RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 DOT1LQ8TEK3 1739 aa24.57■■□□□ 1.52
NPHP4-210ENST00000506941 BCL9O00512 1426 aa24.54■■□□□ 1.52
NPHP4-210ENST00000506941 TATP17735 454 aaPredicted RBP24.54■■□□□ 1.52
NPHP4-210ENST00000506941 DIAPH1O60610 1272 aaKnown RBP24.53■■□□□ 1.52
NPHP4-210ENST00000506941 AEBP1Q8IUX7 1158 aa24.53■■□□□ 1.52
NPHP4-210ENST00000506941 ZCRB1Q8TBF4 217 aaKnown RBP24.53■■□□□ 1.52
NPHP4-210ENST00000506941 VIRMAQ69YN4 1812 aaKnown RBP24.53■■□□□ 1.52
NPHP4-210ENST00000506941 KDRP35968 1356 aa24.53■■□□□ 1.52
NPHP4-210ENST00000506941 TOGARAM1Q9Y4F4 1720 aa24.52■■□□□ 1.52
NPHP4-210ENST00000506941 BTAF1O14981 1849 aa24.51■■□□□ 1.51
NPHP4-210ENST00000506941 ITGB4P16144 1822 aa24.51■■□□□ 1.51
NPHP4-210ENST00000506941 TRIM37O94972 964 aa24.5■■□□□ 1.51
NPHP4-210ENST00000506941 RALBP1Q15311 655 aa24.5■■□□□ 1.51
NPHP4-210ENST00000506941 CCDC125Q86Z20 511 aa24.5■■□□□ 1.51
NPHP4-210ENST00000506941 DDX54Q8TDD1 881 aaKnown RBP24.5■■□□□ 1.51
NPHP4-210ENST00000506941 RGPD3A6NKT7 1758 aaPredicted RBP24.48■■□□□ 1.51
NPHP4-210ENST00000506941 SULT6B1Q6IMI4 303 aa24.48■■□□□ 1.51
NPHP4-210ENST00000506941 RGPD4Q7Z3J3 1758 aa24.48■■□□□ 1.51
NPHP4-210ENST00000506941 PLEKHG2Q9H7P9 1386 aa24.47■■□□□ 1.51
NPHP4-210ENST00000506941 CFAP53Q96M91 514 aa24.47■■□□□ 1.51
NPHP4-210ENST00000506941 PCDH11XQ9BZA7 1347 aa24.46■■□□□ 1.51
NPHP4-210ENST00000506941 PCDH11YQ9BZA8 1340 aa24.46■■□□□ 1.51
NPHP4-210ENST00000506941 PTF1AQ7RTS3 328 aa24.46■■□□□ 1.51
NPHP4-210ENST00000506941 RREB1Q92766 1687 aa24.46■■□□□ 1.51
NPHP4-210ENST00000506941 CYP27B1O15528 508 aa24.45■■□□□ 1.5
NPHP4-210ENST00000506941 HMOX1P09601 288 aa24.45■■□□□ 1.5
NPHP4-210ENST00000506941 DEFB132Q7Z7B7 95 aa24.44■■□□□ 1.5
NPHP4-210ENST00000506941 PRKRIP1Q9H875 184 aaPredicted RBP24.44■■□□□ 1.5
NPHP4-210ENST00000506941 MYBBP1AQ9BQG0 1328 aaKnown RBP24.43■■□□□ 1.5
NPHP4-210ENST00000506941 U2SURPO15042 1029 aaKnown RBP24.43■■□□□ 1.5
NPHP4-210ENST00000506941 SF3B2Q13435 895 aaKnown RBP24.43■■□□□ 1.5
NPHP4-210ENST00000506941 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.43■■□□□ 1.5
NPHP4-210ENST00000506941 SPG7Q9UQ90 795 aa24.43■■□□□ 1.5
NPHP4-210ENST00000506941 KCNQ2O43526 872 aa24.42■■□□□ 1.5
NPHP4-210ENST00000506941 ACSBG1Q96GR2 724 aa24.42■■□□□ 1.5
NPHP4-210ENST00000506941 SCN11AQ9UI33 1791 aa24.42■■□□□ 1.5
NPHP4-210ENST00000506941 NUP188Q5SRE5 1749 aa24.41■■□□□ 1.5
NPHP4-210ENST00000506941 BCL11BQ9C0K0 894 aaPredicted RBP24.4■■□□□ 1.5
NPHP4-210ENST00000506941 APBA3O96018 575 aa24.38■■□□□ 1.49
NPHP4-210ENST00000506941 BAG6P46379 1132 aa24.38■■□□□ 1.49
NPHP4-210ENST00000506941 PHKG2P15735 406 aa24.37■■□□□ 1.49
NPHP4-210ENST00000506941 EN1Q05925 392 aaPredicted RBP24.37■■□□□ 1.49
NPHP4-210ENST00000506941 PLEKHO1Q53GL0 409 aaPredicted RBP24.37■■□□□ 1.49
NPHP4-210ENST00000506941 LY75O60449 1722 aa24.36■■□□□ 1.49
NPHP4-210ENST00000506941 NKX1-1Q15270 411 aaPredicted RBP24.36■■□□□ 1.49
NPHP4-210ENST00000506941 NUDCQ9Y266 331 aa24.36■■□□□ 1.49
NPHP4-210ENST00000506941 DLG5Q8TDM6 1919 aa24.35■■□□□ 1.49
NPHP4-210ENST00000506941 AMOTQ4VCS5 1084 aa24.35■■□□□ 1.49
NPHP4-210ENST00000506941 ZNF530Q6P9A1 599 aaPredicted RBP24.35■■□□□ 1.49
NPHP4-210ENST00000506941 IFNL2Q8IZJ0 200 aa24.35■■□□□ 1.49
NPHP4-210ENST00000506941 RSPH6AQ9H0K4 717 aa24.35■■□□□ 1.49
NPHP4-210ENST00000506941 ADAMTS7Q9UKP4 1686 aa24.34■■□□□ 1.49
NPHP4-210ENST00000506941 PRIM1P49642 420 aaKnown RBP24.34■■□□□ 1.49
NPHP4-210ENST00000506941 CAMKK2Q96RR4 588 aa24.34■■□□□ 1.49
NPHP4-210ENST00000506941 U2AF1L5P0DN76 240 aaPredicted RBP24.33■■□□□ 1.49
NPHP4-210ENST00000506941 U2AF1Q01081 240 aaKnown RBP eCLIP24.33■■□□□ 1.49
NPHP4-210ENST00000506941 EZH2Q15910 746 aaKnown RBP24.33■■□□□ 1.49
NPHP4-210ENST00000506941 KDM6AO15550 1401 aaPredicted RBP24.33■■□□□ 1.49
NPHP4-210ENST00000506941 SYTL4Q96C24 671 aaPredicted RBP24.31■■□□□ 1.48
NPHP4-210ENST00000506941 PRKAR2BP31323 418 aa24.3■■□□□ 1.48
NPHP4-210ENST00000506941 MTHFSDQ2M296 383 aaKnown RBP24.3■■□□□ 1.48
NPHP4-210ENST00000506941 PLSCR1O15162 318 aa24.29■■□□□ 1.48
NPHP4-210ENST00000506941 PHACTR3Q96KR7 559 aa24.28■■□□□ 1.48
NPHP4-210ENST00000506941 SIPA1L3O60292 1781 aaPredicted RBP24.28■■□□□ 1.48
NPHP4-210ENST00000506941 FCHSD2O94868 740 aa24.27■■□□□ 1.48
NPHP4-210ENST00000506941 C1orf141Q5JVX7 400 aa24.27■■□□□ 1.48
NPHP4-210ENST00000506941 TAF1LQ8IZX4 1826 aa24.26■■□□□ 1.47
NPHP4-210ENST00000506941 DCAF5Q96JK2 942 aa24.26■■□□□ 1.47
NPHP4-210ENST00000506941 HSP90AB1P08238 724 aaKnown RBP24.25■■□□□ 1.47
NPHP4-210ENST00000506941 AKAP4Q5JQC9 854 aa24.25■■□□□ 1.47
NPHP4-210ENST00000506941 PROM2Q8N271 834 aa24.25■■□□□ 1.47
NPHP4-210ENST00000506941 PAPPAQ13219 1627 aa24.24■■□□□ 1.47
NPHP4-210ENST00000506941 ANP32CO43423 234 aa24.24■■□□□ 1.47
NPHP4-210ENST00000506941 MPRIPQ6WCQ1 1025 aa24.24■■□□□ 1.47
NPHP4-210ENST00000506941 CCDC184Q52MB2 194 aa24.23■■□□□ 1.47
NPHP4-210ENST00000506941 MRC1P22897 1456 aa24.23■■□□□ 1.47
NPHP4-210ENST00000506941 PIGBQ92521 554 aa24.22■■□□□ 1.47
NPHP4-210ENST00000506941 C5P01031 1676 aa24.21■■□□□ 1.47
NPHP4-210ENST00000506941 MAP3K5Q99683 1374 aa24.21■■□□□ 1.47
NPHP4-210ENST00000506941 PLEKHF1Q96S99 279 aa24.21■■□□□ 1.47
NPHP4-210ENST00000506941 TUBGCP6Q96RT7 1819 aa24.2■■□□□ 1.46
NPHP4-210ENST00000506941 ERVV-2B6SEH9 535 aa24.2■■□□□ 1.46
NPHP4-210ENST00000506941 TXNRD1Q16881 649 aa24.2■■□□□ 1.46
NPHP4-210ENST00000506941 GAS2L2Q8NHY3 880 aa24.2■■□□□ 1.46
NPHP4-210ENST00000506941 LGR6Q9HBX8 967 aa24.2■■□□□ 1.46
NPHP4-210ENST00000506941 TMOD3Q9NYL9 352 aa24.2■■□□□ 1.46
NPHP4-210ENST00000506941 RNMTO43148 476 aaKnown RBP24.17■■□□□ 1.46
NPHP4-210ENST00000506941 PALLDQ8WX93 1383 aa24.16■■□□□ 1.46
NPHP4-210ENST00000506941 UBR2Q8IWV8 1755 aa24.16■■□□□ 1.46
NPHP4-210ENST00000506941 ZNF831Q5JPB2 1677 aa24.16■■□□□ 1.46
NPHP4-210ENST00000506941 GNAT3A8MTJ3 354 aa24.16■■□□□ 1.46
NPHP4-210ENST00000506941 LRRC4BQ9NT99 713 aa24.16■■□□□ 1.46
NPHP4-210ENST00000506941 CABP4P57796 275 aa24.15■■□□□ 1.46
NPHP4-210ENST00000506941 WDR43Q15061 677 aaKnown RBP eCLIP24.15■■□□□ 1.46
NPHP4-210ENST00000506941 ASAP1Q9ULH1 1129 aa24.15■■□□□ 1.46
NPHP4-210ENST00000506941 ADAMTS8Q9UP79 889 aa24.15■■□□□ 1.46
NPHP4-210ENST00000506941 KCNQ4P56696 695 aa24.14■■□□□ 1.45
NPHP4-210ENST00000506941 NFATC2IPQ8NCF5 419 aa24.14■■□□□ 1.45
NPHP4-210ENST00000506941 COL5A3P25940 1745 aaPredicted RBP24.13■■□□□ 1.45
NPHP4-210ENST00000506941 QSER1Q2KHR3 1735 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms