RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 PLEKHG2Q9H7P9 1386 aa33.83■■■■□ 3.01
LSM6-202ENST00000502781 BCL9O00512 1426 aa33.82■■■■□ 3
LSM6-202ENST00000502781 ZCRB1Q8TBF4 217 aaKnown RBP33.8■■■■□ 3
LSM6-202ENST00000502781 AEBP1Q8IUX7 1158 aa33.79■■■■□ 3
LSM6-202ENST00000502781 MYBBP1AQ9BQG0 1328 aaKnown RBP33.78■■■■□ 3
LSM6-202ENST00000502781 SULT6B1Q6IMI4 303 aa33.76■■■■□ 3
LSM6-202ENST00000502781 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.76■■■■□ 34e-7■■■□□ 17.4
LSM6-202ENST00000502781 CCDC125Q86Z20 511 aa33.74■■■□□ 2.99
LSM6-202ENST00000502781 SHANK3Q9BYB0 1731 aa33.74■■■□□ 2.99
LSM6-202ENST00000502781 PKD1L3Q7Z443 1732 aa33.73■■■□□ 2.99
LSM6-202ENST00000502781 DDX54Q8TDD1 881 aaKnown RBP33.72■■■□□ 2.99
LSM6-202ENST00000502781 PCDH11XQ9BZA7 1347 aa33.7■■■□□ 2.99
LSM6-202ENST00000502781 PCDH11YQ9BZA8 1340 aa33.7■■■□□ 2.99
LSM6-202ENST00000502781 SPG7Q9UQ90 795 aa33.7■■■□□ 2.98
LSM6-202ENST00000502781 NUDCQ9Y266 331 aa33.7■■■□□ 2.98
LSM6-202ENST00000502781 CYP27B1O15528 508 aa33.69■■■□□ 2.98
LSM6-202ENST00000502781 U2SURPO15042 1029 aaKnown RBP33.68■■■□□ 2.98
LSM6-202ENST00000502781 HMOX1P09601 288 aa33.68■■■□□ 2.98
LSM6-202ENST00000502781 TRIM37O94972 964 aa33.65■■■□□ 2.98
LSM6-202ENST00000502781 AMOTQ4VCS5 1084 aa33.64■■■□□ 2.98
LSM6-202ENST00000502781 PLEKHO1Q53GL0 409 aaPredicted RBP33.63■■■□□ 2.97
LSM6-202ENST00000502781 SBF2Q86WG5 1849 aa33.62■■■□□ 2.97
LSM6-202ENST00000502781 NKX1-1Q15270 411 aaPredicted RBP33.61■■■□□ 2.97
LSM6-202ENST00000502781 BCL11BQ9C0K0 894 aaPredicted RBP33.6■■■□□ 2.97
LSM6-202ENST00000502781 U2AF1L5P0DN76 240 aaPredicted RBP33.6■■■□□ 2.97
LSM6-202ENST00000502781 U2AF1Q01081 240 aaKnown RBP eCLIP33.6■■■□□ 2.97
LSM6-202ENST00000502781 RSPH6AQ9H0K4 717 aa33.6■■■□□ 2.97
LSM6-202ENST00000502781 ANP32CO43423 234 aa33.59■■■□□ 2.97
LSM6-202ENST00000502781 PHKG2P15735 406 aa33.59■■■□□ 2.97
LSM6-202ENST00000502781 IFNL2Q8IZJ0 200 aa33.59■■■□□ 2.97
LSM6-202ENST00000502781 TNS1Q9HBL0 1735 aaKnown RBP33.58■■■□□ 2.97
LSM6-202ENST00000502781 FCHSD2O94868 740 aa33.58■■■□□ 2.97
LSM6-202ENST00000502781 SF3B2Q13435 895 aaKnown RBP33.58■■■□□ 2.97
LSM6-202ENST00000502781 PTF1AQ7RTS3 328 aa33.58■■■□□ 2.97
LSM6-202ENST00000502781 KCNQ2O43526 872 aa33.57■■■□□ 2.96
LSM6-202ENST00000502781 ACSBG1Q96GR2 724 aa33.56■■■□□ 2.96
LSM6-202ENST00000502781 NHSQ6T4R5 1651 aa33.54■■■□□ 2.96
LSM6-202ENST00000502781 ZNF530Q6P9A1 599 aaPredicted RBP33.54■■■□□ 2.96
LSM6-202ENST00000502781 PRKAR2BP31323 418 aa33.53■■■□□ 2.96
LSM6-202ENST00000502781 BAG6P46379 1132 aa33.52■■■□□ 2.96
LSM6-202ENST00000502781 DEFB132Q7Z7B7 95 aa33.52■■■□□ 2.96
LSM6-202ENST00000502781 APBA3O96018 575 aa33.51■■■□□ 2.96
LSM6-202ENST00000502781 MTHFSDQ2M296 383 aaKnown RBP33.51■■■□□ 2.96
LSM6-202ENST00000502781 PRIM1P49642 420 aaKnown RBP33.49■■■□□ 2.95
LSM6-202ENST00000502781 DOT1LQ8TEK3 1739 aa33.49■■■□□ 2.95
LSM6-202ENST00000502781 HSP90AB1P08238 724 aaKnown RBP33.48■■■□□ 2.95
LSM6-202ENST00000502781 PHACTR3Q96KR7 559 aa33.48■■■□□ 2.95
LSM6-202ENST00000502781 C1orf141Q5JVX7 400 aa33.47■■■□□ 2.95
LSM6-202ENST00000502781 PLSCR1O15162 318 aa33.47■■■□□ 2.95
LSM6-202ENST00000502781 AKAP4Q5JQC9 854 aa33.47■■■□□ 2.95
LSM6-202ENST00000502781 DCAF5Q96JK2 942 aa33.47■■■□□ 2.95
LSM6-202ENST00000502781 CAMKK2Q96RR4 588 aa33.47■■■□□ 2.95
LSM6-202ENST00000502781 TOGARAM1Q9Y4F4 1720 aa33.46■■■□□ 2.95
LSM6-202ENST00000502781 EN1Q05925 392 aaPredicted RBP33.46■■■□□ 2.95
LSM6-202ENST00000502781 KDM6AO15550 1401 aaPredicted RBP33.45■■■□□ 2.95
LSM6-202ENST00000502781 CCDC184Q52MB2 194 aa33.45■■■□□ 2.94
LSM6-202ENST00000502781 PLEKHF1Q96S99 279 aa33.45■■■□□ 2.94
LSM6-202ENST00000502781 GAS2L2Q8NHY3 880 aa33.44■■■□□ 2.94
LSM6-202ENST00000502781 KAT6BQ8WYB5 2073 aa33.43■■■□□ 2.94
LSM6-202ENST00000502781 SYTL4Q96C24 671 aaPredicted RBP33.43■■■□□ 2.94
LSM6-202ENST00000502781 BTAF1O14981 1849 aa33.4■■■□□ 2.94
LSM6-202ENST00000502781 ERVV-2B6SEH9 535 aa33.4■■■□□ 2.94
LSM6-202ENST00000502781 EZH2Q15910 746 aaKnown RBP33.39■■■□□ 2.94
LSM6-202ENST00000502781 MPRIPQ6WCQ1 1025 aa33.39■■■□□ 2.94
LSM6-202ENST00000502781 PNNQ9H307 717 aaKnown RBP33.39■■■□□ 2.94
LSM6-202ENST00000502781 RGPD3A6NKT7 1758 aaPredicted RBP33.39■■■□□ 2.94
LSM6-202ENST00000502781 RGPD4Q7Z3J3 1758 aa33.39■■■□□ 2.94
LSM6-202ENST00000502781 WDR43Q15061 677 aaKnown RBP eCLIP33.38■■■□□ 2.93
LSM6-202ENST00000502781 ADAMTS8Q9UP79 889 aa33.37■■■□□ 2.93
LSM6-202ENST00000502781 PIGBQ92521 554 aa33.36■■■□□ 2.93
LSM6-202ENST00000502781 MAP3K5Q99683 1374 aa33.36■■■□□ 2.93
LSM6-202ENST00000502781 ADAMTS7Q9UKP4 1686 aa33.36■■■□□ 2.93
LSM6-202ENST00000502781 ITGB4P16144 1822 aa33.35■■■□□ 2.93
LSM6-202ENST00000502781 PROM2Q8N271 834 aa33.34■■■□□ 2.93
LSM6-202ENST00000502781 GNAT3A8MTJ3 354 aa33.34■■■□□ 2.93
LSM6-202ENST00000502781 RNMTO43148 476 aaKnown RBP33.34■■■□□ 2.93
LSM6-202ENST00000502781 LGR6Q9HBX8 967 aa33.34■■■□□ 2.93
LSM6-202ENST00000502781 TMOD3Q9NYL9 352 aa33.34■■■□□ 2.93
LSM6-202ENST00000502781 MRS2Q9HD23 443 aa33.33■■■□□ 2.93
LSM6-202ENST00000502781 NEFMP07197 916 aa33.32■■■□□ 2.92
LSM6-202ENST00000502781 SCN11AQ9UI33 1791 aa33.31■■■□□ 2.92
LSM6-202ENST00000502781 PNISRQ8TF01 805 aaKnown RBP33.31■■■□□ 2.92
LSM6-202ENST00000502781 MRC1P22897 1456 aa33.3■■■□□ 2.92
LSM6-202ENST00000502781 RREB1Q92766 1687 aa33.3■■■□□ 2.92
LSM6-202ENST00000502781 TXNRD1Q16881 649 aa33.3■■■□□ 2.92
LSM6-202ENST00000502781 IL17REQ8NFR9 667 aa33.3■■■□□ 2.92
LSM6-202ENST00000502781 CABP4P57796 275 aa33.29■■■□□ 2.92
LSM6-202ENST00000502781 MAPK8IP3Q9UPT6 1336 aa33.28■■■□□ 2.92
LSM6-202ENST00000502781 SLC52A2Q9HAB3 445 aa33.28■■■□□ 2.92
LSM6-202ENST00000502781 CEMIPQ8WUJ3 1361 aa33.28■■■□□ 2.92
LSM6-202ENST00000502781 HTATSF1O43719 755 aaKnown RBP33.27■■■□□ 2.92
LSM6-202ENST00000502781 NFE2L2Q16236 605 aa33.27■■■□□ 2.92
LSM6-202ENST00000502781 DIEXFQ68CQ4 756 aaKnown RBP33.26■■■□□ 2.92
LSM6-202ENST00000502781 NFATC2IPQ8NCF5 419 aa33.26■■■□□ 2.92
LSM6-202ENST00000502781 RUNDC1Q96C34 613 aa33.26■■■□□ 2.92
LSM6-202ENST00000502781 SMARCC1Q92922 1105 aaPredicted RBP33.25■■■□□ 2.91
LSM6-202ENST00000502781 ASAP1Q9ULH1 1129 aa33.24■■■□□ 2.91
LSM6-202ENST00000502781 PALLDQ8WX93 1383 aa33.24■■■□□ 2.91
LSM6-202ENST00000502781 CCDC146Q8IYE0 955 aa33.23■■■□□ 2.91
LSM6-202ENST00000502781 ATG3Q9NT62 314 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms