RNA–Protein interactions for RNA: ENST00000509333.5

PDLIM5-212, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-212ENST00000509333 SBF2Q86WG5 1849 aa21.99■■□□□ 1.11
PDLIM5-212ENST00000509333 FAM208AQ9UK61 1670 aaKnown RBP21.99■■□□□ 1.11
PDLIM5-212ENST00000509333 MEGF6O75095 1541 aa21.99■■□□□ 1.11
PDLIM5-212ENST00000509333 KAT6BQ8WYB5 2073 aa21.97■■□□□ 1.11
PDLIM5-212ENST00000509333 PSDA5PKW4 1024 aaPredicted RBP21.97■■□□□ 1.11
PDLIM5-212ENST00000509333 PRIM1P49642 420 aaKnown RBP21.97■■□□□ 1.11
PDLIM5-212ENST00000509333 MTHFSP49914 203 aa21.97■■□□□ 1.11
PDLIM5-212ENST00000509333 NPC1L1Q9UHC9 1359 aa21.96■■□□□ 1.11
PDLIM5-212ENST00000509333 ANKRD26Q9UPS8 1709 aa21.95■■□□□ 1.1
PDLIM5-212ENST00000509333 CYP27B1O15528 508 aa21.95■■□□□ 1.1
PDLIM5-212ENST00000509333 R3HDM1Q15032 1099 aaKnown RBP21.95■■□□□ 1.1
PDLIM5-212ENST00000509333 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.95■■□□□ 1.12e-6■■■□□ 15.2
PDLIM5-212ENST00000509333 NCAPD2Q15021 1401 aa21.95■■□□□ 1.1
PDLIM5-212ENST00000509333 IL13P35225 146 aa21.94■■□□□ 1.1
PDLIM5-212ENST00000509333 TXNRD1Q16881 649 aa21.94■■□□□ 1.1
PDLIM5-212ENST00000509333 NBPF14Q5TI25 921 aa21.94■■□□□ 1.1
PDLIM5-212ENST00000509333 IGSF1Q8N6C5 1336 aa21.92■■□□□ 1.1
PDLIM5-212ENST00000509333 CNGB1Q14028 1251 aaPredicted RBP21.92■■□□□ 1.1
PDLIM5-212ENST00000509333 SPG7Q9UQ90 795 aa21.92■■□□□ 1.1
PDLIM5-212ENST00000509333 NKX1-1Q15270 411 aaPredicted RBP21.91■■□□□ 1.1
PDLIM5-212ENST00000509333 PCDH11XQ9BZA7 1347 aa21.89■■□□□ 1.1
PDLIM5-212ENST00000509333 PCDH11YQ9BZA8 1340 aa21.89■■□□□ 1.1
PDLIM5-212ENST00000509333 SYTL4Q96C24 671 aaPredicted RBP21.89■■□□□ 1.09
PDLIM5-212ENST00000509333 AEBP1Q8IUX7 1158 aa21.87■■□□□ 1.09
PDLIM5-212ENST00000509333 SRCAPQ6ZRS2 3230 aa21.87■■□□□ 1.09
PDLIM5-212ENST00000509333 SULT6B1Q6IMI4 303 aa21.86■■□□□ 1.09
PDLIM5-212ENST00000509333 IFNL2Q8IZJ0 200 aa21.85■■□□□ 1.09
PDLIM5-212ENST00000509333 LRRC4BQ9NT99 713 aa21.85■■□□□ 1.09
PDLIM5-212ENST00000509333 PHKG2P15735 406 aa21.84■■□□□ 1.09
PDLIM5-212ENST00000509333 PLEKHO1Q53GL0 409 aaPredicted RBP21.84■■□□□ 1.09
PDLIM5-212ENST00000509333 ANO8Q9HCE9 1232 aaPredicted RBP21.84■■□□□ 1.09
PDLIM5-212ENST00000509333 SHANK3Q9BYB0 1731 aa21.83■■□□□ 1.09
PDLIM5-212ENST00000509333 NHSQ6T4R5 1651 aa21.83■■□□□ 1.09
PDLIM5-212ENST00000509333 DIAPH1O60610 1272 aaKnown RBP21.83■■□□□ 1.09
PDLIM5-212ENST00000509333 AMOTQ4VCS5 1084 aa21.82■■□□□ 1.08
PDLIM5-212ENST00000509333 MPRIPQ6WCQ1 1025 aa21.82■■□□□ 1.08
PDLIM5-212ENST00000509333 RREB1Q92766 1687 aa21.82■■□□□ 1.08
PDLIM5-212ENST00000509333 SLC15A2Q16348 729 aa21.81■■□□□ 1.08
PDLIM5-212ENST00000509333 SLC27A3Q5K4L6 730 aa21.81■■□□□ 1.08
PDLIM5-212ENST00000509333 PLEKHG2Q9H7P9 1386 aa21.8■■□□□ 1.08
PDLIM5-212ENST00000509333 PIGBQ92521 554 aa21.8■■□□□ 1.08
PDLIM5-212ENST00000509333 KDRP35968 1356 aa21.79■■□□□ 1.08
PDLIM5-212ENST00000509333 PPP2R1AP30153 589 aa21.79■■□□□ 1.08
PDLIM5-212ENST00000509333 KCNQ4P56696 695 aa21.79■■□□□ 1.08
PDLIM5-212ENST00000509333 STK32BQ9NY57 414 aa21.79■■□□□ 1.08
PDLIM5-212ENST00000509333 BTAF1O14981 1849 aa21.78■■□□□ 1.08
PDLIM5-212ENST00000509333 NUP188Q5SRE5 1749 aa21.78■■□□□ 1.08
PDLIM5-212ENST00000509333 ZEB1P37275 1124 aaPredicted RBP21.78■■□□□ 1.08
PDLIM5-212ENST00000509333 PDGFDQ9GZP0 370 aaPredicted RBP21.78■■□□□ 1.08
PDLIM5-212ENST00000509333 RGPD3A6NKT7 1758 aaPredicted RBP21.78■■□□□ 1.08
PDLIM5-212ENST00000509333 RGPD4Q7Z3J3 1758 aa21.78■■□□□ 1.08
PDLIM5-212ENST00000509333 HMOX1P09601 288 aa21.77■■□□□ 1.08
PDLIM5-212ENST00000509333 DDX10Q13206 875 aaKnown RBP21.76■■□□□ 1.07
PDLIM5-212ENST00000509333 ZNF530Q6P9A1 599 aaPredicted RBP21.76■■□□□ 1.07
PDLIM5-212ENST00000509333 ERVV-2B6SEH9 535 aa21.75■■□□□ 1.07
PDLIM5-212ENST00000509333 HSP90AB1P08238 724 aaKnown RBP21.75■■□□□ 1.07
PDLIM5-212ENST00000509333 AKT1S1Q96B36 256 aa21.75■■□□□ 1.07
PDLIM5-212ENST00000509333 DCAF5Q96JK2 942 aa21.75■■□□□ 1.07
PDLIM5-212ENST00000509333 PKD1L3Q7Z443 1732 aa21.75■■□□□ 1.07
PDLIM5-212ENST00000509333 SMARCC1Q92922 1105 aaPredicted RBP21.74■■□□□ 1.07
PDLIM5-212ENST00000509333 ZNF827Q17R98 1081 aa21.73■■□□□ 1.07
PDLIM5-212ENST00000509333 CCNL1Q9UK58 526 aaPredicted RBP21.73■■□□□ 1.07
PDLIM5-212ENST00000509333 TMOD3Q9NYL9 352 aa21.72■■□□□ 1.07
PDLIM5-212ENST00000509333 U2SURPO15042 1029 aaKnown RBP21.71■■□□□ 1.07
PDLIM5-212ENST00000509333 CFAP53Q96M91 514 aa21.71■■□□□ 1.07
PDLIM5-212ENST00000509333 ASAP1Q9ULH1 1129 aa21.71■■□□□ 1.07
PDLIM5-212ENST00000509333 DOT1LQ8TEK3 1739 aa21.7■■□□□ 1.06
PDLIM5-212ENST00000509333 MTHFSDQ2M296 383 aaKnown RBP21.7■■□□□ 1.06
PDLIM5-212ENST00000509333 C1orf141Q5JVX7 400 aa21.7■■□□□ 1.06
PDLIM5-212ENST00000509333 SPON1Q9HCB6 807 aa21.7■■□□□ 1.06
PDLIM5-212ENST00000509333 ATG3Q9NT62 314 aa21.7■■□□□ 1.06
PDLIM5-212ENST00000509333 AKAP4Q5JQC9 854 aa21.69■■□□□ 1.06
PDLIM5-212ENST00000509333 COL3A1P02461 1466 aaPredicted RBP21.69■■□□□ 1.06
PDLIM5-212ENST00000509333 CABP4P57796 275 aa21.68■■□□□ 1.06
PDLIM5-212ENST00000509333 LGR6Q9HBX8 967 aa21.68■■□□□ 1.06
PDLIM5-212ENST00000509333 PALLDQ8WX93 1383 aa21.68■■□□□ 1.06
PDLIM5-212ENST00000509333 NFATC2IPQ8NCF5 419 aa21.67■■□□□ 1.06
PDLIM5-212ENST00000509333 NUDCQ9Y266 331 aa21.67■■□□□ 1.06
PDLIM5-212ENST00000509333 ZBTB7AO95365 584 aa21.66■■□□□ 1.06
PDLIM5-212ENST00000509333 HMGB2P26583 209 aaKnown RBP21.66■■□□□ 1.06
PDLIM5-212ENST00000509333 ATF5Q9Y2D1 282 aaPredicted RBP21.66■■□□□ 1.06
PDLIM5-212ENST00000509333 ITGB4P16144 1822 aa21.66■■□□□ 1.06
PDLIM5-212ENST00000509333 LOC102724428A0A0B4J2F2 783 aa21.65■■□□□ 1.06
PDLIM5-212ENST00000509333 SIK1P57059 783 aa21.65■■□□□ 1.06
PDLIM5-212ENST00000509333 TFCP2L1Q9NZI6 479 aa21.65■■□□□ 1.06
PDLIM5-212ENST00000509333 KDM6AO15550 1401 aaPredicted RBP21.64■■□□□ 1.06
PDLIM5-212ENST00000509333 TOGARAM1Q9Y4F4 1720 aa21.64■■□□□ 1.06
PDLIM5-212ENST00000509333 PHACTR3Q96KR7 559 aa21.64■■□□□ 1.05
PDLIM5-212ENST00000509333 LY75O60449 1722 aa21.63■■□□□ 1.05
PDLIM5-212ENST00000509333 RNMTO43148 476 aaKnown RBP21.63■■□□□ 1.05
PDLIM5-212ENST00000509333 RALBP1Q15311 655 aa21.63■■□□□ 1.05
PDLIM5-212ENST00000509333 RSPH6AQ9H0K4 717 aa21.63■■□□□ 1.05
PDLIM5-212ENST00000509333 PNPLA7Q6ZV29 1317 aa21.62■■□□□ 1.05
PDLIM5-212ENST00000509333 FCHSD2O94868 740 aa21.62■■□□□ 1.05
PDLIM5-212ENST00000509333 U2AF1L5P0DN76 240 aaPredicted RBP21.62■■□□□ 1.05
PDLIM5-212ENST00000509333 PTGER2P43116 358 aa21.62■■□□□ 1.05
PDLIM5-212ENST00000509333 U2AF1Q01081 240 aaKnown RBP eCLIP21.62■■□□□ 1.051e-7■■■■■ 28.2
PDLIM5-212ENST00000509333 SLC4A9Q96Q91 983 aa21.62■■□□□ 1.05
PDLIM5-212ENST00000509333 MTFR1LQ9H019 292 aa21.62■■□□□ 1.05
PDLIM5-212ENST00000509333 PAPPAQ13219 1627 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms