RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 DIEXFQ68CQ4 756 aaKnown RBP22.84■■□□□ 1.25
HDAC6-235ENST00000495515 SPG7Q9UQ90 795 aa22.84■■□□□ 1.25
HDAC6-235ENST00000495515 PARP4Q9UKK3 1724 aaKnown RBP22.84■■□□□ 1.25
HDAC6-235ENST00000495515 HMOX1P09601 288 aa22.83■■□□□ 1.25
HDAC6-235ENST00000495515 AEBP1Q8IUX7 1158 aa22.83■■□□□ 1.25
HDAC6-235ENST00000495515 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.83■■□□□ 1.253e-15■□□□□ 8.1
HDAC6-235ENST00000495515 BRWD3Q6RI45 1802 aa22.82■■□□□ 1.24
HDAC6-235ENST00000495515 WNK3Q9BYP7 1800 aa22.82■■□□□ 1.24
HDAC6-235ENST00000495515 AMOTQ4VCS5 1084 aa22.81■■□□□ 1.24
HDAC6-235ENST00000495515 PLEKHO1Q53GL0 409 aaPredicted RBP22.81■■□□□ 1.24
HDAC6-235ENST00000495515 RGPD1P0DJD0 1748 aa22.81■■□□□ 1.24
HDAC6-235ENST00000495515 LRRC37A3O60309 1634 aa22.8■■□□□ 1.24
HDAC6-235ENST00000495515 FAM196AQ6ZSG2 479 aa22.8■■□□□ 1.24
HDAC6-235ENST00000495515 DDX54Q8TDD1 881 aaKnown RBP22.8■■□□□ 1.24
HDAC6-235ENST00000495515 PCDH11XQ9BZA7 1347 aa22.8■■□□□ 1.24
HDAC6-235ENST00000495515 PCDH11YQ9BZA8 1340 aa22.8■■□□□ 1.24
HDAC6-235ENST00000495515 FCHSD2O94868 740 aa22.79■■□□□ 1.24
HDAC6-235ENST00000495515 WDR43Q15061 677 aaKnown RBP eCLIP22.79■■□□□ 1.24
HDAC6-235ENST00000495515 PNNQ9H307 717 aaKnown RBP22.79■■□□□ 1.24
HDAC6-235ENST00000495515 MARCH10Q8NA82 808 aaPredicted RBP22.78■■□□□ 1.24
HDAC6-235ENST00000495515 NEFMP07197 916 aa22.77■■□□□ 1.24
HDAC6-235ENST00000495515 MRS2Q9HD23 443 aa22.76■■□□□ 1.23
HDAC6-235ENST00000495515 PRKAR2BP31323 418 aa22.75■■□□□ 1.23
HDAC6-235ENST00000495515 FAM182BQ5T319 152 aa22.75■■□□□ 1.23
HDAC6-235ENST00000495515 RSPH6AQ9H0K4 717 aa22.75■■□□□ 1.23
HDAC6-235ENST00000495515 IFNL2Q8IZJ0 200 aa22.74■■□□□ 1.23
HDAC6-235ENST00000495515 BCL9O00512 1426 aa22.73■■□□□ 1.23
HDAC6-235ENST00000495515 C1orf141Q5JVX7 400 aa22.72■■□□□ 1.23
HDAC6-235ENST00000495515 ZNF530Q6P9A1 599 aaPredicted RBP22.72■■□□□ 1.23
HDAC6-235ENST00000495515 CYP27B1O15528 508 aa22.71■■□□□ 1.23
HDAC6-235ENST00000495515 HSP90AB1P08238 724 aaKnown RBP22.71■■□□□ 1.23
HDAC6-235ENST00000495515 GAS2L2Q8NHY3 880 aa22.71■■□□□ 1.23
HDAC6-235ENST00000495515 PHKG2P15735 406 aa22.7■■□□□ 1.22
HDAC6-235ENST00000495515 CCDC125Q86Z20 511 aa22.7■■□□□ 1.22
HDAC6-235ENST00000495515 PKD1L3Q7Z443 1732 aa22.7■■□□□ 1.22
HDAC6-235ENST00000495515 MAPK8IP3Q9UPT6 1336 aa22.69■■□□□ 1.22
HDAC6-235ENST00000495515 SF3B2Q13435 895 aaKnown RBP22.68■■□□□ 1.22
HDAC6-235ENST00000495515 NKX1-1Q15270 411 aaPredicted RBP22.68■■□□□ 1.22
HDAC6-235ENST00000495515 MTHFSDQ2M296 383 aaKnown RBP22.68■■□□□ 1.22
HDAC6-235ENST00000495515 CCDC184Q52MB2 194 aa22.68■■□□□ 1.22
HDAC6-235ENST00000495515 CCER2I3L3R5 266 aa22.67■■□□□ 1.22
HDAC6-235ENST00000495515 AKAP4Q5JQC9 854 aa22.67■■□□□ 1.22
HDAC6-235ENST00000495515 ADAMTS8Q9UP79 889 aa22.67■■□□□ 1.22
HDAC6-235ENST00000495515 PHACTR3Q96KR7 559 aa22.66■■□□□ 1.22
HDAC6-235ENST00000495515 EP400Q96L91 3159 aa22.66■■□□□ 1.22
HDAC6-235ENST00000495515 TRIM37O94972 964 aa22.65■■□□□ 1.22
HDAC6-235ENST00000495515 PNISRQ8TF01 805 aaKnown RBP22.65■■□□□ 1.22
HDAC6-235ENST00000495515 DCAF5Q96JK2 942 aa22.65■■□□□ 1.22
HDAC6-235ENST00000495515 PLEKHF1Q96S99 279 aa22.65■■□□□ 1.22
HDAC6-235ENST00000495515 BCL11BQ9C0K0 894 aaPredicted RBP22.64■■□□□ 1.21
HDAC6-235ENST00000495515 SHANK3Q9BYB0 1731 aa22.63■■□□□ 1.21
HDAC6-235ENST00000495515 RUNDC1Q96C34 613 aa22.63■■□□□ 1.21
HDAC6-235ENST00000495515 ACSBG1Q96GR2 724 aa22.63■■□□□ 1.21
HDAC6-235ENST00000495515 SYTL4Q96C24 671 aaPredicted RBP22.62■■□□□ 1.21
HDAC6-235ENST00000495515 GNAT3A8MTJ3 354 aa22.61■■□□□ 1.21
HDAC6-235ENST00000495515 PRIM1P49642 420 aaKnown RBP22.6■■□□□ 1.21
HDAC6-235ENST00000495515 MPRIPQ6WCQ1 1025 aa22.6■■□□□ 1.21
HDAC6-235ENST00000495515 MIER1Q8N108 512 aa22.6■■□□□ 1.21
HDAC6-235ENST00000495515 MAP3K5Q99683 1374 aa22.6■■□□□ 1.21
HDAC6-235ENST00000495515 ERVV-2B6SEH9 535 aa22.59■■□□□ 1.21
HDAC6-235ENST00000495515 NFE2L2Q16236 605 aa22.59■■□□□ 1.21
HDAC6-235ENST00000495515 CCDC146Q8IYE0 955 aa22.59■■□□□ 1.21
HDAC6-235ENST00000495515 RTF1Q92541 710 aaKnown RBP22.59■■□□□ 1.21
HDAC6-235ENST00000495515 KCNQ2O43526 872 aa22.58■■□□□ 1.21
HDAC6-235ENST00000495515 BAG6P46379 1132 aa22.58■■□□□ 1.21
HDAC6-235ENST00000495515 HTATSF1O43719 755 aaKnown RBP22.57■■□□□ 1.2
HDAC6-235ENST00000495515 APBA3O96018 575 aa22.57■■□□□ 1.2
HDAC6-235ENST00000495515 TMOD3Q9NYL9 352 aa22.57■■□□□ 1.2
HDAC6-235ENST00000495515 CABP4P57796 275 aa22.56■■□□□ 1.2
HDAC6-235ENST00000495515 FAM9BQ8IZU0 186 aa22.56■■□□□ 1.2
HDAC6-235ENST00000495515 RNMTO43148 476 aaKnown RBP22.55■■□□□ 1.2
HDAC6-235ENST00000495515 KDM6AO15550 1401 aaPredicted RBP22.55■■□□□ 1.2
HDAC6-235ENST00000495515 LMOD3Q0VAK6 560 aa22.54■■□□□ 1.2
HDAC6-235ENST00000495515 NHSQ6T4R5 1651 aa22.54■■□□□ 1.2
HDAC6-235ENST00000495515 TMPOP42166 694 aaKnown RBP22.53■■□□□ 1.2
HDAC6-235ENST00000495515 RIPK4P57078 832 aa22.53■■□□□ 1.2
HDAC6-235ENST00000495515 LGR6Q9HBX8 967 aa22.53■■□□□ 1.2
HDAC6-235ENST00000495515 DOT1LQ8TEK3 1739 aa22.52■■□□□ 1.2
HDAC6-235ENST00000495515 PLSCR1O15162 318 aa22.52■■□□□ 1.2
HDAC6-235ENST00000495515 TEFQ10587 303 aa22.52■■□□□ 1.2
HDAC6-235ENST00000495515 PTF1AQ7RTS3 328 aa22.52■■□□□ 1.2
HDAC6-235ENST00000495515 IL17REQ8NFR9 667 aa22.51■■□□□ 1.19
HDAC6-235ENST00000495515 PIGBQ92521 554 aa22.51■■□□□ 1.19
HDAC6-235ENST00000495515 SLC52A2Q9HAB3 445 aa22.51■■□□□ 1.19
HDAC6-235ENST00000495515 SBF2Q86WG5 1849 aa22.5■■□□□ 1.19
HDAC6-235ENST00000495515 NFATC2IPQ8NCF5 419 aa22.5■■□□□ 1.19
HDAC6-235ENST00000495515 SMARCC1Q92922 1105 aaPredicted RBP22.5■■□□□ 1.19
HDAC6-235ENST00000495515 TNS1Q9HBL0 1735 aaKnown RBP22.5■■□□□ 1.19
HDAC6-235ENST00000495515 APAF1O14727 1248 aa22.49■■□□□ 1.19
HDAC6-235ENST00000495515 NEUROD2Q15784 382 aa22.49■■□□□ 1.19
HDAC6-235ENST00000495515 EN1Q05925 392 aaPredicted RBP22.48■■□□□ 1.19
HDAC6-235ENST00000495515 MCM10Q7L590 875 aa22.48■■□□□ 1.19
HDAC6-235ENST00000495515 DEFB132Q7Z7B7 95 aa22.48■■□□□ 1.19
HDAC6-235ENST00000495515 RRP7AQ9Y3A4 280 aaKnown RBP22.48■■□□□ 1.19
HDAC6-235ENST00000495515 CEMIPQ8WUJ3 1361 aa22.48■■□□□ 1.19
HDAC6-235ENST00000495515 KAT6BQ8WYB5 2073 aa22.48■■□□□ 1.19
HDAC6-235ENST00000495515 TOGARAM1Q9Y4F4 1720 aa22.47■■□□□ 1.19
HDAC6-235ENST00000495515 HMGB2P26583 209 aaKnown RBP22.45■■□□□ 1.18
HDAC6-235ENST00000495515 DCTN1Q14203 1278 aa22.45■■□□□ 1.18
HDAC6-235ENST00000495515 CAMKK2Q96RR4 588 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 195.7 ms