RNA–Protein interactions for RNA: ENST00000494610.1

CSNK1E-212, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-212ENST00000494610 IP6K1Q92551 441 aa16.57■□□□□ 0.24
CSNK1E-212ENST00000494610 SHANK3Q9BYB0 1731 aa16.56■□□□□ 0.24
CSNK1E-212ENST00000494610 EDC4Q6P2E9 1401 aaKnown RBP16.56■□□□□ 0.24
CSNK1E-212ENST00000494610 NSD2O96028 1365 aa16.56■□□□□ 0.24
CSNK1E-212ENST00000494610 TFCP2L1Q9NZI6 479 aa16.56■□□□□ 0.24
CSNK1E-212ENST00000494610 MAP3K19Q56UN5 1328 aa16.55■□□□□ 0.24
CSNK1E-212ENST00000494610 USHBP1Q8N6Y0 703 aa16.55■□□□□ 0.24
CSNK1E-212ENST00000494610 FAM208AQ9UK61 1670 aaKnown RBP16.55■□□□□ 0.24
CSNK1E-212ENST00000494610 COL24A1Q17RW2 1714 aa16.54■□□□□ 0.24
CSNK1E-212ENST00000494610 QSER1Q2KHR3 1735 aa16.54■□□□□ 0.24
CSNK1E-212ENST00000494610 YBX3P16989 372 aaKnown RBP eCLIP16.54■□□□□ 0.24
CSNK1E-212ENST00000494610 MSL1Q68DK7 614 aa16.54■□□□□ 0.24
CSNK1E-212ENST00000494610 MEGF6O75095 1541 aa16.54■□□□□ 0.24
CSNK1E-212ENST00000494610 TONSLQ96HA7 1378 aa16.53■□□□□ 0.24
CSNK1E-212ENST00000494610 POLD1P28340 1107 aa16.53■□□□□ 0.24
CSNK1E-212ENST00000494610 HOXC9P31274 260 aa16.53■□□□□ 0.24
CSNK1E-212ENST00000494610 SLC27A3Q5K4L6 730 aa16.53■□□□□ 0.24
CSNK1E-212ENST00000494610 LY75O60449 1722 aa16.53■□□□□ 0.24
CSNK1E-212ENST00000494610 MSH5O43196 834 aa16.52■□□□□ 0.24
CSNK1E-212ENST00000494610 COL23A1Q86Y22 540 aaPredicted RBP16.52■□□□□ 0.24
CSNK1E-212ENST00000494610 TERF2IPQ9NYB0 399 aa16.52■□□□□ 0.24
CSNK1E-212ENST00000494610 ANKRD36BQ8N2N9 1353 aa16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 RRS1Q15050 365 aaKnown RBP16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 NBPF6Q5VWK0 638 aa16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 SMIM5Q71RC9 77 aa16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 ZCRB1Q8TBF4 217 aaKnown RBP16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 SLC16A10Q8TF71 515 aa16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 NBPF4Q96M43 638 aa16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 CCNL1Q9UK58 526 aaPredicted RBP16.51■□□□□ 0.23
CSNK1E-212ENST00000494610 AMPHP49418 695 aa16.5■□□□□ 0.23
CSNK1E-212ENST00000494610 GIGYF1O75420 1035 aaPredicted RBP16.49■□□□□ 0.23
CSNK1E-212ENST00000494610 COG3Q96JB2 828 aa16.49■□□□□ 0.23
CSNK1E-212ENST00000494610 TESK2Q96S53 571 aa16.49■□□□□ 0.23
CSNK1E-212ENST00000494610 ST20-MTHFSA0A0A6YYL1 179 aa16.48■□□□□ 0.23
CSNK1E-212ENST00000494610 WWC3Q9ULE0 1092 aa16.48■□□□□ 0.23
CSNK1E-212ENST00000494610 AMIGO3Q86WK7 504 aa16.47■□□□□ 0.23
CSNK1E-212ENST00000494610 GGNBP2Q9H3C7 697 aa16.47■□□□□ 0.23
CSNK1E-212ENST00000494610 HSP90AB2PQ58FF8 381 aa16.44■□□□□ 0.22
CSNK1E-212ENST00000494610 USP47Q96K76 1375 aa16.43■□□□□ 0.22
CSNK1E-212ENST00000494610 FYB1O15117 783 aa16.43■□□□□ 0.22
CSNK1E-212ENST00000494610 C5P01031 1676 aa16.43■□□□□ 0.22
CSNK1E-212ENST00000494610 MPRIPQ6WCQ1 1025 aa16.42■□□□□ 0.22
CSNK1E-212ENST00000494610 TAF1LQ8IZX4 1826 aa16.41■□□□□ 0.22
CSNK1E-212ENST00000494610 ZNF526Q8TF50 670 aaPredicted RBP16.41■□□□□ 0.22
CSNK1E-212ENST00000494610 PUS7Q96PZ0 661 aaKnown RBP16.41■□□□□ 0.22
CSNK1E-212ENST00000494610 ATP10DQ9P241 1426 aa16.41■□□□□ 0.22
CSNK1E-212ENST00000494610 TOGARAM1Q9Y4F4 1720 aa16.41■□□□□ 0.22
CSNK1E-212ENST00000494610 CYP27B1O15528 508 aa16.4■□□□□ 0.22
CSNK1E-212ENST00000494610 PHF14O94880 888 aa16.39■□□□□ 0.21
CSNK1E-212ENST00000494610 RAPGEF4Q8WZA2 1011 aa16.39■□□□□ 0.21
CSNK1E-212ENST00000494610 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
CSNK1E-212ENST00000494610 GRIN3BO60391 1043 aa16.38■□□□□ 0.21
CSNK1E-212ENST00000494610 TATP17735 454 aaPredicted RBP16.38■□□□□ 0.21
CSNK1E-212ENST00000494610 ITGB4P16144 1822 aa16.38■□□□□ 0.21
CSNK1E-212ENST00000494610 RTL1A6NKG5 1358 aa16.37■□□□□ 0.21
CSNK1E-212ENST00000494610 EMILIN1Q9Y6C2 1016 aa16.36■□□□□ 0.21
CSNK1E-212ENST00000494610 C4BP0C0L5 1744 aa16.36■□□□□ 0.21
CSNK1E-212ENST00000494610 PIGBQ92521 554 aa16.35■□□□□ 0.21
CSNK1E-212ENST00000494610 UBR3Q6ZT12 1888 aa16.34■□□□□ 0.21
CSNK1E-212ENST00000494610 IFFO2Q5TF58 517 aa16.34■□□□□ 0.21
CSNK1E-212ENST00000494610 CARD14Q9BXL6 1004 aa16.34■□□□□ 0.21
CSNK1E-212ENST00000494610 CD2APQ9Y5K6 639 aa16.34■□□□□ 0.21
CSNK1E-212ENST00000494610 PCDH11XQ9BZA7 1347 aa16.34■□□□□ 0.21
CSNK1E-212ENST00000494610 PCDH11YQ9BZA8 1340 aa16.34■□□□□ 0.21
CSNK1E-212ENST00000494610 KIF20BQ96Q89 1820 aa16.33■□□□□ 0.21
CSNK1E-212ENST00000494610 LINC00116Q8NCU8 138 aa16.33■□□□□ 0.2
CSNK1E-212ENST00000494610 AK7Q96M32 723 aa16.33■□□□□ 0.2
CSNK1E-212ENST00000494610 IGSF1Q8N6C5 1336 aa16.33■□□□□ 0.2
CSNK1E-212ENST00000494610 INSRP06213 1382 aa16.33■□□□□ 0.2
CSNK1E-212ENST00000494610 SMG6Q86US8 1419 aaKnown RBP16.33■□□□□ 0.2
CSNK1E-212ENST00000494610 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.32■□□□□ 0.2
CSNK1E-212ENST00000494610 PPM1GO15355 546 aaPredicted RBP16.32■□□□□ 0.2
CSNK1E-212ENST00000494610 ADCY9O60503 1353 aa16.32■□□□□ 0.2
CSNK1E-212ENST00000494610 CGNL1Q0VF96 1302 aa16.32■□□□□ 0.2
CSNK1E-212ENST00000494610 GPBP1L1Q9HC44 474 aaPredicted RBP16.32■□□□□ 0.2
CSNK1E-212ENST00000494610 MAP2P11137 1827 aaKnown RBP16.31■□□□□ 0.2
CSNK1E-212ENST00000494610 ITPK1Q13572 414 aa16.31■□□□□ 0.2
CSNK1E-212ENST00000494610 FLT4P35916 1363 aa16.3■□□□□ 0.2
CSNK1E-212ENST00000494610 ASAP1Q9ULH1 1129 aa16.3■□□□□ 0.2
CSNK1E-212ENST00000494610 PKD1L3Q7Z443 1732 aa16.3■□□□□ 0.2
CSNK1E-212ENST00000494610 TMF1P82094 1093 aa16.29■□□□□ 0.2
CSNK1E-212ENST00000494610 FLAD1Q8NFF5 587 aa16.29■□□□□ 0.2
CSNK1E-212ENST00000494610 LOC102724428A0A0B4J2F2 783 aa16.27■□□□□ 0.2
CSNK1E-212ENST00000494610 SIK1P57059 783 aa16.27■□□□□ 0.2
CSNK1E-212ENST00000494610 EYA1Q99502 592 aa16.27■□□□□ 0.2
CSNK1E-212ENST00000494610 NSD3Q9BZ95 1437 aa16.27■□□□□ 0.19
CSNK1E-212ENST00000494610 GNPATO15228 680 aa16.26■□□□□ 0.19
CSNK1E-212ENST00000494610 HSPA6P17066 643 aa16.26■□□□□ 0.19
CSNK1E-212ENST00000494610 SMARCC1Q92922 1105 aaPredicted RBP16.26■□□□□ 0.19
CSNK1E-212ENST00000494610 NKX1-1Q15270 411 aaPredicted RBP16.25■□□□□ 0.19
CSNK1E-212ENST00000494610 ATG3Q9NT62 314 aa16.25■□□□□ 0.19
CSNK1E-212ENST00000494610 N4BP2Q86UW6 1770 aaPredicted RBP16.25■□□□□ 0.19
CSNK1E-212ENST00000494610 KIF3CO14782 793 aa16.24■□□□□ 0.19
CSNK1E-212ENST00000494610 MMP10P09238 476 aa16.24■□□□□ 0.19
CSNK1E-212ENST00000494610 ATP6V1AP38606 617 aa16.24■□□□□ 0.19
CSNK1E-212ENST00000494610 SLC4A9Q96Q91 983 aa16.24■□□□□ 0.19
CSNK1E-212ENST00000494610 NCAPD2Q15021 1401 aa16.24■□□□□ 0.19
CSNK1E-212ENST00000494610 PCNTO95613 3336 aa16.23■□□□□ 0.19
CSNK1E-212ENST00000494610 KIAA1551Q9HCM1 1747 aa16.23■□□□□ 0.19
CSNK1E-212ENST00000494610 A0A0G2JLW4 131 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms