RNA–Protein interactions for RNA: ENST00000497960.5

NUP50-219, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 986 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-219ENST00000497960 MEGF6O75095 1541 aa20.97■□□□□ 0.95
NUP50-219ENST00000497960 RREB1Q92766 1687 aa20.96■□□□□ 0.95
NUP50-219ENST00000497960 MAP2P11137 1827 aaKnown RBP20.95■□□□□ 0.94
NUP50-219ENST00000497960 ANKRD26Q9UPS8 1709 aa20.94■□□□□ 0.94
NUP50-219ENST00000497960 RGPD3A6NKT7 1758 aaPredicted RBP20.94■□□□□ 0.94
NUP50-219ENST00000497960 RGPD4Q7Z3J3 1758 aa20.94■□□□□ 0.94
NUP50-219ENST00000497960 NUP188Q5SRE5 1749 aa20.93■□□□□ 0.94
NUP50-219ENST00000497960 TXNRD1Q16881 649 aa20.93■□□□□ 0.94
NUP50-219ENST00000497960 NHSQ6T4R5 1651 aa20.93■□□□□ 0.94
NUP50-219ENST00000497960 PROM2Q8N271 834 aa20.92■□□□□ 0.94
NUP50-219ENST00000497960 SYTL4Q96C24 671 aaPredicted RBP20.91■□□□□ 0.94
NUP50-219ENST00000497960 EYA1Q99502 592 aa20.91■□□□□ 0.94
NUP50-219ENST00000497960 SRCAPQ6ZRS2 3230 aa20.9■□□□□ 0.94
NUP50-219ENST00000497960 PCDH11XQ9BZA7 1347 aa20.9■□□□□ 0.94
NUP50-219ENST00000497960 PCDH11YQ9BZA8 1340 aa20.9■□□□□ 0.94
NUP50-219ENST00000497960 PRIM1P49642 420 aaKnown RBP20.9■□□□□ 0.94
NUP50-219ENST00000497960 AMER1Q5JTC6 1135 aaPredicted RBP20.9■□□□□ 0.94
NUP50-219ENST00000497960 EIF4A2Q14240 407 aaKnown RBP20.89■□□□□ 0.93
NUP50-219ENST00000497960 NCAPD2Q15021 1401 aa20.87■□□□□ 0.93
NUP50-219ENST00000497960 ANO8Q9HCE9 1232 aaPredicted RBP20.87■□□□□ 0.93
NUP50-219ENST00000497960 STK32BQ9NY57 414 aa20.87■□□□□ 0.93
NUP50-219ENST00000497960 SPG7Q9UQ90 795 aa20.86■□□□□ 0.93
NUP50-219ENST00000497960 LRP5O75197 1615 aa20.86■□□□□ 0.93
NUP50-219ENST00000497960 BTAF1O14981 1849 aa20.85■□□□□ 0.93
NUP50-219ENST00000497960 PER1O15534 1290 aaPredicted RBP20.85■□□□□ 0.93
NUP50-219ENST00000497960 SHANK3Q9BYB0 1731 aa20.84■□□□□ 0.93
NUP50-219ENST00000497960 CYP27B1O15528 508 aa20.84■□□□□ 0.93
NUP50-219ENST00000497960 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.84■□□□□ 0.935e-6■□□□□ 10.1
NUP50-219ENST00000497960 CC2D1BQ5T0F9 858 aaKnown RBP20.83■□□□□ 0.93
NUP50-219ENST00000497960 SLC15A2Q16348 729 aa20.82■□□□□ 0.92
NUP50-219ENST00000497960 SLC27A3Q5K4L6 730 aa20.82■□□□□ 0.92
NUP50-219ENST00000497960 IGSF1Q8N6C5 1336 aa20.81■□□□□ 0.92
NUP50-219ENST00000497960 DOT1LQ8TEK3 1739 aa20.81■□□□□ 0.92
NUP50-219ENST00000497960 SPON1Q9HCB6 807 aa20.8■□□□□ 0.92
NUP50-219ENST00000497960 PLEKHG2Q9H7P9 1386 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 NPC1L1Q9UHC9 1359 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 MTHFSP49914 203 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 NKX1-1Q15270 411 aaPredicted RBP20.78■□□□□ 0.92
NUP50-219ENST00000497960 MPRIPQ6WCQ1 1025 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 IFNL2Q8IZJ0 200 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 LRRC4BQ9NT99 713 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 PKD1L3Q7Z443 1732 aa20.78■□□□□ 0.92
NUP50-219ENST00000497960 CNGB1Q14028 1251 aaPredicted RBP20.77■□□□□ 0.92
NUP50-219ENST00000497960 PLEKHO1Q53GL0 409 aaPredicted RBP20.76■□□□□ 0.91
NUP50-219ENST00000497960 PHKG2P15735 406 aa20.75■□□□□ 0.91
NUP50-219ENST00000497960 IL13P35225 146 aa20.75■□□□□ 0.91
NUP50-219ENST00000497960 PPP1R1BQ9UD71 204 aaPredicted RBP20.75■□□□□ 0.91
NUP50-219ENST00000497960 CCNL1Q9UK58 526 aaPredicted RBP20.75■□□□□ 0.91
NUP50-219ENST00000497960 AMOTQ4VCS5 1084 aa20.74■□□□□ 0.91
NUP50-219ENST00000497960 SULT6B1Q6IMI4 303 aa20.74■□□□□ 0.91
NUP50-219ENST00000497960 PDGFDQ9GZP0 370 aaPredicted RBP20.74■□□□□ 0.91
NUP50-219ENST00000497960 ZBTB7AO95365 584 aa20.73■□□□□ 0.91
NUP50-219ENST00000497960 HMGB2P26583 209 aaKnown RBP20.73■□□□□ 0.91
NUP50-219ENST00000497960 KCNQ4P56696 695 aa20.73■□□□□ 0.91
NUP50-219ENST00000497960 ZNF827Q17R98 1081 aa20.73■□□□□ 0.91
NUP50-219ENST00000497960 AEBP1Q8IUX7 1158 aa20.73■□□□□ 0.91
NUP50-219ENST00000497960 SMARCC1Q92922 1105 aaPredicted RBP20.73■□□□□ 0.91
NUP50-219ENST00000497960 HSP90AB1P08238 724 aaKnown RBP20.72■□□□□ 0.91
NUP50-219ENST00000497960 AKT1S1Q96B36 256 aa20.72■□□□□ 0.91
NUP50-219ENST00000497960 PAPPAQ13219 1627 aa20.71■□□□□ 0.91
NUP50-219ENST00000497960 ZNF530Q6P9A1 599 aaPredicted RBP20.71■□□□□ 0.91
NUP50-219ENST00000497960 PIGBQ92521 554 aa20.71■□□□□ 0.91
NUP50-219ENST00000497960 TMOD3Q9NYL9 352 aa20.71■□□□□ 0.91
NUP50-219ENST00000497960 PALLDQ8WX93 1383 aa20.71■□□□□ 0.91
NUP50-219ENST00000497960 DIAPH1O60610 1272 aaKnown RBP20.7■□□□□ 0.9
NUP50-219ENST00000497960 TFCP2L1Q9NZI6 479 aa20.7■□□□□ 0.9
NUP50-219ENST00000497960 CASZ1Q86V15 1759 aa20.69■□□□□ 0.9
NUP50-219ENST00000497960 MTFR1LQ9H019 292 aa20.69■□□□□ 0.9
NUP50-219ENST00000497960 ATF5Q9Y2D1 282 aaPredicted RBP20.69■□□□□ 0.9
NUP50-219ENST00000497960 LY75O60449 1722 aa20.69■□□□□ 0.9
NUP50-219ENST00000497960 KDRP35968 1356 aa20.69■□□□□ 0.9
NUP50-219ENST00000497960 C1orf141Q5JVX7 400 aa20.68■□□□□ 0.9
NUP50-219ENST00000497960 DCAF5Q96JK2 942 aa20.68■□□□□ 0.9
NUP50-219ENST00000497960 TOGARAM1Q9Y4F4 1720 aa20.67■□□□□ 0.9
NUP50-219ENST00000497960 ERVV-2B6SEH9 535 aa20.66■□□□□ 0.9
NUP50-219ENST00000497960 ITGB4P16144 1822 aa20.66■□□□□ 0.9
NUP50-219ENST00000497960 HMOX1P09601 288 aa20.65■□□□□ 0.9
NUP50-219ENST00000497960 SLC16A10Q8TF71 515 aa20.64■□□□□ 0.89
NUP50-219ENST00000497960 PNPLA7Q6ZV29 1317 aa20.63■□□□□ 0.89
NUP50-219ENST00000497960 PTGER2P43116 358 aa20.63■□□□□ 0.89
NUP50-219ENST00000497960 CABP4P57796 275 aa20.63■□□□□ 0.89
NUP50-219ENST00000497960 CFAP53Q96M91 514 aa20.63■□□□□ 0.89
NUP50-219ENST00000497960 ASAP1Q9ULH1 1129 aa20.63■□□□□ 0.89
NUP50-219ENST00000497960 LOC102724428A0A0B4J2F2 783 aa20.62■□□□□ 0.89
NUP50-219ENST00000497960 ZNF316A6NFI3 1004 aaPredicted RBP20.62■□□□□ 0.89
NUP50-219ENST00000497960 U2SURPO15042 1029 aaKnown RBP20.62■□□□□ 0.89
NUP50-219ENST00000497960 SIK1P57059 783 aa20.62■□□□□ 0.89
NUP50-219ENST00000497960 ATG3Q9NT62 314 aa20.61■□□□□ 0.89
NUP50-219ENST00000497960 MSH5O43196 834 aa20.6■□□□□ 0.89
NUP50-219ENST00000497960 AKAP4Q5JQC9 854 aa20.6■□□□□ 0.89
NUP50-219ENST00000497960 FLAD1Q8NFF5 587 aa20.59■□□□□ 0.89
NUP50-219ENST00000497960 AK7Q96M32 723 aa20.59■□□□□ 0.89
NUP50-219ENST00000497960 KDM6AO15550 1401 aaPredicted RBP20.59■□□□□ 0.89
NUP50-219ENST00000497960 POLD1P28340 1107 aa20.58■□□□□ 0.89
NUP50-219ENST00000497960 PPP2R1AP30153 589 aa20.58■□□□□ 0.89
NUP50-219ENST00000497960 ATP6V1AP38606 617 aa20.58■□□□□ 0.89
NUP50-219ENST00000497960 SGIP1Q9BQI5 828 aa20.58■□□□□ 0.89
NUP50-219ENST00000497960 QSER1Q2KHR3 1735 aa20.58■□□□□ 0.88
NUP50-219ENST00000497960 COL3A1P02461 1466 aaPredicted RBP20.57■□□□□ 0.88
NUP50-219ENST00000497960 COL23A1Q86Y22 540 aaPredicted RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms