RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 UBAP1LF5GYI3 381 aa10.57□□□□□ -0.72
USP54-215ENST00000497106 AEBP1Q8IUX7 1158 aa10.57□□□□□ -0.72
USP54-215ENST00000497106 EXOC6Q8TAG9 804 aa10.57□□□□□ -0.72
USP54-215ENST00000497106 UPF2Q9HAU5 1272 aaKnown RBP10.57□□□□□ -0.72
USP54-215ENST00000497106 CDCA7Q9BWT1 371 aaPredicted RBP10.56□□□□□ -0.72
USP54-215ENST00000497106 PIP4K2BP78356 416 aa10.56□□□□□ -0.72
USP54-215ENST00000497106 A0A0G2JS52 829 aa10.56□□□□□ -0.72
USP54-215ENST00000497106 COL3A1P02461 1466 aaPredicted RBP10.56□□□□□ -0.72
USP54-215ENST00000497106 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.56□□□□□ -0.72
USP54-215ENST00000497106 HMGB2P26583 209 aaKnown RBP10.55□□□□□ -0.72
USP54-215ENST00000497106 MTHFSDQ2M296 383 aaKnown RBP10.55□□□□□ -0.72
USP54-215ENST00000497106 ATF7IPQ6VMQ6 1270 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 TRMT2AQ8IZ69 625 aaKnown RBP10.55□□□□□ -0.72
USP54-215ENST00000497106 RNF123Q5XPI4 1314 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 TCERG1O14776 1098 aaKnown RBP10.55□□□□□ -0.72
USP54-215ENST00000497106 PLIN1O60240 522 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 ARHGAP45Q92619 1136 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 TRIM35Q9UPQ4 493 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 BTBD11A6QL63 1104 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 CABP4P57796 275 aa10.55□□□□□ -0.72
USP54-215ENST00000497106 ELL2O00472 640 aaPredicted RBP10.54□□□□□ -0.72
USP54-215ENST00000497106 MCM10Q7L590 875 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 USHBP1Q8N6Y0 703 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 CLUAP1Q96AJ1 413 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 PHACTR3Q96KR7 559 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 BCL2L13Q9BXK5 485 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 MBIPQ9NS73 344 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 PLEKHG2Q9H7P9 1386 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 PTPRCP08575 1304 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 NALCNQ8IZF0 1738 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 IQSEC2Q5JU85 1478 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 NCAPD2Q15021 1401 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 KIAA0232Q92628 1395 aa10.54□□□□□ -0.72
USP54-215ENST00000497106 PHF23Q9BUL5 403 aaPredicted RBP10.53□□□□□ -0.72
USP54-215ENST00000497106 COG6Q9Y2V7 657 aa10.53□□□□□ -0.72
USP54-215ENST00000497106 ANP32AP39687 249 aaKnown RBP10.53□□□□□ -0.72
USP54-215ENST00000497106 CCT4P50991 539 aaKnown RBP10.53□□□□□ -0.72
USP54-215ENST00000497106 PCDH11XQ9BZA7 1347 aa10.53□□□□□ -0.72
USP54-215ENST00000497106 PCDH11YQ9BZA8 1340 aa10.53□□□□□ -0.72
USP54-215ENST00000497106 BCAR3O75815 825 aa10.52□□□□□ -0.72
USP54-215ENST00000497106 HOXB7P09629 217 aa10.52□□□□□ -0.72
USP54-215ENST00000497106 IL2RBP14784 551 aa10.52□□□□□ -0.72
USP54-215ENST00000497106 CHRNA2Q15822 529 aa10.52□□□□□ -0.72
USP54-215ENST00000497106 HDGFL1Q5TGJ6 251 aa10.52□□□□□ -0.72
USP54-215ENST00000497106 SOS2Q07890 1332 aaPredicted RBP10.52□□□□□ -0.73
USP54-215ENST00000497106 NEXNQ0ZGT2 675 aa10.52□□□□□ -0.73
USP54-215ENST00000497106 MVPQ14764 893 aaKnown RBP10.52□□□□□ -0.73
USP54-215ENST00000497106 NOB1Q9ULX3 412 aaKnown RBP10.52□□□□□ -0.73
USP54-215ENST00000497106 ERBB3P21860 1342 aa10.52□□□□□ -0.73
USP54-215ENST00000497106 ZCRB1Q8TBF4 217 aaKnown RBP10.52□□□□□ -0.73
USP54-215ENST00000497106 KDRP35968 1356 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 FKBP5Q13451 457 aaPredicted RBP10.51□□□□□ -0.73
USP54-215ENST00000497106 DCAF5Q96JK2 942 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 THUMPD2Q9BTF0 503 aaKnown RBP10.51□□□□□ -0.73
USP54-215ENST00000497106 NBPF6Q5VWK0 638 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 CABLES1Q8TDN4 633 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 SSH1Q8WYL5 1049 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 NBPF4Q96M43 638 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 CPDO75976 1380 aa10.51□□□□□ -0.73
USP54-215ENST00000497106 NUTM2BA6NNL0 878 aaPredicted RBP10.5□□□□□ -0.73
USP54-215ENST00000497106 NUTM2EB1AL46 878 aaPredicted RBP10.5□□□□□ -0.73
USP54-215ENST00000497106 CHL1O00533 1208 aa10.5□□□□□ -0.73
USP54-215ENST00000497106 GNAI3P08754 354 aa10.5□□□□□ -0.73
USP54-215ENST00000497106 DCTN1Q14203 1278 aa10.5□□□□□ -0.73
USP54-215ENST00000497106 NUTM2AQ8IVF1 878 aaPredicted RBP10.5□□□□□ -0.73
USP54-215ENST00000497106 EIF2S2P20042 333 aaKnown RBP10.5□□□□□ -0.73
USP54-215ENST00000497106 RNMTO43148 476 aaKnown RBP10.5□□□□□ -0.73
USP54-215ENST00000497106 SLC4A10Q6U841 1118 aa10.5□□□□□ -0.73
USP54-215ENST00000497106 NRKQ7Z2Y5 1582 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 PANK1Q8TE04 598 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 WDR17Q8IZU2 1322 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 FAM83GA6ND36 823 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 EXOC5O00471 708 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 SLC4A2P04920 1241 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 CASC1Q6TDU7 716 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 DDX17Q92841 729 aaKnown RBP10.49□□□□□ -0.73
USP54-215ENST00000497106 CARD10Q9BWT7 1032 aa10.49□□□□□ -0.73
USP54-215ENST00000497106 TEX13AQ9BXU3 409 aaPredicted RBP10.49□□□□□ -0.73
USP54-215ENST00000497106 ABCC6O95255 1503 aa10.48□□□□□ -0.73
USP54-215ENST00000497106 MPRIPQ6WCQ1 1025 aa10.48□□□□□ -0.73
USP54-215ENST00000497106 FMNL2Q96PY5 1086 aa10.48□□□□□ -0.73
USP54-215ENST00000497106 TMOD3Q9NYL9 352 aa10.48□□□□□ -0.73
USP54-215ENST00000497106 SLIT3O75094 1523 aa10.48□□□□□ -0.73
USP54-215ENST00000497106 BRPF1P55201 1214 aaPredicted RBP10.47□□□□□ -0.73
USP54-215ENST00000497106 MAP2P11137 1827 aaKnown RBP10.47□□□□□ -0.73
USP54-215ENST00000497106 VAMP4O75379 141 aa10.47□□□□□ -0.73
USP54-215ENST00000497106 ZNF853P0CG23 659 aa10.47□□□□□ -0.73
USP54-215ENST00000497106 DDX54Q8TDD1 881 aaKnown RBP10.47□□□□□ -0.73
USP54-215ENST00000497106 HYPKQ9NX55 129 aa10.47□□□□□ -0.73
USP54-215ENST00000497106 DBF4Q9UBU7 674 aaPredicted RBP10.47□□□□□ -0.73
USP54-215ENST00000497106 ADAMTS2O95450 1211 aa10.46□□□□□ -0.73
USP54-215ENST00000497106 MRPL50Q8N5N7 158 aaKnown RBP10.46□□□□□ -0.73
USP54-215ENST00000497106 BTG4Q9NY30 223 aa10.46□□□□□ -0.73
USP54-215ENST00000497106 USP35Q9P2H5 1018 aa10.46□□□□□ -0.73
USP54-215ENST00000497106 SHPRHQ149N8 1683 aa10.46□□□□□ -0.73
USP54-215ENST00000497106 OS9Q13438 667 aaPredicted RBP10.46□□□□□ -0.74
USP54-215ENST00000497106 HSP90AB4PQ58FF6 505 aa10.46□□□□□ -0.74
USP54-215ENST00000497106 NGLY1Q96IV0 654 aa10.46□□□□□ -0.74
USP54-215ENST00000497106 SPINK5Q9NQ38 1064 aaPredicted RBP10.46□□□□□ -0.74
USP54-215ENST00000497106 PIK3C2AO00443 1686 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms