RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KDM2BQ8NHM5 1336 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 WDR33Q9C0J8 1336 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 CPLX1O14810 134 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 PDCP20941 246 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 CCDC39Q9UFE4 941 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 UNC13BO14795 1591 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 MAGI2Q86UL8 1455 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 MRPL50Q8N5N7 158 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 GRPEL1Q9HAV7 217 aa12.94□□□□□ -0.34
LIMCH1-205ENST00000503057 GTF2E1P29083 439 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 AMOTQ4VCS5 1084 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 EXOC6BQ9Y2D4 811 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 CYP46A1Q9Y6A2 500 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 TRIM29Q14134 588 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 AEBP1Q8IUX7 1158 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 SPINK5Q9NQ38 1064 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 KIF1BO60333 1816 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 ANKRD1Q15327 319 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 KIF1BPQ96EK5 621 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 TRPM1Q7Z4N2 1603 aa12.93□□□□□ -0.34
LIMCH1-205ENST00000503057 FAM83GA6ND36 823 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 SMARCA5O60264 1052 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 TSPY26PQ9H489 355 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 PHF8Q9UPP1 1060 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 SASS6Q6UVJ0 657 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 CABP4P57796 275 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 TBC1D9Q6ZT07 1266 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 TET3O43151 1660 aa12.92□□□□□ -0.34
LIMCH1-205ENST00000503057 APPP05067 770 aa12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 RLBP1P12271 317 aa12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 AKAP17AQ02040 695 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 DNAJC2Q99543 621 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 IL1RAPL2Q9NP60 686 aa12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 MAP4K4O95819 1239 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 HSP90AA2PQ14568 343 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 AACSQ86V21 672 aa12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 FLIIQ13045 1269 aa12.91□□□□□ -0.34
LIMCH1-205ENST00000503057 ZFYVE16Q7Z3T8 1539 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 TTC22Q5TAA0 569 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 IL27Q8NEV9 243 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 RALYLQ86SE5 291 aaKnown RBP12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 F6X3S4 739 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 FBLN1P23142 703 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 CCDC73Q6ZRK6 1079 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 ZSCAN31Q96LW9 406 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 WASHC4Q2M389 1173 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 KIF6Q6ZMV9 814 aa12.9□□□□□ -0.34
LIMCH1-205ENST00000503057 ERVK-7P63135 1459 aa12.9□□□□□ -0.35
LIMCH1-205ENST00000503057 EDC4Q6P2E9 1401 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 BCORL1Q5H9F3 1711 aa12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 NUTM1Q86Y26 1132 aa12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 PIK3R4Q99570 1358 aa12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 PLA2R1Q13018 1463 aa12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 ARAP3Q8WWN8 1544 aa12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 GLRX3O76003 335 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-205ENST00000503057 TPM3P06753 285 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 MYL6BP14649 208 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 SIL1Q9H173 461 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 TNNQ9UQP3 1299 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 CEBPAP49715 358 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 EIF4A2Q14240 407 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 CWC27Q6UX04 472 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 LRRFIP2Q9Y608 721 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 TMX4Q9H1E5 349 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 ZBTB40Q9NUA8 1239 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 VAMP4O75379 141 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 DNAAF4Q8WXU2 420 aa12.88□□□□□ -0.35
LIMCH1-205ENST00000503057 NFXL1Q6ZNB6 911 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 USHBP1Q8N6Y0 703 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 C8orf58Q8NAV2 365 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 PDRG1Q9NUG6 133 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 RASSF8Q8NHQ8 419 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 HOOK1Q9UJC3 728 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 RNF214Q8ND24 703 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 ERICH2A1L162 156 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 SMC5Q8IY18 1101 aa12.87□□□□□ -0.35
LIMCH1-205ENST00000503057 HSP90AB2PQ58FF8 381 aa12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 CCDC158Q5M9N0 1113 aa12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 ANKRD44Q8N8A2 993 aa12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 TNPO1Q92973 898 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 DBF4Q9UBU7 674 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 LARP1Q6PKG0 1096 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 FLT4P35916 1363 aa12.86□□□□□ -0.35
LIMCH1-205ENST00000503057 FIBPO43427 364 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 XPCQ01831 940 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 JAKMIP1Q96N16 626 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 KRT32Q14532 448 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 HYPKQ9NX55 129 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 CDC42BPBQ9Y5S2 1711 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 ZMYM3Q14202 1370 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 TTC39AQ5SRH9 613 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 BLOC1S2Q6QNY1 142 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 TOM1L2Q6ZVM7 507 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 SNX21Q969T3 373 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 TBC1D2BQ9UPU7 963 aa12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 DHX16O60231 1041 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-205ENST00000503057 NAT10Q9H0A0 1025 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms