RNA–Protein interactions for RNA: ENST00000506409.1

MED28-204, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 347 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-204ENST00000506409 KCNQ2O43526 872 aa21.21■□□□□ 0.99
MED28-204ENST00000506409 NHSQ6T4R5 1651 aa21.21■□□□□ 0.99
MED28-204ENST00000506409 RGPD3A6NKT7 1758 aaPredicted RBP21.2■□□□□ 0.99
MED28-204ENST00000506409 RGPD4Q7Z3J3 1758 aa21.2■□□□□ 0.99
MED28-204ENST00000506409 PSDA5PKW4 1024 aaPredicted RBP21.2■□□□□ 0.98
MED28-204ENST00000506409 SHANK3Q9BYB0 1731 aa21.19■□□□□ 0.98
MED28-204ENST00000506409 EIF4A2Q14240 407 aaKnown RBP21.19■□□□□ 0.98
MED28-204ENST00000506409 EYA1Q99502 592 aa21.19■□□□□ 0.98
MED28-204ENST00000506409 NCAPD2Q15021 1401 aa21.19■□□□□ 0.98
MED28-204ENST00000506409 NUP188Q5SRE5 1749 aa21.18■□□□□ 0.98
MED28-204ENST00000506409 R3HDM1Q15032 1099 aaKnown RBP21.17■□□□□ 0.98
MED28-204ENST00000506409 CC2D1BQ5T0F9 858 aaKnown RBP21.17■□□□□ 0.98
MED28-204ENST00000506409 KAT6BQ8WYB5 2073 aa21.16■□□□□ 0.98
MED28-204ENST00000506409 PCDH11XQ9BZA7 1347 aa21.15■□□□□ 0.98
MED28-204ENST00000506409 PCDH11YQ9BZA8 1340 aa21.15■□□□□ 0.98
MED28-204ENST00000506409 NBPF14Q5TI25 921 aa21.15■□□□□ 0.98
MED28-204ENST00000506409 SRCAPQ6ZRS2 3230 aa21.14■□□□□ 0.97
MED28-204ENST00000506409 NPC1L1Q9UHC9 1359 aa21.13■□□□□ 0.97
MED28-204ENST00000506409 PROM2Q8N271 834 aa21.13■□□□□ 0.97
MED28-204ENST00000506409 SYTL4Q96C24 671 aaPredicted RBP21.13■□□□□ 0.97
MED28-204ENST00000506409 BTAF1O14981 1849 aa21.13■□□□□ 0.97
MED28-204ENST00000506409 DOT1LQ8TEK3 1739 aa21.12■□□□□ 0.97
MED28-204ENST00000506409 IGSF1Q8N6C5 1336 aa21.12■□□□□ 0.97
MED28-204ENST00000506409 TXNRD1Q16881 649 aa21.12■□□□□ 0.97
MED28-204ENST00000506409 PRIM1P49642 420 aaKnown RBP21.11■□□□□ 0.97
MED28-204ENST00000506409 CNGB1Q14028 1251 aaPredicted RBP21.11■□□□□ 0.97
MED28-204ENST00000506409 SPG7Q9UQ90 795 aa21.11■□□□□ 0.97
MED28-204ENST00000506409 PKD1L3Q7Z443 1732 aa21.11■□□□□ 0.97
MED28-204ENST00000506409 CYP27B1O15528 508 aa21.1■□□□□ 0.97
MED28-204ENST00000506409 MTHFSP49914 203 aa21.09■□□□□ 0.97
MED28-204ENST00000506409 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.09■□□□□ 0.97
MED28-204ENST00000506409 ANO8Q9HCE9 1232 aaPredicted RBP21.07■□□□□ 0.96
MED28-204ENST00000506409 PLEKHG2Q9H7P9 1386 aa21.07■□□□□ 0.96
MED28-204ENST00000506409 IL13P35225 146 aa21.05■□□□□ 0.96
MED28-204ENST00000506409 AEBP1Q8IUX7 1158 aa21.04■□□□□ 0.96
MED28-204ENST00000506409 NKX1-1Q15270 411 aaPredicted RBP21.03■□□□□ 0.96
MED28-204ENST00000506409 IFNL2Q8IZJ0 200 aa21.03■□□□□ 0.96
MED28-204ENST00000506409 STK32BQ9NY57 414 aa21.03■□□□□ 0.96
MED28-204ENST00000506409 LRP5O75197 1615 aa21.03■□□□□ 0.96
MED28-204ENST00000506409 SULT6B1Q6IMI4 303 aa21.02■□□□□ 0.96
MED28-204ENST00000506409 KDRP35968 1356 aa21.01■□□□□ 0.95
MED28-204ENST00000506409 PHKG2P15735 406 aa21.01■□□□□ 0.95
MED28-204ENST00000506409 PLEKHO1Q53GL0 409 aaPredicted RBP21.01■□□□□ 0.95
MED28-204ENST00000506409 SLC27A3Q5K4L6 730 aa21.01■□□□□ 0.95
MED28-204ENST00000506409 MPRIPQ6WCQ1 1025 aa21.01■□□□□ 0.95
MED28-204ENST00000506409 TOGARAM1Q9Y4F4 1720 aa21.01■□□□□ 0.95
MED28-204ENST00000506409 DIAPH1O60610 1272 aaKnown RBP21■□□□□ 0.95
MED28-204ENST00000506409 LRRC4BQ9NT99 713 aa21■□□□□ 0.95
MED28-204ENST00000506409 SLC15A2Q16348 729 aa20.99■□□□□ 0.95
MED28-204ENST00000506409 AMOTQ4VCS5 1084 aa20.99■□□□□ 0.95
MED28-204ENST00000506409 PAPPAQ13219 1627 aa20.98■□□□□ 0.95
MED28-204ENST00000506409 LY75O60449 1722 aa20.98■□□□□ 0.95
MED28-204ENST00000506409 ZNF530Q6P9A1 599 aaPredicted RBP20.97■□□□□ 0.95
MED28-204ENST00000506409 ITGB4P16144 1822 aa20.97■□□□□ 0.95
MED28-204ENST00000506409 KCNQ4P56696 695 aa20.96■□□□□ 0.95
MED28-204ENST00000506409 CCNL1Q9UK58 526 aaPredicted RBP20.96■□□□□ 0.95
MED28-204ENST00000506409 COL3A1P02461 1466 aaPredicted RBP20.95■□□□□ 0.94
MED28-204ENST00000506409 HSP90AB1P08238 724 aaKnown RBP20.95■□□□□ 0.94
MED28-204ENST00000506409 HMOX1P09601 288 aa20.95■□□□□ 0.94
MED28-204ENST00000506409 PIGBQ92521 554 aa20.95■□□□□ 0.94
MED28-204ENST00000506409 TMOD3Q9NYL9 352 aa20.95■□□□□ 0.94
MED28-204ENST00000506409 PALLDQ8WX93 1383 aa20.95■□□□□ 0.94
MED28-204ENST00000506409 ZNF827Q17R98 1081 aa20.94■□□□□ 0.94
MED28-204ENST00000506409 C1orf141Q5JVX7 400 aa20.94■□□□□ 0.94
MED28-204ENST00000506409 CASZ1Q86V15 1759 aa20.94■□□□□ 0.94
MED28-204ENST00000506409 SMARCC1Q92922 1105 aaPredicted RBP20.93■□□□□ 0.94
MED28-204ENST00000506409 DCAF5Q96JK2 942 aa20.93■□□□□ 0.94
MED28-204ENST00000506409 CFAP53Q96M91 514 aa20.93■□□□□ 0.94
MED28-204ENST00000506409 PDGFDQ9GZP0 370 aaPredicted RBP20.93■□□□□ 0.94
MED28-204ENST00000506409 SPON1Q9HCB6 807 aa20.93■□□□□ 0.94
MED28-204ENST00000506409 U2SURPO15042 1029 aaKnown RBP20.92■□□□□ 0.94
MED28-204ENST00000506409 PPP2R1AP30153 589 aa20.92■□□□□ 0.94
MED28-204ENST00000506409 AKT1S1Q96B36 256 aa20.91■□□□□ 0.94
MED28-204ENST00000506409 KDM6AO15550 1401 aaPredicted RBP20.9■□□□□ 0.94
MED28-204ENST00000506409 ERVV-2B6SEH9 535 aa20.9■□□□□ 0.94
MED28-204ENST00000506409 ZBTB7AO95365 584 aa20.89■□□□□ 0.93
MED28-204ENST00000506409 ZEB1P37275 1124 aaPredicted RBP20.89■□□□□ 0.93
MED28-204ENST00000506409 TFCP2L1Q9NZI6 479 aa20.88■□□□□ 0.93
MED28-204ENST00000506409 ASAP1Q9ULH1 1129 aa20.88■□□□□ 0.93
MED28-204ENST00000506409 HMGB2P26583 209 aaKnown RBP20.87■□□□□ 0.93
MED28-204ENST00000506409 CABP4P57796 275 aa20.86■□□□□ 0.93
MED28-204ENST00000506409 DDX10Q13206 875 aaKnown RBP20.86■□□□□ 0.93
MED28-204ENST00000506409 AKAP4Q5JQC9 854 aa20.86■□□□□ 0.93
MED28-204ENST00000506409 ATG3Q9NT62 314 aa20.86■□□□□ 0.93
MED28-204ENST00000506409 NUDCQ9Y266 331 aa20.86■□□□□ 0.93
MED28-204ENST00000506409 C5P01031 1676 aa20.86■□□□□ 0.93
MED28-204ENST00000506409 LOC102724428A0A0B4J2F2 783 aa20.85■□□□□ 0.93
MED28-204ENST00000506409 SIK1P57059 783 aa20.85■□□□□ 0.93
MED28-204ENST00000506409 MTFR1LQ9H019 292 aa20.85■□□□□ 0.93
MED28-204ENST00000506409 PPP1R1BQ9UD71 204 aaPredicted RBP20.85■□□□□ 0.93
MED28-204ENST00000506409 ATF5Q9Y2D1 282 aaPredicted RBP20.85■□□□□ 0.93
MED28-204ENST00000506409 QSER1Q2KHR3 1735 aa20.84■□□□□ 0.93
MED28-204ENST00000506409 PNPLA7Q6ZV29 1317 aa20.84■□□□□ 0.93
MED28-204ENST00000506409 MTHFSDQ2M296 383 aaKnown RBP20.84■□□□□ 0.93
MED28-204ENST00000506409 TAF1LQ8IZX4 1826 aa20.83■□□□□ 0.92
MED28-204ENST00000506409 TUBGCP6Q96RT7 1819 aa20.83■□□□□ 0.92
MED28-204ENST00000506409 U2AF1L5P0DN76 240 aaPredicted RBP20.81■□□□□ 0.92
MED28-204ENST00000506409 PTGER2P43116 358 aa20.81■□□□□ 0.92
MED28-204ENST00000506409 U2AF1Q01081 240 aaKnown RBP eCLIP20.81■□□□□ 0.92
MED28-204ENST00000506409 NFATC2IPQ8NCF5 419 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms