RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 ARHGEF10O15013 1369 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 KIAA0232Q92628 1395 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 ATP10DQ9P241 1426 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 INTS3Q68E01 1043 aaKnown RBP12.33□□□□□ -0.43
CLIP1-204ENST00000501271 POTEDQ86YR6 584 aa12.33□□□□□ -0.43
CLIP1-204ENST00000501271 TTC21AQ8NDW8 1320 aa12.33□□□□□ -0.44
CLIP1-204ENST00000501271 XRN1Q8IZH2 1706 aaKnown RBP12.33□□□□□ -0.44
CLIP1-204ENST00000501271 MARF1Q9Y4F3 1742 aaKnown RBP12.33□□□□□ -0.44
CLIP1-204ENST00000501271 CEP170BQ9Y4F5 1589 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-204ENST00000501271 MSH6P52701 1360 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 FOXO3O43524 673 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 NCOA3Q9Y6Q9 1424 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 SBNO1A3KN83 1393 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 FLT4P35916 1363 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 TBC1D9Q6ZT07 1266 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 HSCBQ8IWL3 235 aa12.32□□□□□ -0.44
CLIP1-204ENST00000501271 KDRP35968 1356 aa12.31□□□□□ -0.44
CLIP1-204ENST00000501271 HAP1P54257 671 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-204ENST00000501271 MTHFSDQ2M296 383 aaKnown RBP12.31□□□□□ -0.44
CLIP1-204ENST00000501271 KIF2CQ99661 725 aa12.31□□□□□ -0.44
CLIP1-204ENST00000501271 MIS18AQ9NYP9 233 aa12.31□□□□□ -0.44
CLIP1-204ENST00000501271 TBX22Q9Y458 520 aa12.31□□□□□ -0.44
CLIP1-204ENST00000501271 GSPT1P15170 499 aaKnown RBP12.3□□□□□ -0.44
CLIP1-204ENST00000501271 NGDNQ8NEJ9 315 aaKnown RBP12.3□□□□□ -0.44
CLIP1-204ENST00000501271 DCTPP1Q9H773 170 aa12.3□□□□□ -0.44
CLIP1-204ENST00000501271 PTPRCP08575 1304 aa12.3□□□□□ -0.44
CLIP1-204ENST00000501271 ANKRD44Q8N8A2 993 aa12.3□□□□□ -0.44
CLIP1-204ENST00000501271 CHMP5Q9NZZ3 219 aa12.3□□□□□ -0.44
CLIP1-204ENST00000501271 LRRC37A3O60309 1634 aa12.3□□□□□ -0.44
CLIP1-204ENST00000501271 RTL1A6NKG5 1358 aa12.3□□□□□ -0.44
CLIP1-204ENST00000501271 CEP85Q6P2H3 762 aa12.29□□□□□ -0.44
CLIP1-204ENST00000501271 PLEKHM2Q8IWE5 1019 aa12.29□□□□□ -0.44
CLIP1-204ENST00000501271 SNX21Q969T3 373 aa12.29□□□□□ -0.44
CLIP1-204ENST00000501271 IGSF1Q8N6C5 1336 aa12.29□□□□□ -0.44
CLIP1-204ENST00000501271 EYA1Q99502 592 aa12.29□□□□□ -0.44
CLIP1-204ENST00000501271 MCM4P33991 863 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 MEIS3Q99687 375 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 FAM208AQ9UK61 1670 aaKnown RBP12.28□□□□□ -0.44
CLIP1-204ENST00000501271 CDC45O75419 566 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 SLC4A2P04920 1241 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 DDIT3P35638 169 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 AMPHP49418 695 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 TSPYL4Q9UJ04 414 aa12.28□□□□□ -0.44
CLIP1-204ENST00000501271 USP54Q70EL1 1684 aa12.27□□□□□ -0.44
CLIP1-204ENST00000501271 C16orf71Q8IYS4 520 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-204ENST00000501271 RTF1Q92541 710 aaKnown RBP12.27□□□□□ -0.44
CLIP1-204ENST00000501271 NWD1Q149M9 1564 aa12.27□□□□□ -0.45
CLIP1-204ENST00000501271 CD2BP2O95400 341 aaKnown RBP12.27□□□□□ -0.45
CLIP1-204ENST00000501271 TTC22Q5TAA0 569 aa12.27□□□□□ -0.45
CLIP1-204ENST00000501271 G2E3Q7L622 706 aa12.27□□□□□ -0.45
CLIP1-204ENST00000501271 RPAP2Q8IXW5 612 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-204ENST00000501271 OTUD7AQ8TE49 926 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-204ENST00000501271 ANKARQ7Z5J8 1434 aa12.26□□□□□ -0.45
CLIP1-204ENST00000501271 THEMISQ8N1K5 641 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-204ENST00000501271 F6X3S4 739 aa12.25□□□□□ -0.45
CLIP1-204ENST00000501271 KCNA6P17658 529 aa12.25□□□□□ -0.45
CLIP1-204ENST00000501271 NLRP6P59044 892 aa12.25□□□□□ -0.45
CLIP1-204ENST00000501271 NUTM2GQ5VZR2 741 aa12.25□□□□□ -0.45
CLIP1-204ENST00000501271 GAS2L2Q8NHY3 880 aa12.25□□□□□ -0.45
CLIP1-204ENST00000501271 RBM42Q9BTD8 480 aaKnown RBP12.25□□□□□ -0.45
CLIP1-204ENST00000501271 SMARCA5O60264 1052 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-204ENST00000501271 LTN1O94822 1766 aa12.24□□□□□ -0.45
CLIP1-204ENST00000501271 APBB1O00213 710 aa12.24□□□□□ -0.45
CLIP1-204ENST00000501271 HSP90AB1P08238 724 aaKnown RBP12.24□□□□□ -0.45
CLIP1-204ENST00000501271 HOXC9P31274 260 aa12.24□□□□□ -0.45
CLIP1-204ENST00000501271 SLC4A10Q6U841 1118 aa12.23□□□□□ -0.45
CLIP1-204ENST00000501271 CACNA1FO60840 1977 aa12.23□□□□□ -0.45
CLIP1-204ENST00000501271 N4BP2Q86UW6 1770 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-204ENST00000501271 PIAS4Q8N2W9 510 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-204ENST00000501271 K7ELQ4 463 aaPredicted RBP12.21□□□□□ -0.45
CLIP1-204ENST00000501271 CCT4P50991 539 aaKnown RBP12.21□□□□□ -0.45
CLIP1-204ENST00000501271 TUBGCP6Q96RT7 1819 aa12.21□□□□□ -0.45
CLIP1-204ENST00000501271 GNAT3A8MTJ3 354 aa12.21□□□□□ -0.46
CLIP1-204ENST00000501271 HTATSF1O43719 755 aaKnown RBP12.21□□□□□ -0.46
CLIP1-204ENST00000501271 SDSP20132 328 aa12.21□□□□□ -0.46
CLIP1-204ENST00000501271 ABTB2Q8N961 1025 aa12.21□□□□□ -0.46
CLIP1-204ENST00000501271 TNPO1Q92973 898 aaKnown RBP12.21□□□□□ -0.46
CLIP1-204ENST00000501271 FOXD4L1Q9NU39 408 aa12.21□□□□□ -0.46
CLIP1-204ENST00000501271 TRAK2O60296 914 aa12.2□□□□□ -0.46
CLIP1-204ENST00000501271 LTV1Q96GA3 475 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-204ENST00000501271 GZF1Q9H116 711 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-204ENST00000501271 CIZ1Q9ULV3 898 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-204ENST00000501271 MAP3K5Q99683 1374 aa12.2□□□□□ -0.46
CLIP1-204ENST00000501271 CHD2O14647 1828 aaKnown RBP12.2□□□□□ -0.46
CLIP1-204ENST00000501271 AK9Q5TCS8 1911 aa12.2□□□□□ -0.46
CLIP1-204ENST00000501271 RAB3GAP1Q15042 981 aa12.2□□□□□ -0.46
CLIP1-204ENST00000501271 STK31Q9BXU1 1019 aa12.2□□□□□ -0.46
CLIP1-204ENST00000501271 SETD1BQ9UPS6 1966 aaKnown RBP12.2□□□□□ -0.46
CLIP1-204ENST00000501271 DDX11L8A8MPP1 907 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 HMMRO75330 724 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 FLIIQ13045 1269 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 IL17REQ8NFR9 667 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 NECTIN2Q92692 538 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 USP26Q9BXU7 913 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 HSP90AA1P07900 732 aaKnown RBP12.19□□□□□ -0.46
CLIP1-204ENST00000501271 USHBP1Q8N6Y0 703 aa12.19□□□□□ -0.46
CLIP1-204ENST00000501271 FKBP5Q13451 457 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-204ENST00000501271 L1TD1Q5T7N2 865 aaKnown RBP12.18□□□□□ -0.46
CLIP1-204ENST00000501271 FSD2A1L4K1 749 aa12.18□□□□□ -0.46
CLIP1-204ENST00000501271 GNAI2P04899 355 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms