RNA–Protein interactions for RNA: ENST00000497448.1

TOM1-217, Transcript of target of myb1 membrane trafficking protein, humanhuman

TSL 2

Gene TOM1, Length 438 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1-217ENST00000497448 USP31Q70CQ4 1352 aa15.14■□□□□ 0.01
TOM1-217ENST00000497448 KTN1Q86UP2 1357 aaKnown RBP15.14■□□□□ 0.01
TOM1-217ENST00000497448 APLP1P51693 650 aa15.14■□□□□ 0.01
TOM1-217ENST00000497448 ANKRD24Q8TF21 1146 aa15.14■□□□□ 0.01
TOM1-217ENST00000497448 SYTL4Q96C24 671 aaPredicted RBP15.14■□□□□ 0.01
TOM1-217ENST00000497448 TOGARAM1Q9Y4F4 1720 aa15.14■□□□□ 0.01
TOM1-217ENST00000497448 EVC2Q86UK5 1308 aa15.14■□□□□ 0.01
TOM1-217ENST00000497448 DDX54Q8TDD1 881 aaKnown RBP15.13■□□□□ 0.01
TOM1-217ENST00000497448 CCNL1Q9UK58 526 aaPredicted RBP15.13■□□□□ 0.01
TOM1-217ENST00000497448 DNAJC5GQ8N7S2 189 aa15.12■□□□□ 0.01
TOM1-217ENST00000497448 RGPD2P0DJD1 1756 aa15.11■□□□□ 0.01
TOM1-217ENST00000497448 PRIM1P49642 420 aaKnown RBP15.11■□□□□ 0.01
TOM1-217ENST00000497448 IGSF1Q8N6C5 1336 aa15.11■□□□□ 0.01
TOM1-217ENST00000497448 WWC3Q9ULE0 1092 aa15.1■□□□□ 0.01
TOM1-217ENST00000497448 UBR3Q6ZT12 1888 aa15.09■□□□□ 0.01
TOM1-217ENST00000497448 C4BP0C0L5 1744 aa15.09■□□□□ 0.01
TOM1-217ENST00000497448 CD163L1Q9NR16 1453 aa15.08■□□□□ 0.01
TOM1-217ENST00000497448 MEGF6O75095 1541 aa15.08■□□□□ 0.01
TOM1-217ENST00000497448 COL13A1Q5TAT6 717 aaPredicted RBP15.08■□□□□ 0
TOM1-217ENST00000497448 NME9Q86XW9 330 aa15.08■□□□□ 0
TOM1-217ENST00000497448 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.08■□□□□ 0
TOM1-217ENST00000497448 KIAA1551Q9HCM1 1747 aa15.08■□□□□ 0
TOM1-217ENST00000497448 USP47Q96K76 1375 aa15.08■□□□□ 0
TOM1-217ENST00000497448 SBNO2Q9Y2G9 1366 aa15.08■□□□□ 0
TOM1-217ENST00000497448 CAPN15O75808 1086 aa15.07■□□□□ 0
TOM1-217ENST00000497448 TOMM70O94826 608 aa15.05■□□□□ -0
TOM1-217ENST00000497448 KIF13BQ9NQT8 1826 aa15.05■□□□□ -0
TOM1-217ENST00000497448 PCNTO95613 3336 aa15.04■□□□□ -0
TOM1-217ENST00000497448 FLAD1Q8NFF5 587 aa15.03■□□□□ -0
TOM1-217ENST00000497448 LTV1Q96GA3 475 aaPredicted RBP15.03■□□□□ -0
TOM1-217ENST00000497448 N4BP2Q86UW6 1770 aaPredicted RBP15.03■□□□□ -0
TOM1-217ENST00000497448 AMIGO3Q86WK7 504 aa15.02■□□□□ -0
TOM1-217ENST00000497448 IP6K1Q92551 441 aa15.02■□□□□ -0
TOM1-217ENST00000497448 EDC4Q6P2E9 1401 aaKnown RBP15.01□□□□□ -0.01
TOM1-217ENST00000497448 ITGB4P16144 1822 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 PALLDQ8WX93 1383 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 PKD1L3Q7Z443 1732 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 PRELPP51888 382 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 HTRA3P83110 453 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 JMYQ8N9B5 988 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 ZCRB1Q8TBF4 217 aaKnown RBP15.01□□□□□ -0.01
TOM1-217ENST00000497448 KLRG1Q96E93 195 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 PXDNLA1KZ92 1463 aa15.01□□□□□ -0.01
TOM1-217ENST00000497448 BRCA1P38398 1863 aaKnown RBP15□□□□□ -0.01
TOM1-217ENST00000497448 TNS4Q8IZW8 715 aa15□□□□□ -0.01
TOM1-217ENST00000497448 NMRK2Q9NPI5 230 aa15□□□□□ -0.01
TOM1-217ENST00000497448 MAP2P11137 1827 aaKnown RBP14.99□□□□□ -0.01
TOM1-217ENST00000497448 PHF14O94880 888 aa14.98□□□□□ -0.01
TOM1-217ENST00000497448 AK7Q96M32 723 aa14.98□□□□□ -0.01
TOM1-217ENST00000497448 NSD3Q9BZ95 1437 aa14.98□□□□□ -0.01
TOM1-217ENST00000497448 ROCK2O75116 1388 aaKnown RBP14.98□□□□□ -0.01
TOM1-217ENST00000497448 SMIM5Q71RC9 77 aa14.97□□□□□ -0.01
TOM1-217ENST00000497448 RBM46Q8TBY0 533 aaKnown RBP14.97□□□□□ -0.01
TOM1-217ENST00000497448 A0A1W2PP64 1363 aa14.97□□□□□ -0.01
TOM1-217ENST00000497448 HOXC9P31274 260 aa14.96□□□□□ -0.01
TOM1-217ENST00000497448 TNRC6CQ9HCJ0 1690 aaKnown RBP14.96□□□□□ -0.01
TOM1-217ENST00000497448 MAP3K19Q56UN5 1328 aa14.95□□□□□ -0.02
TOM1-217ENST00000497448 ARFGEF1Q9Y6D6 1849 aa14.95□□□□□ -0.02
TOM1-217ENST00000497448 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.95□□□□□ -0.02
TOM1-217ENST00000497448 C10orf71Q711Q0 1435 aa14.94□□□□□ -0.02
TOM1-217ENST00000497448 HDGFL2Q7Z4V5 671 aaPredicted RBP14.94□□□□□ -0.02
TOM1-217ENST00000497448 KCPQ6ZWJ8 1503 aa14.93□□□□□ -0.02
TOM1-217ENST00000497448 HMGB2P26583 209 aaKnown RBP14.93□□□□□ -0.02
TOM1-217ENST00000497448 SSFA2P28290 1259 aa14.93□□□□□ -0.02
TOM1-217ENST00000497448 BCS1LQ9Y276 419 aa14.93□□□□□ -0.02
TOM1-217ENST00000497448 PLEKHG2Q9H7P9 1386 aa14.93□□□□□ -0.02
TOM1-217ENST00000497448 CGNL1Q0VF96 1302 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 FSTL1Q12841 308 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 MPRIPQ6WCQ1 1025 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 USHBP1Q8N6Y0 703 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 TMC1Q8TDI8 760 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 RTL1A6NKG5 1358 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 PCDH11XQ9BZA7 1347 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 PCDH11YQ9BZA8 1340 aa14.92□□□□□ -0.02
TOM1-217ENST00000497448 C16orf71Q8IYS4 520 aaPredicted RBP14.91□□□□□ -0.02
TOM1-217ENST00000497448 L3MBTL2Q969R5 705 aa14.91□□□□□ -0.02
TOM1-217ENST00000497448 SLC12A5Q9H2X9 1139 aa14.91□□□□□ -0.02
TOM1-217ENST00000497448 C4AP0C0L4 1744 aa14.91□□□□□ -0.02
TOM1-217ENST00000497448 FBLN1P23142 703 aa14.9□□□□□ -0.02
TOM1-217ENST00000497448 AMPHP49418 695 aa14.9□□□□□ -0.02
TOM1-217ENST00000497448 NBPF6Q5VWK0 638 aa14.9□□□□□ -0.02
TOM1-217ENST00000497448 LINC00116Q8NCU8 138 aa14.9□□□□□ -0.02
TOM1-217ENST00000497448 NBPF4Q96M43 638 aa14.9□□□□□ -0.02
TOM1-217ENST00000497448 MMP10P09238 476 aa14.89□□□□□ -0.03
TOM1-217ENST00000497448 ARHGAP27Q6ZUM4 889 aa14.89□□□□□ -0.03
TOM1-217ENST00000497448 RAPGEF4Q8WZA2 1011 aa14.89□□□□□ -0.03
TOM1-217ENST00000497448 SMARCC1Q92922 1105 aaPredicted RBP14.89□□□□□ -0.03
TOM1-217ENST00000497448 TGFB2P61812 414 aa14.88□□□□□ -0.03
TOM1-217ENST00000497448 C9orf131Q5VYM1 1079 aa14.88□□□□□ -0.03
TOM1-217ENST00000497448 TERF2IPQ9NYB0 399 aa14.88□□□□□ -0.03
TOM1-217ENST00000497448 SMG6Q86US8 1419 aaKnown RBP14.88□□□□□ -0.03
TOM1-217ENST00000497448 SBF1O95248 1867 aa14.87□□□□□ -0.03
TOM1-217ENST00000497448 A0A0G2JLW4 131 aa14.87□□□□□ -0.03
TOM1-217ENST00000497448 CYP27B1O15528 508 aa14.87□□□□□ -0.03
TOM1-217ENST00000497448 HSPA1AP0DMV8 641 aaKnown RBP14.87□□□□□ -0.03
TOM1-217ENST00000497448 HSPA1BP0DMV9 641 aaKnown RBP14.87□□□□□ -0.03
TOM1-217ENST00000497448 TATP17735 454 aaPredicted RBP14.87□□□□□ -0.03
TOM1-217ENST00000497448 COG3Q96JB2 828 aa14.87□□□□□ -0.03
TOM1-217ENST00000497448 GNPATO15228 680 aa14.86□□□□□ -0.03
TOM1-217ENST00000497448 FCHSD2O94868 740 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms