RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 ZCRB1Q8TBF4 217 aaKnown RBP16.09■□□□□ 0.17
HMGCS1-204ENST00000507293 NBPF4Q96M43 638 aa16.09■□□□□ 0.17
HMGCS1-204ENST00000507293 ZNF827Q17R98 1081 aa16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 SYTL4Q96C24 671 aaPredicted RBP16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 MTFR1LQ9H019 292 aa16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 LRRC4BQ9NT99 713 aa16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 TIMELESSQ9UNS1 1208 aa16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 NSD2O96028 1365 aa16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 FLT4P35916 1363 aa16.08■□□□□ 0.16
HMGCS1-204ENST00000507293 PRIM1P49642 420 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-204ENST00000507293 CARD14Q9BXL6 1004 aa16.07■□□□□ 0.16
HMGCS1-204ENST00000507293 PCGF6Q9BYE7 350 aa16.07■□□□□ 0.16
HMGCS1-204ENST00000507293 INSRP06213 1382 aa16.07■□□□□ 0.16
HMGCS1-204ENST00000507293 MAP2P11137 1827 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-204ENST00000507293 KIF24Q5T7B8 1368 aa16.06■□□□□ 0.16
HMGCS1-204ENST00000507293 CLSPNQ9HAW4 1339 aa16.06■□□□□ 0.16
HMGCS1-204ENST00000507293 DCAF8L1A6NGE4 600 aa16.06■□□□□ 0.16
HMGCS1-204ENST00000507293 HSP90AB2PQ58FF8 381 aa16.06■□□□□ 0.16
HMGCS1-204ENST00000507293 COL24A1Q17RW2 1714 aa16.05■□□□□ 0.16
HMGCS1-204ENST00000507293 PKD1L3Q7Z443 1732 aa16.05■□□□□ 0.16
HMGCS1-204ENST00000507293 SLC27A3Q5K4L6 730 aa16.05■□□□□ 0.16
HMGCS1-204ENST00000507293 RAPGEF4Q8WZA2 1011 aa16.05■□□□□ 0.16
HMGCS1-204ENST00000507293 SGIP1Q9BQI5 828 aa16.05■□□□□ 0.16
HMGCS1-204ENST00000507293 TOGARAM1Q9Y4F4 1720 aa16.05■□□□□ 0.16
HMGCS1-204ENST00000507293 CGNL1Q0VF96 1302 aa16.04■□□□□ 0.16
HMGCS1-204ENST00000507293 ITGB4P16144 1822 aa16.04■□□□□ 0.16
HMGCS1-204ENST00000507293 YY1P25490 414 aa16.04■□□□□ 0.16
HMGCS1-204ENST00000507293 AKT1S1Q96B36 256 aa16.04■□□□□ 0.16
HMGCS1-204ENST00000507293 C5P01031 1676 aa16.03■□□□□ 0.16
HMGCS1-204ENST00000507293 TATP17735 454 aaPredicted RBP16.03■□□□□ 0.16
HMGCS1-204ENST00000507293 KCNQ4P56696 695 aa16.03■□□□□ 0.16
HMGCS1-204ENST00000507293 FHDC1Q9C0D6 1143 aaPredicted RBP16.03■□□□□ 0.16
HMGCS1-204ENST00000507293 EMILIN1Q9Y6C2 1016 aa16.03■□□□□ 0.16
HMGCS1-204ENST00000507293 TAF1LQ8IZX4 1826 aa16.01■□□□□ 0.15
HMGCS1-204ENST00000507293 PCDH11XQ9BZA7 1347 aa16.01■□□□□ 0.15
HMGCS1-204ENST00000507293 PCDH11YQ9BZA8 1340 aa16.01■□□□□ 0.15
HMGCS1-204ENST00000507293 PNPLA7Q6ZV29 1317 aa16■□□□□ 0.15
HMGCS1-204ENST00000507293 ARXQ96QS3 562 aa16■□□□□ 0.15
HMGCS1-204ENST00000507293 SYT17Q9BSW7 474 aa16■□□□□ 0.15
HMGCS1-204ENST00000507293 POLR3GLQ9BT43 218 aa16■□□□□ 0.15
HMGCS1-204ENST00000507293 CCNL1Q9UK58 526 aaPredicted RBP16■□□□□ 0.15
HMGCS1-204ENST00000507293 NCAPD2Q15021 1401 aa16■□□□□ 0.15
HMGCS1-204ENST00000507293 PPM1GO15355 546 aaPredicted RBP15.99■□□□□ 0.15
HMGCS1-204ENST00000507293 TFCP2L1Q9NZI6 479 aa15.99■□□□□ 0.15
HMGCS1-204ENST00000507293 CHD4Q14839 1912 aa15.98■□□□□ 0.15
HMGCS1-204ENST00000507293 SLC16A10Q8TF71 515 aa15.97■□□□□ 0.15
HMGCS1-204ENST00000507293 MAP3K5Q99683 1374 aa15.97■□□□□ 0.15
HMGCS1-204ENST00000507293 CYP27B1O15528 508 aa15.96■□□□□ 0.15
HMGCS1-204ENST00000507293 WASHC2AQ641Q2 1341 aa15.95■□□□□ 0.14
HMGCS1-204ENST00000507293 PALLDQ8WX93 1383 aa15.95■□□□□ 0.14
HMGCS1-204ENST00000507293 HSPA5P11021 654 aaKnown RBP15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 POLD1P28340 1107 aa15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 EIF4G2P78344 907 aaKnown RBP eCLIP15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 MPRIPQ6WCQ1 1025 aa15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 KLHL34Q8N239 644 aa15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 POLKQ9UBT6 870 aa15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 C4BP0C0L5 1744 aa15.94■□□□□ 0.14
HMGCS1-204ENST00000507293 EYA1Q99502 592 aa15.93■□□□□ 0.14
HMGCS1-204ENST00000507293 MSH5O43196 834 aa15.92■□□□□ 0.14
HMGCS1-204ENST00000507293 TNNT2P45379 298 aaPredicted RBP15.92■□□□□ 0.14
HMGCS1-204ENST00000507293 CCER1Q8TC90 406 aaPredicted RBP15.92■□□□□ 0.14
HMGCS1-204ENST00000507293 SPG7Q9UQ90 795 aa15.92■□□□□ 0.14
HMGCS1-204ENST00000507293 UBR3Q6ZT12 1888 aa15.92■□□□□ 0.14
HMGCS1-204ENST00000507293 COL23A1Q86Y22 540 aaPredicted RBP15.91■□□□□ 0.14
HMGCS1-204ENST00000507293 NKX1-1Q15270 411 aaPredicted RBP15.9■□□□□ 0.14
HMGCS1-204ENST00000507293 EIF4A2Q14240 407 aaKnown RBP15.89■□□□□ 0.13
HMGCS1-204ENST00000507293 SMARCC1Q92922 1105 aaPredicted RBP15.89■□□□□ 0.13
HMGCS1-204ENST00000507293 PANK3Q9H999 370 aa15.89■□□□□ 0.13
HMGCS1-204ENST00000507293 PIGBQ92521 554 aa15.88■□□□□ 0.13
HMGCS1-204ENST00000507293 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.88■□□□□ 0.133e-15■□□□□ 9.2
HMGCS1-204ENST00000507293 MSL1Q68DK7 614 aa15.87■□□□□ 0.13
HMGCS1-204ENST00000507293 PHKG2P15735 406 aa15.86■□□□□ 0.13
HMGCS1-204ENST00000507293 HMGB2P26583 209 aaKnown RBP15.86■□□□□ 0.13
HMGCS1-204ENST00000507293 GPR162Q16538 588 aa15.86■□□□□ 0.13
HMGCS1-204ENST00000507293 IFNL2Q8IZJ0 200 aa15.86■□□□□ 0.13
HMGCS1-204ENST00000507293 NLGN2Q8NFZ4 835 aa15.86■□□□□ 0.13
HMGCS1-204ENST00000507293 IGSF1Q8N6C5 1336 aa15.86■□□□□ 0.13
HMGCS1-204ENST00000507293 PELP1Q8IZL8 1130 aaKnown RBP15.85■□□□□ 0.13
HMGCS1-204ENST00000507293 ZNF784Q8NCA9 323 aaPredicted RBP15.85■□□□□ 0.13
HMGCS1-204ENST00000507293 AK7Q96M32 723 aa15.85■□□□□ 0.13
HMGCS1-204ENST00000507293 TMOD3Q9NYL9 352 aa15.85■□□□□ 0.13
HMGCS1-204ENST00000507293 PLEKHG2Q9H7P9 1386 aa15.85■□□□□ 0.13
HMGCS1-204ENST00000507293 AMIGO3Q86WK7 504 aa15.84■□□□□ 0.13
HMGCS1-204ENST00000507293 FLAD1Q8NFF5 587 aa15.84■□□□□ 0.13
HMGCS1-204ENST00000507293 LOC102724428A0A0B4J2F2 783 aa15.83■□□□□ 0.12
HMGCS1-204ENST00000507293 PHF14O94880 888 aa15.83■□□□□ 0.12
HMGCS1-204ENST00000507293 SIK1P57059 783 aa15.83■□□□□ 0.12
HMGCS1-204ENST00000507293 ASAP1Q9ULH1 1129 aa15.83■□□□□ 0.12
HMGCS1-204ENST00000507293 ZNF831Q5JPB2 1677 aa15.83■□□□□ 0.12
HMGCS1-204ENST00000507293 SMIM5Q71RC9 77 aa15.82■□□□□ 0.12
HMGCS1-204ENST00000507293 MORC1Q86VD1 984 aa15.82■□□□□ 0.12
HMGCS1-204ENST00000507293 LINC00116Q8NCU8 138 aa15.82■□□□□ 0.12
HMGCS1-204ENST00000507293 COL5A3P25940 1745 aaPredicted RBP15.82■□□□□ 0.12
HMGCS1-204ENST00000507293 KDRP35968 1356 aa15.8■□□□□ 0.12
HMGCS1-204ENST00000507293 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.8■□□□□ 0.12
HMGCS1-204ENST00000507293 ITPK1Q13572 414 aa15.8■□□□□ 0.12
HMGCS1-204ENST00000507293 ATG3Q9NT62 314 aa15.8■□□□□ 0.12
HMGCS1-204ENST00000507293 VIRMAQ69YN4 1812 aaKnown RBP15.8■□□□□ 0.12
HMGCS1-204ENST00000507293 KDM6AO15550 1401 aaPredicted RBP15.79■□□□□ 0.12
HMGCS1-204ENST00000507293 ATP6V1AP38606 617 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 1787.2 ms