RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 RBM27Q9P2N5 1060 aaKnown RBP11.83□□□□□ -0.52
SYNE1-230ENST00000495090 ATP10DQ9P241 1426 aa11.83□□□□□ -0.52
SYNE1-230ENST00000495090 RPAP2Q8IXW5 612 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-230ENST00000495090 ANKRD44Q8N8A2 993 aa11.82□□□□□ -0.52
SYNE1-230ENST00000495090 TSPY26PQ9H489 355 aa11.82□□□□□ -0.52
SYNE1-230ENST00000495090 PTPRMP28827 1452 aa11.82□□□□□ -0.52
SYNE1-230ENST00000495090 CPSF1Q10570 1443 aaKnown RBP11.82□□□□□ -0.52
SYNE1-230ENST00000495090 BRD1O95696 1058 aa11.82□□□□□ -0.52
SYNE1-230ENST00000495090 PRKAR2BP31323 418 aa11.82□□□□□ -0.52
SYNE1-230ENST00000495090 LMOD3Q0VAK6 560 aa11.82□□□□□ -0.52
SYNE1-230ENST00000495090 INTS4Q96HW7 963 aaKnown RBP11.82□□□□□ -0.52
SYNE1-230ENST00000495090 ERC2O15083 957 aa11.81□□□□□ -0.52
SYNE1-230ENST00000495090 SDSP20132 328 aa11.81□□□□□ -0.52
SYNE1-230ENST00000495090 CUL4AQ13619 759 aa11.81□□□□□ -0.52
SYNE1-230ENST00000495090 TWISTNBQ3B726 338 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-230ENST00000495090 TSPYL6Q8N831 410 aa11.81□□□□□ -0.52
SYNE1-230ENST00000495090 HDGFL2Q7Z4V5 671 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-230ENST00000495090 PIBF1Q8WXW3 757 aa11.8□□□□□ -0.52
SYNE1-230ENST00000495090 IL17RAQ96F46 866 aa11.8□□□□□ -0.52
SYNE1-230ENST00000495090 MBIPQ9NS73 344 aa11.8□□□□□ -0.52
SYNE1-230ENST00000495090 HAP1P54257 671 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-230ENST00000495090 SRPK2P78362 688 aaKnown RBP11.8□□□□□ -0.52
SYNE1-230ENST00000495090 DMTNQ08495 405 aa11.8□□□□□ -0.52
SYNE1-230ENST00000495090 OSBPL3Q9H4L5 887 aa11.8□□□□□ -0.52
SYNE1-230ENST00000495090 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.79□□□□□ -0.52
SYNE1-230ENST00000495090 MLH3Q9UHC1 1453 aa11.79□□□□□ -0.52
SYNE1-230ENST00000495090 PTMAP06454 111 aaKnown RBP11.78□□□□□ -0.52
SYNE1-230ENST00000495090 ANAPC15P60006 121 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 TMX3Q96JJ7 454 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 NSFL1CQ9UNZ2 370 aaKnown RBP11.78□□□□□ -0.52
SYNE1-230ENST00000495090 CDK12Q9NYV4 1490 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-230ENST00000495090 ATP7BP35670 1465 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 CEP85Q6P2H3 762 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 SPTLC3Q9NUV7 552 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 RGS12O14924 1447 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 SSH2Q76I76 1423 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 RIMS2Q9UQ26 1411 aa11.78□□□□□ -0.52
SYNE1-230ENST00000495090 SIGLEC1Q9BZZ2 1709 aa11.77□□□□□ -0.52
SYNE1-230ENST00000495090 EPB41L2O43491 1005 aaKnown RBP11.77□□□□□ -0.53
SYNE1-230ENST00000495090 TMEM87AQ8NBN3 555 aa11.77□□□□□ -0.53
SYNE1-230ENST00000495090 YTHDC2Q9H6S0 1430 aaKnown RBP11.77□□□□□ -0.53
SYNE1-230ENST00000495090 RTL1A6NKG5 1358 aa11.77□□□□□ -0.53
SYNE1-230ENST00000495090 ARHGEF40Q8TER5 1519 aa11.77□□□□□ -0.53
SYNE1-230ENST00000495090 LETM1O95202 739 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-230ENST00000495090 C16orf71Q8IYS4 520 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-230ENST00000495090 PHACTR3Q96KR7 559 aa11.76□□□□□ -0.53
SYNE1-230ENST00000495090 GTPBP4Q9BZE4 634 aaKnown RBP11.76□□□□□ -0.53
SYNE1-230ENST00000495090 POLKQ9UBT6 870 aa11.76□□□□□ -0.53
SYNE1-230ENST00000495090 ZSCAN20P17040 1043 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-230ENST00000495090 C8orf58Q8NAV2 365 aa11.76□□□□□ -0.53
SYNE1-230ENST00000495090 RNF214Q8ND24 703 aa11.76□□□□□ -0.53
SYNE1-230ENST00000495090 PTPRCP08575 1304 aa11.75□□□□□ -0.53
SYNE1-230ENST00000495090 MCCP23508 829 aa11.75□□□□□ -0.53
SYNE1-230ENST00000495090 FKBP5Q13451 457 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-230ENST00000495090 NOLC1Q14978 699 aaKnown RBP eCLIP11.75□□□□□ -0.53
SYNE1-230ENST00000495090 POGZQ7Z3K3 1410 aa11.75□□□□□ -0.53
SYNE1-230ENST00000495090 TUBGCP6Q96RT7 1819 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 DLG5Q8TDM6 1919 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 HMMRO75330 724 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 NEK4P51957 841 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 OTUD7AQ8TE49 926 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-230ENST00000495090 THUMPD2Q9BTF0 503 aaKnown RBP11.74□□□□□ -0.53
SYNE1-230ENST00000495090 AATKQ6ZMQ8 1374 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 KIAA0232Q92628 1395 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 IL13P35225 146 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 ZNF710Q8N1W2 664 aa11.74□□□□□ -0.53
SYNE1-230ENST00000495090 WDR33Q9C0J8 1336 aaKnown RBP11.73□□□□□ -0.53
SYNE1-230ENST00000495090 KIF20AO95235 890 aa11.73□□□□□ -0.53
SYNE1-230ENST00000495090 DNTTIP2Q5QJE6 756 aaKnown RBP11.73□□□□□ -0.53
SYNE1-230ENST00000495090 CCDC183Q5T5S1 534 aa11.73□□□□□ -0.53
SYNE1-230ENST00000495090 KIF3AQ9Y496 699 aa11.73□□□□□ -0.53
SYNE1-230ENST00000495090 CFAP65Q6ZU64 1925 aaKnown RBP11.73□□□□□ -0.53
SYNE1-230ENST00000495090 MAP2P11137 1827 aaKnown RBP11.73□□□□□ -0.53
SYNE1-230ENST00000495090 MSH6P52701 1360 aa11.72□□□□□ -0.53
SYNE1-230ENST00000495090 TPM3P06753 285 aa11.72□□□□□ -0.53
SYNE1-230ENST00000495090 PDE1AP54750 535 aa11.72□□□□□ -0.53
SYNE1-230ENST00000495090 DLC1Q96QB1 1528 aa11.72□□□□□ -0.53
SYNE1-230ENST00000495090 ELL2O00472 640 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-230ENST00000495090 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
SYNE1-230ENST00000495090 SALL3Q9BXA9 1300 aa11.71□□□□□ -0.53
SYNE1-230ENST00000495090 SAFB2Q14151 953 aaKnown RBP eCLIP11.71□□□□□ -0.53
SYNE1-230ENST00000495090 CHAMP1Q96JM3 812 aa11.71□□□□□ -0.53
SYNE1-230ENST00000495090 PRAM1Q96QH2 718 aa11.71□□□□□ -0.53
SYNE1-230ENST00000495090 DIAPH3Q9NSV4 1193 aa11.71□□□□□ -0.53
SYNE1-230ENST00000495090 SLC52A1Q9NWF4 448 aa11.71□□□□□ -0.53
SYNE1-230ENST00000495090 RPAP1Q9BWH6 1393 aaPredicted RBP11.71□□□□□ -0.54
SYNE1-230ENST00000495090 EDC4Q6P2E9 1401 aaKnown RBP11.7□□□□□ -0.54
SYNE1-230ENST00000495090 HMOX1P09601 288 aa11.7□□□□□ -0.54
SYNE1-230ENST00000495090 MINK1Q8N4C8 1332 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-230ENST00000495090 TMEM131LA2VDJ0 1609 aa11.7□□□□□ -0.54
SYNE1-230ENST00000495090 SMARCA5O60264 1052 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-230ENST00000495090 ADCY5O95622 1261 aa11.7□□□□□ -0.54
SYNE1-230ENST00000495090 MX1P20591 662 aa11.7□□□□□ -0.54
SYNE1-230ENST00000495090 USP48Q86UV5 1035 aa11.7□□□□□ -0.54
SYNE1-230ENST00000495090 CDK19Q9BWU1 502 aa11.7□□□□□ -0.54
SYNE1-230ENST00000495090 NRKQ7Z2Y5 1582 aa11.69□□□□□ -0.54
SYNE1-230ENST00000495090 KDM4AO75164 1064 aa11.69□□□□□ -0.54
SYNE1-230ENST00000495090 GGT6Q6P531 493 aa11.69□□□□□ -0.54
SYNE1-230ENST00000495090 CABP1Q9NZU7 370 aa11.69□□□□□ -0.54
SYNE1-230ENST00000495090 USP25Q9UHP3 1055 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms