 ERC2O15083 957 aa11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 ST18O60284 1047 aa11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 AEBP1Q8IUX7 1158 aa11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 LMBRD1Q9NUN5 540 aa11.36□□□□□ -0.59
PDGFRA-208ENST00000509490 CUL4AQ13619 759 aa11.35□□□□□ -0.59
PDGFRA-208ENST00000509490 TERF1P54274 439 aa11.35□□□□□ -0.59
PDGFRA-208ENST00000509490 LMTK3Q96Q04 1460 aa11.35□□□□□ -0.59
PDGFRA-208ENST00000509490 ELL2O00472 640 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms