RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 OVOS2A0A0J9YW53 1432 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 OVOS2Q6IE36 1432 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 CELF2O95319 508 aaKnown RBP6.51□□□□□ -1.37
USP54-216ENST00000498143 FAM193AP78312 1265 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP54-216ENST00000498143 MIER1Q8N108 512 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 NWD1Q149M9 1564 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 EEA1Q15075 1411 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 C1orf141Q5JVX7 400 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 EP400NLQ6ZTU2 488 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 SPOCK2Q92563 424 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 WDR33Q9C0J8 1336 aaKnown RBP6.51□□□□□ -1.37
USP54-216ENST00000498143 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.51□□□□□ -1.37
USP54-216ENST00000498143 APBB1O00213 710 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 PRKG1Q13976 671 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 C2CD5Q86YS7 1000 aa6.51□□□□□ -1.37
USP54-216ENST00000498143 CC2D1BQ5T0F9 858 aaKnown RBP6.5□□□□□ -1.37
USP54-216ENST00000498143 TAF3Q5VWG9 929 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 TICAM2Q86XR7 235 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 PRAM1Q96QH2 718 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 HOXD11P31277 338 aaPredicted RBP6.5□□□□□ -1.37
USP54-216ENST00000498143 HABP4Q5JVS0 413 aaKnown RBP6.5□□□□□ -1.37
USP54-216ENST00000498143 AGLP35573 1532 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 MLH3Q9UHC1 1453 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 LDHDQ86WU2 507 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 TTC5Q8N0Z6 440 aa6.5□□□□□ -1.37
USP54-216ENST00000498143 ARHGEF12Q9NZN5 1544 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 VEGFBP49765 207 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 KCNQ4P56696 695 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 CEP162Q5TB80 1403 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 SOS2Q07890 1332 aaPredicted RBP6.49□□□□□ -1.37
USP54-216ENST00000498143 PIK3R4Q99570 1358 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 TGFB2P61812 414 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 CNTROBQ8N137 903 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 MAP1SQ66K74 1059 aaPredicted RBP6.49□□□□□ -1.37
USP54-216ENST00000498143 NIM1KQ8IY84 436 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 GPATCH11Q8N954 259 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 CCDC102AQ96A19 550 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 SSR1P43307 286 aaKnown RBP6.49□□□□□ -1.37
USP54-216ENST00000498143 KRI1Q8N9T8 703 aaKnown RBP6.49□□□□□ -1.37
USP54-216ENST00000498143 TRIM17Q9Y577 477 aa6.49□□□□□ -1.37
USP54-216ENST00000498143 NCOA2Q15596 1464 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 KIF3CO14782 793 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 CYP4F22Q6NT55 531 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 CNKSR1Q969H4 720 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 PKN2Q16513 984 aaKnown RBP6.48□□□□□ -1.37
USP54-216ENST00000498143 CHAMP1Q96JM3 812 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 RAB3GAP2Q9H2M9 1393 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 CCDC129Q6ZRS4 1044 aa6.48□□□□□ -1.37
USP54-216ENST00000498143 AXDND1Q5T1B0 1012 aaPredicted RBP6.47□□□□□ -1.37
USP54-216ENST00000498143 CDK19Q9BWU1 502 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 SUPT6HQ7KZ85 1726 aaKnown RBP6.47□□□□□ -1.37
USP54-216ENST00000498143 SPATA31A1Q5TZJ5 1347 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 MAP3K4Q9Y6R4 1608 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 GLTPD2A6NH11 291 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 ZCRB1Q8TBF4 217 aaKnown RBP6.47□□□□□ -1.37
USP54-216ENST00000498143 CRBNQ96SW2 442 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 NOP58Q9Y2X3 529 aaKnown RBP6.47□□□□□ -1.37
USP54-216ENST00000498143 IRS2Q9Y4H2 1338 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 PLEKHG1Q9ULL1 1385 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 NSD3Q9BZ95 1437 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 DISP1Q96F81 1524 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 DPEP1P16444 411 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 CIAPIN1Q6FI81 312 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 RPGRQ92834 1020 aaKnown RBP6.47□□□□□ -1.37
USP54-216ENST00000498143 SPG7Q9UQ90 795 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 NCOA3Q9Y6Q9 1424 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 ABCA5Q8WWZ7 1642 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 SETD1AO15047 1707 aaKnown RBP6.47□□□□□ -1.37
USP54-216ENST00000498143 PHLPP1O60346 1717 aa6.47□□□□□ -1.37
USP54-216ENST00000498143 EVI5O60447 810 aa6.46□□□□□ -1.37
USP54-216ENST00000498143 CHRDL2Q6WN34 429 aa6.46□□□□□ -1.37
USP54-216ENST00000498143 HINFPQ9BQA5 517 aa6.46□□□□□ -1.37
USP54-216ENST00000498143 KIAA0232Q92628 1395 aa6.46□□□□□ -1.37
USP54-216ENST00000498143 YBX3P16989 372 aaKnown RBP eCLIP6.46□□□□□ -1.37
USP54-216ENST00000498143 BARGINQ6ZT62 677 aa6.46□□□□□ -1.37
USP54-216ENST00000498143 CUL9Q8IWT3 2517 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 KIF14Q15058 1648 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 NKTRP30414 1462 aaKnown RBP6.46□□□□□ -1.38
USP54-216ENST00000498143 SETD5Q9C0A6 1442 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 INTS3Q68E01 1043 aaKnown RBP6.46□□□□□ -1.38
USP54-216ENST00000498143 JMYQ8N9B5 988 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 UGGT2Q9NYU1 1516 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 GCP02774 474 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 HOXD10P28358 340 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 UBXN2AP68543 259 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 ZNF710Q8N1W2 664 aa6.46□□□□□ -1.38
USP54-216ENST00000498143 EPHX2P34913 555 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 PDE6BP35913 854 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.45□□□□□ -1.38
USP54-216ENST00000498143 MICALL1Q8N3F8 863 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 RRP9O43818 475 aaKnown RBP6.45□□□□□ -1.38
USP54-216ENST00000498143 MAP2K2P36507 400 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 CABP4P57796 275 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 SLC9C1Q4G0N8 1177 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 ATRNO75882 1429 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 TTC21AQ8NDW8 1320 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 PTCD1O75127 700 aaKnown RBP6.45□□□□□ -1.38
USP54-216ENST00000498143 FOXD4L5Q5VV16 416 aaPredicted RBP6.45□□□□□ -1.38
USP54-216ENST00000498143 FOXD4L4Q8WXT5 416 aaPredicted RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms