RNA–Protein interactions for RNA: ENST00000509101.1

CXCL1-202, Transcript of C-X-C motif chemokine ligand 1, humanhuman

TSL 3

Gene CXCL1, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-202ENST00000509101 POLD1P28340 1107 aa22.66■■□□□ 1.22
CXCL1-202ENST00000509101 MEGF6O75095 1541 aa22.66■■□□□ 1.22
CXCL1-202ENST00000509101 PELP1Q8IZL8 1130 aaKnown RBP22.65■■□□□ 1.22
CXCL1-202ENST00000509101 TFCP2L1Q9NZI6 479 aa22.65■■□□□ 1.22
CXCL1-202ENST00000509101 PRIM1P49642 420 aaKnown RBP22.64■■□□□ 1.21
CXCL1-202ENST00000509101 C1QTNF8P60827 252 aa22.64■■□□□ 1.21
CXCL1-202ENST00000509101 MAP3K19Q56UN5 1328 aa22.63■■□□□ 1.21
CXCL1-202ENST00000509101 C5P01031 1676 aa22.63■■□□□ 1.21
CXCL1-202ENST00000509101 HOXC9P31274 260 aa22.62■■□□□ 1.21
CXCL1-202ENST00000509101 COG3Q96JB2 828 aa22.62■■□□□ 1.21
CXCL1-202ENST00000509101 NLGN2Q8NFZ4 835 aa22.61■■□□□ 1.21
CXCL1-202ENST00000509101 TONSLQ96HA7 1378 aa22.61■■□□□ 1.21
CXCL1-202ENST00000509101 FBLN1P23142 703 aa22.6■■□□□ 1.21
CXCL1-202ENST00000509101 AMPHP49418 695 aa22.6■■□□□ 1.21
CXCL1-202ENST00000509101 PUS7Q96PZ0 661 aaKnown RBP22.6■■□□□ 1.21
CXCL1-202ENST00000509101 ZCRB1Q8TBF4 217 aaKnown RBP22.59■■□□□ 1.21
CXCL1-202ENST00000509101 TAF1LQ8IZX4 1826 aa22.59■■□□□ 1.21
CXCL1-202ENST00000509101 KIF20BQ96Q89 1820 aa22.59■■□□□ 1.21
CXCL1-202ENST00000509101 CCNL1Q9UK58 526 aaPredicted RBP22.58■■□□□ 1.21
CXCL1-202ENST00000509101 RTL1A6NKG5 1358 aa22.58■■□□□ 1.21
CXCL1-202ENST00000509101 USP47Q96K76 1375 aa22.56■■□□□ 1.2
CXCL1-202ENST00000509101 MSH5O43196 834 aa22.56■■□□□ 1.2
CXCL1-202ENST00000509101 GIGYF1O75420 1035 aaPredicted RBP22.56■■□□□ 1.2
CXCL1-202ENST00000509101 TESK2Q96S53 571 aa22.55■■□□□ 1.2
CXCL1-202ENST00000509101 USHBP1Q8N6Y0 703 aa22.54■■□□□ 1.2
CXCL1-202ENST00000509101 TOGARAM1Q9Y4F4 1720 aa22.54■■□□□ 1.2
CXCL1-202ENST00000509101 ITGB4P16144 1822 aa22.53■■□□□ 1.2
CXCL1-202ENST00000509101 RRS1Q15050 365 aaKnown RBP22.53■■□□□ 1.2
CXCL1-202ENST00000509101 SMG6Q86US8 1419 aaKnown RBP22.53■■□□□ 1.2
CXCL1-202ENST00000509101 ST20-MTHFSA0A0A6YYL1 179 aa22.52■■□□□ 1.2
CXCL1-202ENST00000509101 NBPF6Q5VWK0 638 aa22.52■■□□□ 1.2
CXCL1-202ENST00000509101 MSL1Q68DK7 614 aa22.52■■□□□ 1.2
CXCL1-202ENST00000509101 COL23A1Q86Y22 540 aaPredicted RBP22.52■■□□□ 1.2
CXCL1-202ENST00000509101 NBPF4Q96M43 638 aa22.52■■□□□ 1.2
CXCL1-202ENST00000509101 YBX3P16989 372 aaKnown RBP eCLIP22.51■■□□□ 1.19
CXCL1-202ENST00000509101 C4BP0C0L5 1744 aa22.49■■□□□ 1.19
CXCL1-202ENST00000509101 RAPGEF4Q8WZA2 1011 aa22.49■■□□□ 1.19
CXCL1-202ENST00000509101 CGNL1Q0VF96 1302 aa22.49■■□□□ 1.19
CXCL1-202ENST00000509101 PKD1L3Q7Z443 1732 aa22.48■■□□□ 1.19
CXCL1-202ENST00000509101 GGNBP2Q9H3C7 697 aa22.48■■□□□ 1.19
CXCL1-202ENST00000509101 GRIN3BO60391 1043 aa22.47■■□□□ 1.19
CXCL1-202ENST00000509101 UBR3Q6ZT12 1888 aa22.47■■□□□ 1.19
CXCL1-202ENST00000509101 TATP17735 454 aaPredicted RBP22.46■■□□□ 1.19
CXCL1-202ENST00000509101 PCDH11XQ9BZA7 1347 aa22.46■■□□□ 1.19
CXCL1-202ENST00000509101 PCDH11YQ9BZA8 1340 aa22.46■■□□□ 1.19
CXCL1-202ENST00000509101 PALLDQ8WX93 1383 aa22.46■■□□□ 1.19
CXCL1-202ENST00000509101 CEP350Q5VT06 3117 aa22.45■■□□□ 1.18
CXCL1-202ENST00000509101 FYB1O15117 783 aa22.45■■□□□ 1.18
CXCL1-202ENST00000509101 INSRP06213 1382 aa22.44■■□□□ 1.18
CXCL1-202ENST00000509101 ATP10DQ9P241 1426 aa22.44■■□□□ 1.18
CXCL1-202ENST00000509101 FLT4P35916 1363 aa22.43■■□□□ 1.18
CXCL1-202ENST00000509101 SLC24A1O60721 1099 aa22.42■■□□□ 1.18
CXCL1-202ENST00000509101 HSP90AB2PQ58FF8 381 aa22.42■■□□□ 1.18
CXCL1-202ENST00000509101 ANKRD26Q9UPS8 1709 aa22.41■■□□□ 1.18
CXCL1-202ENST00000509101 MPRIPQ6WCQ1 1025 aa22.41■■□□□ 1.18
CXCL1-202ENST00000509101 MAP2P11137 1827 aaKnown RBP22.41■■□□□ 1.18
CXCL1-202ENST00000509101 TMF1P82094 1093 aa22.39■■□□□ 1.17
CXCL1-202ENST00000509101 FLAD1Q8NFF5 587 aa22.39■■□□□ 1.17
CXCL1-202ENST00000509101 CD2APQ9Y5K6 639 aa22.39■■□□□ 1.17
CXCL1-202ENST00000509101 CYP27B1O15528 508 aa22.38■■□□□ 1.17
CXCL1-202ENST00000509101 AK7Q96M32 723 aa22.38■■□□□ 1.17
CXCL1-202ENST00000509101 KIF24Q5T7B8 1368 aa22.38■■□□□ 1.17
CXCL1-202ENST00000509101 PHF14O94880 888 aa22.36■■□□□ 1.17
CXCL1-202ENST00000509101 AMIGO3Q86WK7 504 aa22.36■■□□□ 1.17
CXCL1-202ENST00000509101 ADCY9O60503 1353 aa22.36■■□□□ 1.17
CXCL1-202ENST00000509101 HMGB2P26583 209 aaKnown RBP22.35■■□□□ 1.17
CXCL1-202ENST00000509101 SMARCC1Q92922 1105 aaPredicted RBP22.35■■□□□ 1.17
CXCL1-202ENST00000509101 EMILIN1Q9Y6C2 1016 aa22.35■■□□□ 1.17
CXCL1-202ENST00000509101 NCAPD2Q15021 1401 aa22.34■■□□□ 1.17
CXCL1-202ENST00000509101 NSD3Q9BZ95 1437 aa22.34■■□□□ 1.17
CXCL1-202ENST00000509101 SMIM5Q71RC9 77 aa22.34■■□□□ 1.17
CXCL1-202ENST00000509101 GPBP1L1Q9HC44 474 aaPredicted RBP22.33■■□□□ 1.17
CXCL1-202ENST00000509101 WWC3Q9ULE0 1092 aa22.33■■□□□ 1.17
CXCL1-202ENST00000509101 IGSF1Q8N6C5 1336 aa22.32■■□□□ 1.16
CXCL1-202ENST00000509101 ZNF526Q8TF50 670 aaPredicted RBP22.32■■□□□ 1.16
CXCL1-202ENST00000509101 PIGBQ92521 554 aa22.32■■□□□ 1.16
CXCL1-202ENST00000509101 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.31■■□□□ 1.16
CXCL1-202ENST00000509101 LINC00116Q8NCU8 138 aa22.29■■□□□ 1.16
CXCL1-202ENST00000509101 KIF13BQ9NQT8 1826 aa22.29■■□□□ 1.16
CXCL1-202ENST00000509101 PPM1GO15355 546 aaPredicted RBP22.28■■□□□ 1.16
CXCL1-202ENST00000509101 CDCA8Q53HL2 280 aa22.28■■□□□ 1.16
CXCL1-202ENST00000509101 CARD14Q9BXL6 1004 aa22.28■■□□□ 1.16
CXCL1-202ENST00000509101 KIAA1551Q9HCM1 1747 aa22.28■■□□□ 1.16
CXCL1-202ENST00000509101 CICQ96RK0 1608 aaPredicted RBP22.28■■□□□ 1.16
CXCL1-202ENST00000509101 N4BP2Q86UW6 1770 aaPredicted RBP22.27■■□□□ 1.16
CXCL1-202ENST00000509101 LOC102724428A0A0B4J2F2 783 aa22.27■■□□□ 1.16
CXCL1-202ENST00000509101 SSFA2P28290 1259 aa22.27■■□□□ 1.16
CXCL1-202ENST00000509101 SIK1P57059 783 aa22.27■■□□□ 1.16
CXCL1-202ENST00000509101 NKX1-1Q15270 411 aaPredicted RBP22.27■■□□□ 1.16
CXCL1-202ENST00000509101 IFFO2Q5TF58 517 aa22.27■■□□□ 1.16
CXCL1-202ENST00000509101 SPG7Q9UQ90 795 aa22.27■■□□□ 1.16
CXCL1-202ENST00000509101 TMOD3Q9NYL9 352 aa22.25■■□□□ 1.15
CXCL1-202ENST00000509101 GNPATO15228 680 aa22.24■■□□□ 1.15
CXCL1-202ENST00000509101 COL5A3P25940 1745 aaPredicted RBP22.23■■□□□ 1.15
CXCL1-202ENST00000509101 ITPK1Q13572 414 aa22.23■■□□□ 1.15
CXCL1-202ENST00000509101 ASAP1Q9ULH1 1129 aa22.23■■□□□ 1.15
CXCL1-202ENST00000509101 HSPA6P17066 643 aa22.22■■□□□ 1.15
CXCL1-202ENST00000509101 EYA1Q99502 592 aa22.22■■□□□ 1.15
CXCL1-202ENST00000509101 WASHC2AQ641Q2 1341 aa22.22■■□□□ 1.15
CXCL1-202ENST00000509101 ZNF831Q5JPB2 1677 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms