RNA–Protein interactions for RNA: ENST00000504841.6

NPIPB3-203, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

APPRIS P1 TSL 1 (best)

Gene NPIPB3, Length 1,254 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-203ENST00000504841 TFCP2L1Q9NZI6 479 aa9.84□□□□□ -0.83
NPIPB3-203ENST00000504841 USP31Q70CQ4 1352 aa9.84□□□□□ -0.83
NPIPB3-203ENST00000504841 SLC27A3Q5K4L6 730 aa9.83□□□□□ -0.84
NPIPB3-203ENST00000504841 SIN3AQ96ST3 1273 aa9.83□□□□□ -0.84
NPIPB3-203ENST00000504841 TUBGCP6Q96RT7 1819 aa9.83□□□□□ -0.84
NPIPB3-203ENST00000504841 SBNO2Q9Y2G9 1366 aa9.83□□□□□ -0.84
NPIPB3-203ENST00000504841 DOT1LQ8TEK3 1739 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 SHANK3Q9BYB0 1731 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 MSL1Q68DK7 614 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 HDGFL2Q7Z4V5 671 aaPredicted RBP9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 SLC16A10Q8TF71 515 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 CD163L1Q9NR16 1453 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 USP54Q70EL1 1684 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 QSER1Q2KHR3 1735 aa9.82□□□□□ -0.84
NPIPB3-203ENST00000504841 YBX3P16989 372 aaKnown RBP eCLIP9.81□□□□□ -0.84
NPIPB3-203ENST00000504841 PRIM1P49642 420 aaKnown RBP9.81□□□□□ -0.84
NPIPB3-203ENST00000504841 SLC12A5Q9H2X9 1139 aa9.81□□□□□ -0.84
NPIPB3-203ENST00000504841 ANKRD36BQ8N2N9 1353 aa9.8□□□□□ -0.84
NPIPB3-203ENST00000504841 CCNL1Q9UK58 526 aaPredicted RBP9.8□□□□□ -0.84
NPIPB3-203ENST00000504841 EDC4Q6P2E9 1401 aaKnown RBP9.8□□□□□ -0.84
NPIPB3-203ENST00000504841 A0A1W2PP64 1363 aa9.79□□□□□ -0.84
NPIPB3-203ENST00000504841 IFFO2Q5TF58 517 aa9.79□□□□□ -0.84
NPIPB3-203ENST00000504841 CARD11Q9BXL7 1154 aa9.79□□□□□ -0.84
NPIPB3-203ENST00000504841 FAM208AQ9UK61 1670 aaKnown RBP9.79□□□□□ -0.84
NPIPB3-203ENST00000504841 ATP10DQ9P241 1426 aa9.79□□□□□ -0.84
NPIPB3-203ENST00000504841 NSD2O96028 1365 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 MEGF6O75095 1541 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 AMPHP49418 695 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 COL23A1Q86Y22 540 aaPredicted RBP9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 ZNF526Q8TF50 670 aaPredicted RBP9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 IP6K1Q92551 441 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 TERF2IPQ9NYB0 399 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 WWC3Q9ULE0 1092 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 LY75O60449 1722 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 COL24A1Q17RW2 1714 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 MAP3K19Q56UN5 1328 aa9.78□□□□□ -0.84
NPIPB3-203ENST00000504841 USP47Q96K76 1375 aa9.77□□□□□ -0.84
NPIPB3-203ENST00000504841 GRIN3BO60391 1043 aa9.77□□□□□ -0.85
NPIPB3-203ENST00000504841 FBLN1P23142 703 aa9.77□□□□□ -0.85
NPIPB3-203ENST00000504841 ZCRB1Q8TBF4 217 aaKnown RBP9.77□□□□□ -0.85
NPIPB3-203ENST00000504841 RGPD2P0DJD1 1756 aa9.76□□□□□ -0.85
NPIPB3-203ENST00000504841 HOXC9P31274 260 aa9.76□□□□□ -0.85
NPIPB3-203ENST00000504841 USHBP1Q8N6Y0 703 aa9.76□□□□□ -0.85
NPIPB3-203ENST00000504841 COG3Q96JB2 828 aa9.76□□□□□ -0.85
NPIPB3-203ENST00000504841 GPBP1L1Q9HC44 474 aaPredicted RBP9.75□□□□□ -0.85
NPIPB3-203ENST00000504841 SPINK5Q9NQ38 1064 aaPredicted RBP9.75□□□□□ -0.85
NPIPB3-203ENST00000504841 CAPN15O75808 1086 aa9.74□□□□□ -0.85
NPIPB3-203ENST00000504841 C5P01031 1676 aa9.74□□□□□ -0.85
NPIPB3-203ENST00000504841 PHF14O94880 888 aa9.73□□□□□ -0.85
NPIPB3-203ENST00000504841 RRS1Q15050 365 aaKnown RBP9.73□□□□□ -0.85
NPIPB3-203ENST00000504841 RAPGEF4Q8WZA2 1011 aa9.73□□□□□ -0.85
NPIPB3-203ENST00000504841 PALLDQ8WX93 1383 aa9.73□□□□□ -0.85
NPIPB3-203ENST00000504841 SMG6Q86US8 1419 aaKnown RBP9.73□□□□□ -0.85
NPIPB3-203ENST00000504841 UTRNP46939 3433 aa9.72□□□□□ -0.85
NPIPB3-203ENST00000504841 NBPF6Q5VWK0 638 aa9.72□□□□□ -0.85
NPIPB3-203ENST00000504841 MPRIPQ6WCQ1 1025 aa9.72□□□□□ -0.85
NPIPB3-203ENST00000504841 AK7Q96M32 723 aa9.72□□□□□ -0.85
NPIPB3-203ENST00000504841 NBPF4Q96M43 638 aa9.72□□□□□ -0.85
NPIPB3-203ENST00000504841 HSPA6P17066 643 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 TATP17735 454 aaPredicted RBP9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 SMIM5Q71RC9 77 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 CD2APQ9Y5K6 639 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 IGSF1Q8N6C5 1336 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 PCDH11XQ9BZA7 1347 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 PCDH11YQ9BZA8 1340 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 RTL1A6NKG5 1358 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 ADCY9O60503 1353 aa9.71□□□□□ -0.86
NPIPB3-203ENST00000504841 FLAD1Q8NFF5 587 aa9.7□□□□□ -0.86
NPIPB3-203ENST00000504841 GGNBP2Q9H3C7 697 aa9.7□□□□□ -0.86
NPIPB3-203ENST00000504841 TONSLQ96HA7 1378 aa9.7□□□□□ -0.86
NPIPB3-203ENST00000504841 C4BP0C0L5 1744 aa9.7□□□□□ -0.86
NPIPB3-203ENST00000504841 ATXN8OSP0DMR3 200 aa9.69□□□□□ -0.86
NPIPB3-203ENST00000504841 AMIGO3Q86WK7 504 aa9.69□□□□□ -0.86
NPIPB3-203ENST00000504841 TAF1LQ8IZX4 1826 aa9.69□□□□□ -0.86
NPIPB3-203ENST00000504841 TOGARAM1Q9Y4F4 1720 aa9.68□□□□□ -0.86
NPIPB3-203ENST00000504841 CGNL1Q0VF96 1302 aa9.68□□□□□ -0.86
NPIPB3-203ENST00000504841 ST20-MTHFSA0A0A6YYL1 179 aa9.68□□□□□ -0.86
NPIPB3-203ENST00000504841 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.68□□□□□ -0.86
NPIPB3-203ENST00000504841 HSP90AB2PQ58FF8 381 aa9.68□□□□□ -0.86
NPIPB3-203ENST00000504841 ZNF219Q9P2Y4 722 aaPredicted RBP9.68□□□□□ -0.86
NPIPB3-203ENST00000504841 CYP27B1O15528 508 aa9.67□□□□□ -0.86
NPIPB3-203ENST00000504841 SMARCC1Q92922 1105 aaPredicted RBP9.67□□□□□ -0.86
NPIPB3-203ENST00000504841 PUS7Q96PZ0 661 aaKnown RBP9.67□□□□□ -0.86
NPIPB3-203ENST00000504841 TESK2Q96S53 571 aa9.67□□□□□ -0.86
NPIPB3-203ENST00000504841 NSD3Q9BZ95 1437 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 INSRP06213 1382 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 FYB1O15117 783 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 GNPATO15228 680 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 PIGBQ92521 554 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 UBR3Q6ZT12 1888 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 ITGB4P16144 1822 aa9.66□□□□□ -0.86
NPIPB3-203ENST00000504841 FLT4P35916 1363 aa9.65□□□□□ -0.86
NPIPB3-203ENST00000504841 KIF3CO14782 793 aa9.65□□□□□ -0.86
NPIPB3-203ENST00000504841 PPM1GO15355 546 aaPredicted RBP9.65□□□□□ -0.86
NPIPB3-203ENST00000504841 LINC00116Q8NCU8 138 aa9.65□□□□□ -0.86
NPIPB3-203ENST00000504841 KIF20BQ96Q89 1820 aa9.65□□□□□ -0.86
NPIPB3-203ENST00000504841 LOC102724428A0A0B4J2F2 783 aa9.64□□□□□ -0.87
NPIPB3-203ENST00000504841 MMP10P09238 476 aa9.64□□□□□ -0.87
NPIPB3-203ENST00000504841 HMGB2P26583 209 aaKnown RBP9.64□□□□□ -0.87
NPIPB3-203ENST00000504841 SSFA2P28290 1259 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms