RNA–Protein interactions for RNA: ENST00000505944.5

NR1I3-221, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best)

Gene NR1I3, Length 865 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-221ENST00000505944 PDGFDQ9GZP0 370 aaPredicted RBP9.61□□□□□ -0.87
NR1I3-221ENST00000505944 CABP1Q9NZU7 370 aa9.61□□□□□ -0.87
NR1I3-221ENST00000505944 PAPPAQ13219 1627 aa9.6□□□□□ -0.87
NR1I3-221ENST00000505944 AXIN2Q9Y2T1 843 aa9.6□□□□□ -0.87
NR1I3-221ENST00000505944 BTAF1O14981 1849 aa9.6□□□□□ -0.87
NR1I3-221ENST00000505944 GOLGB1Q14789 3259 aaKnown RBP9.6□□□□□ -0.87
NR1I3-221ENST00000505944 TIMELESSQ9UNS1 1208 aa9.59□□□□□ -0.87
NR1I3-221ENST00000505944 USP47Q96K76 1375 aa9.59□□□□□ -0.87
NR1I3-221ENST00000505944 COL24A1Q17RW2 1714 aa9.59□□□□□ -0.87
NR1I3-221ENST00000505944 TTC21BQ7Z4L5 1316 aa9.58□□□□□ -0.88
NR1I3-221ENST00000505944 HSPA5P11021 654 aaKnown RBP9.58□□□□□ -0.88
NR1I3-221ENST00000505944 IL2RBP14784 551 aa9.58□□□□□ -0.88
NR1I3-221ENST00000505944 ST20-MTHFSA0A0A6YYL1 179 aa9.57□□□□□ -0.88
NR1I3-221ENST00000505944 POLR3GLQ9BT43 218 aa9.57□□□□□ -0.88
NR1I3-221ENST00000505944 KAT6BQ8WYB5 2073 aa9.57□□□□□ -0.88
NR1I3-221ENST00000505944 ERBB3P21860 1342 aa9.56□□□□□ -0.88
NR1I3-221ENST00000505944 SOX12O15370 315 aa9.56□□□□□ -0.88
NR1I3-221ENST00000505944 AKT1S1Q96B36 256 aa9.56□□□□□ -0.88
NR1I3-221ENST00000505944 TUBGCP6Q96RT7 1819 aa9.56□□□□□ -0.88
NR1I3-221ENST00000505944 FAM208AQ9UK61 1670 aaKnown RBP9.55□□□□□ -0.88
NR1I3-221ENST00000505944 USP31Q70CQ4 1352 aa9.55□□□□□ -0.88
NR1I3-221ENST00000505944 SHANK3Q9BYB0 1731 aa9.54□□□□□ -0.88
NR1I3-221ENST00000505944 KTN1Q86UP2 1357 aaKnown RBP9.54□□□□□ -0.88
NR1I3-221ENST00000505944 NLRP2Q9NX02 1062 aa9.54□□□□□ -0.88
NR1I3-221ENST00000505944 TFCP2L1Q9NZI6 479 aa9.54□□□□□ -0.88
NR1I3-221ENST00000505944 SPDYE4A6NLX3 237 aa9.53□□□□□ -0.88
NR1I3-221ENST00000505944 EIF4G2P78344 907 aaKnown RBP eCLIP9.53□□□□□ -0.88
NR1I3-221ENST00000505944 ZNF827Q17R98 1081 aa9.53□□□□□ -0.88
NR1I3-221ENST00000505944 FLAD1Q8NFF5 587 aa9.53□□□□□ -0.88
NR1I3-221ENST00000505944 ACSBG1Q96GR2 724 aa9.53□□□□□ -0.88
NR1I3-221ENST00000505944 TESK2Q96S53 571 aa9.53□□□□□ -0.88
NR1I3-221ENST00000505944 DOT1LQ8TEK3 1739 aa9.53□□□□□ -0.88
NR1I3-221ENST00000505944 ANKRD36BQ8N2N9 1353 aa9.52□□□□□ -0.88
NR1I3-221ENST00000505944 SBNO2Q9Y2G9 1366 aa9.52□□□□□ -0.88
NR1I3-221ENST00000505944 LY75O60449 1722 aa9.52□□□□□ -0.89
NR1I3-221ENST00000505944 ZEB1P37275 1124 aaPredicted RBP9.52□□□□□ -0.89
NR1I3-221ENST00000505944 PELP1Q8IZL8 1130 aaKnown RBP9.52□□□□□ -0.89
NR1I3-221ENST00000505944 KLHL34Q8N239 644 aa9.52□□□□□ -0.89
NR1I3-221ENST00000505944 GPBP1L1Q9HC44 474 aaPredicted RBP9.52□□□□□ -0.89
NR1I3-221ENST00000505944 LRRC4BQ9NT99 713 aa9.52□□□□□ -0.89
NR1I3-221ENST00000505944 CD2APQ9Y5K6 639 aa9.52□□□□□ -0.89
NR1I3-221ENST00000505944 CD163L1Q9NR16 1453 aa9.52□□□□□ -0.89
NR1I3-221ENST00000505944 PNPLA7Q6ZV29 1317 aa9.52□□□□□ -0.89
NR1I3-221ENST00000505944 HSPA6P17066 643 aa9.51□□□□□ -0.89
NR1I3-221ENST00000505944 CGNL1Q0VF96 1302 aa9.51□□□□□ -0.89
NR1I3-221ENST00000505944 RGPD2P0DJD1 1756 aa9.5□□□□□ -0.89
NR1I3-221ENST00000505944 ATP10DQ9P241 1426 aa9.5□□□□□ -0.89
NR1I3-221ENST00000505944 HDGFL2Q7Z4V5 671 aaPredicted RBP9.5□□□□□ -0.89
NR1I3-221ENST00000505944 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.5□□□□□ -0.89
NR1I3-221ENST00000505944 ANKRD24Q8TF21 1146 aa9.5□□□□□ -0.89
NR1I3-221ENST00000505944 NSD3Q9BZ95 1437 aa9.49□□□□□ -0.89
NR1I3-221ENST00000505944 SLC24A1O60721 1099 aa9.49□□□□□ -0.89
NR1I3-221ENST00000505944 NME9Q86XW9 330 aa9.49□□□□□ -0.89
NR1I3-221ENST00000505944 ADCY9O60503 1353 aa9.49□□□□□ -0.89
NR1I3-221ENST00000505944 EDC4Q6P2E9 1401 aaKnown RBP9.48□□□□□ -0.89
NR1I3-221ENST00000505944 NLGN2Q8NFZ4 835 aa9.48□□□□□ -0.89
NR1I3-221ENST00000505944 IP6K1Q92551 441 aa9.48□□□□□ -0.89
NR1I3-221ENST00000505944 PUS7Q96PZ0 661 aaKnown RBP9.48□□□□□ -0.89
NR1I3-221ENST00000505944 TERF2IPQ9NYB0 399 aa9.48□□□□□ -0.89
NR1I3-221ENST00000505944 CCNL1Q9UK58 526 aaPredicted RBP9.48□□□□□ -0.89
NR1I3-221ENST00000505944 YBX3P16989 372 aaKnown RBP eCLIP9.47□□□□□ -0.89
NR1I3-221ENST00000505944 CHRDL2Q6WN34 429 aa9.47□□□□□ -0.89
NR1I3-221ENST00000505944 DDX54Q8TDD1 881 aaKnown RBP9.47□□□□□ -0.89
NR1I3-221ENST00000505944 TMC1Q8TDI8 760 aa9.47□□□□□ -0.89
NR1I3-221ENST00000505944 SYTL4Q96C24 671 aaPredicted RBP9.47□□□□□ -0.89
NR1I3-221ENST00000505944 A0A1W2PP64 1363 aa9.47□□□□□ -0.89
NR1I3-221ENST00000505944 PRIM1P49642 420 aaKnown RBP9.46□□□□□ -0.9
NR1I3-221ENST00000505944 APLP1P51693 650 aa9.46□□□□□ -0.9
NR1I3-221ENST00000505944 CNGB1Q14028 1251 aaPredicted RBP9.46□□□□□ -0.9
NR1I3-221ENST00000505944 C5P01031 1676 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 SPDYE2BA6NHP3 402 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 SPDYE6P0CI01 402 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 TMF1P82094 1093 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 SPDYE2Q495Y8 402 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 ZCRB1Q8TBF4 217 aaKnown RBP9.45□□□□□ -0.9
NR1I3-221ENST00000505944 SLC12A5Q9H2X9 1139 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 KIF7Q2M1P5 1343 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 RTL1A6NKG5 1358 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 TAF1LQ8IZX4 1826 aa9.45□□□□□ -0.9
NR1I3-221ENST00000505944 COL23A1Q86Y22 540 aaPredicted RBP9.44□□□□□ -0.9
NR1I3-221ENST00000505944 WASHC2AQ641Q2 1341 aa9.44□□□□□ -0.9
NR1I3-221ENST00000505944 NSD2O96028 1365 aa9.44□□□□□ -0.9
NR1I3-221ENST00000505944 SMG6Q86US8 1419 aaKnown RBP9.44□□□□□ -0.9
NR1I3-221ENST00000505944 MEGF6O75095 1541 aa9.43□□□□□ -0.9
NR1I3-221ENST00000505944 SMARCC1Q92922 1105 aaPredicted RBP9.43□□□□□ -0.9
NR1I3-221ENST00000505944 KCNQ4P56696 695 aa9.42□□□□□ -0.9
NR1I3-221ENST00000505944 RAPGEF4Q8WZA2 1011 aa9.42□□□□□ -0.9
NR1I3-221ENST00000505944 LTV1Q96GA3 475 aaPredicted RBP9.42□□□□□ -0.9
NR1I3-221ENST00000505944 COG3Q96JB2 828 aa9.42□□□□□ -0.9
NR1I3-221ENST00000505944 KIF20BQ96Q89 1820 aa9.42□□□□□ -0.9
NR1I3-221ENST00000505944 KIF24Q5T7B8 1368 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 PCDH11XQ9BZA7 1347 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 PCDH11YQ9BZA8 1340 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 ITGB4P16144 1822 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 TOMM70O94826 608 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 AMPHP49418 695 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 SSUH2Q9Y2M2 353 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 TOGARAM1Q9Y4F4 1720 aa9.41□□□□□ -0.9
NR1I3-221ENST00000505944 CICQ96RK0 1608 aaPredicted RBP9.41□□□□□ -0.9
NR1I3-221ENST00000505944 PALLDQ8WX93 1383 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms