RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DNAI2Q9GZS0 605 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 ARFGAP3Q9NP61 516 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 USP47Q96K76 1375 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 CCDC150Q8NCX0 1101 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 TTC14Q96N46 770 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 EBAG9O00559 213 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 TOP1P11387 765 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 GBP6Q6ZN66 633 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 HOOK3Q86VS8 718 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 A0A1B0GUL7 405 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 ELL2O00472 640 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 PPP1R12BO60237 982 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 WASHC4Q2M389 1173 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 ALS2CR12Q96Q35 445 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 TANGO6Q9C0B7 1094 aa13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 DDX19AQ9NUU7 478 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-208ENST00000508501 DNAJC21Q5F1R6 531 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 ANKS4BQ8N8V4 417 aa13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 NGDNQ8NEJ9 315 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 CARMIL1Q5VZK9 1371 aa13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 FKBP15Q5T1M5 1219 aa13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 PAF1Q8N7H5 531 aa13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 CCDC94Q9BW85 323 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 NOL3O60936 208 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 CCDC50Q8IVM0 306 aa13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 ZNF428Q96B54 188 aa13.09□□□□□ -0.31
LIMCH1-208ENST00000508501 MIA2Q96PC5 1412 aa13.08□□□□□ -0.31
LIMCH1-208ENST00000508501 USH1CQ9Y6N9 552 aa13.08□□□□□ -0.31
LIMCH1-208ENST00000508501 FSD2A1L4K1 749 aa13.08□□□□□ -0.32
LIMCH1-208ENST00000508501 EFCAB2Q5VUJ9 269 aa13.08□□□□□ -0.32
LIMCH1-208ENST00000508501 HSF2BPO75031 334 aa13.08□□□□□ -0.32
LIMCH1-208ENST00000508501 YEATS4O95619 227 aa13.08□□□□□ -0.32
LIMCH1-208ENST00000508501 LIG1P18858 919 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 MSL1Q68DK7 614 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 CLIP2Q9UDT6 1046 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 CTNNA3Q9UI47 895 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 GSTTP1A0A1W2PQM5 241 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC113Q9H0I3 377 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 PHAXQ9H814 394 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC144AA2RUR9 1427 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC155Q8N6L0 562 aa13.07□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC7Q96M83 1385 aa13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 KIF4AO95239 1232 aa13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 SNW1Q13573 536 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 BLOC1S2Q6QNY1 142 aa13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 RNF168Q8IYW5 571 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 NAP1L3Q99457 506 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 LUC7L2Q9Y383 392 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 SYCE3A1L190 88 aa13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 TRIM21P19474 475 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 FOSBP53539 338 aa13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 XPCQ01831 940 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 IFI16Q16666 785 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 SH2B1Q9NRF2 756 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-208ENST00000508501 GOLIM4O00461 696 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC121Q6ZUS5 278 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 OTUD6BQ8N6M0 293 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC110Q8TBZ0 833 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 SREK1Q8WXA9 508 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 PYM1Q9BRP8 204 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 DHX29Q7Z478 1369 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 PPFIBP2Q8ND30 876 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 DDX23Q9BUQ8 820 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 STIM2Q9P246 746 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 FERP16591 822 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 OGFRQ9NZT2 677 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 ZSCAN25Q6NSZ9 544 aa13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 BCCIPQ9P287 314 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIMCH1-208ENST00000508501 TACC1O75410 805 aa13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 AIMP1Q12904 312 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 TRERF1Q96PN7 1200 aa13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 NACAP1Q9BZK3 213 aa13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 RB1CC1Q8TDY2 1594 aa13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 CEP135Q66GS9 1140 aa13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 POTEDQ86YR6 584 aa13.04□□□□□ -0.32
LIMCH1-208ENST00000508501 TERF1P54274 439 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 PANK1Q8TE04 598 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 SMG6Q86US8 1419 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 GABPB1Q06547 395 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 LMNTD2Q8IXW0 634 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 NBPF11Q86T75 865 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 FMNL3Q8IVF7 1028 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 MICALL1Q8N3F8 863 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 MIPOL1Q8TD10 442 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 ANAPC15P60006 121 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 B4GALNT4Q76KP1 1039 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 RSPH14Q9UHP6 348 aa13.03□□□□□ -0.32
LIMCH1-208ENST00000508501 CARMIL2Q6F5E8 1435 aa13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 GNAI2P04899 355 aa13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 SH2D4BQ5SQS7 431 aa13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 SMC6Q96SB8 1091 aa13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 CCDC77Q9BR77 488 aa13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 PLVAPQ9BX97 442 aa13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 VGFO15240 615 aaPredicted RBP13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 SURF6O75683 361 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 RBM25P49756 843 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-208ENST00000508501 RAD21O60216 631 aa13.02□□□□□ -0.33
LIMCH1-208ENST00000508501 CCT4P50991 539 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms