RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 NWD1Q149M9 1564 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 PIK3C2AO00443 1686 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 PTPRUQ92729 1446 aa8.97□□□□□ -0.97
USP39-219ENST00000496047 CT47B1P0C2W7 299 aaPredicted RBP8.96□□□□□ -0.98
USP39-219ENST00000496047 LMOD3Q0VAK6 560 aa8.96□□□□□ -0.98
USP39-219ENST00000496047 WWC1Q8IX03 1113 aa8.96□□□□□ -0.98
USP39-219ENST00000496047 SLC26A8Q96RN1 970 aa8.96□□□□□ -0.98
USP39-219ENST00000496047 TSHZ2Q9NRE2 1034 aa8.96□□□□□ -0.98
USP39-219ENST00000496047 PNPLA6Q8IY17 1366 aa8.96□□□□□ -0.98
USP39-219ENST00000496047 RGPD1P0DJD0 1748 aa8.95□□□□□ -0.98
USP39-219ENST00000496047 MS4A1P11836 297 aa8.95□□□□□ -0.98
USP39-219ENST00000496047 OVOS2A0A0J9YW53 1432 aa8.95□□□□□ -0.98
USP39-219ENST00000496047 OVOS2Q6IE36 1432 aa8.95□□□□□ -0.98
USP39-219ENST00000496047 MARF1Q9Y4F3 1742 aaKnown RBP8.94□□□□□ -0.98
USP39-219ENST00000496047 PLEKHG3A1L390 1219 aa8.94□□□□□ -0.98
USP39-219ENST00000496047 PPM1GO15355 546 aaPredicted RBP8.94□□□□□ -0.98
USP39-219ENST00000496047 TOM1O60784 492 aa8.94□□□□□ -0.98
USP39-219ENST00000496047 FCHSD2O94868 740 aa8.94□□□□□ -0.98
USP39-219ENST00000496047 NEUROD2Q15784 382 aa8.94□□□□□ -0.98
USP39-219ENST00000496047 TRMT2AQ8IZ69 625 aaKnown RBP8.94□□□□□ -0.98
USP39-219ENST00000496047 IL16Q14005 1332 aa8.94□□□□□ -0.98
USP39-219ENST00000496047 NPHP4O75161 1426 aaPredicted RBP8.94□□□□□ -0.98
USP39-219ENST00000496047 PIP4K2BP78356 416 aa8.93□□□□□ -0.98
USP39-219ENST00000496047 IRX5P78411 483 aaPredicted RBP8.93□□□□□ -0.98
USP39-219ENST00000496047 AAMPQ13685 434 aa8.93□□□□□ -0.98
USP39-219ENST00000496047 NGDNQ8NEJ9 315 aaKnown RBP8.93□□□□□ -0.98
USP39-219ENST00000496047 ACEP12821 1306 aa8.93□□□□□ -0.98
USP39-219ENST00000496047 TTC21BQ7Z4L5 1316 aa8.93□□□□□ -0.98
USP39-219ENST00000496047 PEAK1Q9H792 1746 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 ADGRL3Q9HAR2 1447 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 PRR36Q9H6K5 1346 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 IFFO2Q5TF58 517 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 NME9Q86XW9 330 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 EXOC6Q8TAG9 804 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 OCEL1Q9H607 264 aa8.92□□□□□ -0.98
USP39-219ENST00000496047 KIF24Q5T7B8 1368 aa8.91□□□□□ -0.98
USP39-219ENST00000496047 TMPOP42166 694 aaKnown RBP8.91□□□□□ -0.98
USP39-219ENST00000496047 CRBNQ96SW2 442 aa8.91□□□□□ -0.98
USP39-219ENST00000496047 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.91□□□□□ -0.98
USP39-219ENST00000496047 POLKQ9UBT6 870 aa8.91□□□□□ -0.98
USP39-219ENST00000496047 RRP7AQ9Y3A4 280 aaKnown RBP8.91□□□□□ -0.98
USP39-219ENST00000496047 PHRF1Q9P1Y6 1649 aaKnown RBP8.91□□□□□ -0.98
USP39-219ENST00000496047 ZNF335Q9H4Z2 1342 aaPredicted RBP8.9□□□□□ -0.98
USP39-219ENST00000496047 SNPHO15079 494 aa8.9□□□□□ -0.98
USP39-219ENST00000496047 RIPK4P57078 832 aa8.9□□□□□ -0.98
USP39-219ENST00000496047 PDE3AQ14432 1141 aa8.9□□□□□ -0.98
USP39-219ENST00000496047 FLT4P35916 1363 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 USP31Q70CQ4 1352 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 KIF16BQ96L93 1317 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 FAM208AQ9UK61 1670 aaKnown RBP8.89□□□□□ -0.99
USP39-219ENST00000496047 TCERG1O14776 1098 aaKnown RBP8.89□□□□□ -0.99
USP39-219ENST00000496047 PRKAR2BP31323 418 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 PSEN1P49768 467 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 CENPQQ7L2Z9 268 aaPredicted RBP8.89□□□□□ -0.99
USP39-219ENST00000496047 ZNF428Q96B54 188 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 PLEKHF1Q96S99 279 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 PCDHB8Q9UN66 801 aa8.89□□□□□ -0.99
USP39-219ENST00000496047 SBNO1A3KN83 1393 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 RTL1A6NKG5 1358 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 ARHGEF10O15013 1369 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 NUTM2FA1L443 756 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 PLIN1O60240 522 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 KCNA6P17658 529 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 NFE2L2Q16236 605 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 POTEAQ6S8J7 498 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 C14orf37Q86TY3 774 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 UPF1Q92900 1129 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP39-219ENST00000496047 TMEM121BQ9BXQ6 578 aaPredicted RBP8.88□□□□□ -0.99
USP39-219ENST00000496047 RSPH6AQ9H0K4 717 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 CHMP4BQ9H444 224 aaKnown RBP8.88□□□□□ -0.99
USP39-219ENST00000496047 EMILIN1Q9Y6C2 1016 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 SSH2Q76I76 1423 aa8.88□□□□□ -0.99
USP39-219ENST00000496047 FANCIQ9NVI1 1328 aa8.87□□□□□ -0.99
USP39-219ENST00000496047 GNAI1P63096 354 aa8.87□□□□□ -0.99
USP39-219ENST00000496047 FTSJ3Q8IY81 847 aaKnown RBP8.87□□□□□ -0.99
USP39-219ENST00000496047 MARVELD3Q96A59 401 aa8.87□□□□□ -0.99
USP39-219ENST00000496047 RBM19Q9Y4C8 960 aaKnown RBP8.87□□□□□ -0.99
USP39-219ENST00000496047 TRPM3Q9HCF6 1732 aaPredicted RBP8.87□□□□□ -0.99
USP39-219ENST00000496047 SRCAPQ6ZRS2 3230 aa8.87□□□□□ -0.99
USP39-219ENST00000496047 RGPD2P0DJD1 1756 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 IPO8O15397 1037 aaKnown RBP8.86□□□□□ -0.99
USP39-219ENST00000496047 IL13P35225 146 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 AMPHP49418 695 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 MMRN1Q13201 1228 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 RRS1Q15050 365 aaKnown RBP8.86□□□□□ -0.99
USP39-219ENST00000496047 ZKSCAN2Q63HK3 967 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 ERICH6Q7L0X2 663 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 PMFBP1Q8TBY8 1022 aa8.86□□□□□ -0.99
USP39-219ENST00000496047 FRAT1Q92837 279 aaPredicted RBP8.86□□□□□ -0.99
USP39-219ENST00000496047 N4BP2Q86UW6 1770 aaPredicted RBP8.86□□□□□ -0.99
USP39-219ENST00000496047 NCKAP5LQ9HCH0 1330 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 LRRC37A3O60309 1634 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 GTPBP6O43824 516 aaPredicted RBP8.85□□□□□ -0.99
USP39-219ENST00000496047 HMOX1P09601 288 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 RARSP54136 660 aaKnown RBP8.85□□□□□ -0.99
USP39-219ENST00000496047 SPNS2Q8IVW8 549 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 SMC4Q9NTJ3 1288 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 IFT57Q9NWB7 429 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 RGPD5Q99666 1765 aa8.85□□□□□ -0.99
USP39-219ENST00000496047 BCAR3O75815 825 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms