RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 TRIM35Q9UPQ4 493 aa14.98□□□□□ -0.01
MCF2L-231ENST00000494043 OVOS2A0A0G2JMS6 1433 aa14.98□□□□□ -0.01
MCF2L-231ENST00000494043 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.97□□□□□ -0.01
MCF2L-231ENST00000494043 PARP4Q9UKK3 1724 aaKnown RBP14.97□□□□□ -0.01
MCF2L-231ENST00000494043 LMOD3Q0VAK6 560 aa14.97□□□□□ -0.01
MCF2L-231ENST00000494043 AMOTQ4VCS5 1084 aa14.97□□□□□ -0.01
MCF2L-231ENST00000494043 PLEKHO1Q53GL0 409 aaPredicted RBP14.97□□□□□ -0.01
MCF2L-231ENST00000494043 PKD1L3Q7Z443 1732 aa14.97□□□□□ -0.01
MCF2L-231ENST00000494043 DISP2A7MBM2 1401 aa14.96□□□□□ -0.01
MCF2L-231ENST00000494043 PDE3BQ13370 1112 aa14.96□□□□□ -0.01
MCF2L-231ENST00000494043 DLG5Q8TDM6 1919 aa14.96□□□□□ -0.02
MCF2L-231ENST00000494043 SPATA31A1Q5TZJ5 1347 aa14.95□□□□□ -0.02
MCF2L-231ENST00000494043 SPATA31A5Q5VU36 1347 aa14.95□□□□□ -0.02
MCF2L-231ENST00000494043 SPATA31A7Q8IWB4 1347 aa14.95□□□□□ -0.02
MCF2L-231ENST00000494043 IL2RBP14784 551 aa14.95□□□□□ -0.02
MCF2L-231ENST00000494043 ZNF530Q6P9A1 599 aaPredicted RBP14.95□□□□□ -0.02
MCF2L-231ENST00000494043 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.95□□□□□ -0.02
MCF2L-231ENST00000494043 MAP3K5Q99683 1374 aa14.95□□□□□ -0.02
MCF2L-231ENST00000494043 AFF2P51816 1311 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 WNK3Q9BYP7 1800 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 GOLGA2Q08379 1002 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 VPS72Q15906 364 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 WDR63Q8IWG1 891 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 USP35Q9P2H5 1018 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 USP21Q9UK80 565 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 SPG7Q9UQ90 795 aa14.94□□□□□ -0.02
MCF2L-231ENST00000494043 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
MCF2L-231ENST00000494043 HTATSF1O43719 755 aaKnown RBP14.93□□□□□ -0.02
MCF2L-231ENST00000494043 THRAP3Q9Y2W1 955 aaKnown RBP14.93□□□□□ -0.02
MCF2L-231ENST00000494043 AKAP4Q5JQC9 854 aa14.92□□□□□ -0.02
MCF2L-231ENST00000494043 CDCA7LQ96GN5 454 aa14.92□□□□□ -0.02
MCF2L-231ENST00000494043 LRRC37A3O60309 1634 aa14.92□□□□□ -0.02
MCF2L-231ENST00000494043 IL16Q14005 1332 aa14.92□□□□□ -0.02
MCF2L-231ENST00000494043 E9PSI1 815 aa14.91□□□□□ -0.02
MCF2L-231ENST00000494043 CALD1Q05682 793 aaKnown RBP14.91□□□□□ -0.02
MCF2L-231ENST00000494043 C1orf141Q5JVX7 400 aa14.91□□□□□ -0.02
MCF2L-231ENST00000494043 ZCRB1Q8TBF4 217 aaKnown RBP14.91□□□□□ -0.02
MCF2L-231ENST00000494043 RTF1Q92541 710 aaKnown RBP14.91□□□□□ -0.02
MCF2L-231ENST00000494043 THUMPD2Q9BTF0 503 aaKnown RBP14.91□□□□□ -0.02
MCF2L-231ENST00000494043 CCDC9Q9Y3X0 531 aaKnown RBP14.91□□□□□ -0.02
MCF2L-231ENST00000494043 ATRNO75882 1429 aa14.91□□□□□ -0.02
MCF2L-231ENST00000494043 SLFN5Q08AF3 891 aa14.9□□□□□ -0.02
MCF2L-231ENST00000494043 DCTN1Q14203 1278 aa14.9□□□□□ -0.02
MCF2L-231ENST00000494043 BARGINQ6ZT62 677 aa14.9□□□□□ -0.02
MCF2L-231ENST00000494043 MCM10Q7L590 875 aa14.9□□□□□ -0.02
MCF2L-231ENST00000494043 CDCA7Q9BWT1 371 aaPredicted RBP14.9□□□□□ -0.02
MCF2L-231ENST00000494043 SPINK5Q9NQ38 1064 aaPredicted RBP14.9□□□□□ -0.02
MCF2L-231ENST00000494043 PCDH11XQ9BZA7 1347 aa14.9□□□□□ -0.02
MCF2L-231ENST00000494043 PCDH11YQ9BZA8 1340 aa14.9□□□□□ -0.02
MCF2L-231ENST00000494043 SHANK3Q9BYB0 1731 aa14.89□□□□□ -0.03
MCF2L-231ENST00000494043 PHKG2P15735 406 aa14.89□□□□□ -0.03
MCF2L-231ENST00000494043 TRMT2AQ8IZ69 625 aaKnown RBP14.89□□□□□ -0.03
MCF2L-231ENST00000494043 ADAMTS7Q9UKP4 1686 aa14.89□□□□□ -0.03
MCF2L-231ENST00000494043 TNS2Q63HR2 1409 aa14.89□□□□□ -0.03
MCF2L-231ENST00000494043 CEMIPQ8WUJ3 1361 aa14.88□□□□□ -0.03
MCF2L-231ENST00000494043 CYP27B1O15528 508 aa14.88□□□□□ -0.03
MCF2L-231ENST00000494043 IFNL2Q8IZJ0 200 aa14.88□□□□□ -0.03
MCF2L-231ENST00000494043 GLI3P10071 1580 aa14.87□□□□□ -0.03
MCF2L-231ENST00000494043 DUSP27Q5VZP5 1158 aa14.87□□□□□ -0.03
MCF2L-231ENST00000494043 IL17REQ8NFR9 667 aa14.87□□□□□ -0.03
MCF2L-231ENST00000494043 MYH16Q9H6N6 1097 aa14.87□□□□□ -0.03
MCF2L-231ENST00000494043 IFT57Q9NWB7 429 aa14.87□□□□□ -0.03
MCF2L-231ENST00000494043 TRPC5Q9UL62 973 aaPredicted RBP14.87□□□□□ -0.03
MCF2L-231ENST00000494043 KDM6AO15550 1401 aaPredicted RBP14.86□□□□□ -0.03
MCF2L-231ENST00000494043 RNMTO43148 476 aaKnown RBP14.86□□□□□ -0.03
MCF2L-231ENST00000494043 THSD7AQ9UPZ6 1657 aa14.85□□□□□ -0.03
MCF2L-231ENST00000494043 HSP90AB1P08238 724 aaKnown RBP14.85□□□□□ -0.03
MCF2L-231ENST00000494043 ZNF853P0CG23 659 aa14.85□□□□□ -0.03
MCF2L-231ENST00000494043 GNAI1P63096 354 aa14.85□□□□□ -0.03
MCF2L-231ENST00000494043 MPRIPQ6WCQ1 1025 aa14.85□□□□□ -0.03
MCF2L-231ENST00000494043 GJD4Q96KN9 370 aaPredicted RBP14.85□□□□□ -0.03
MCF2L-231ENST00000494043 LGR6Q9HBX8 967 aa14.85□□□□□ -0.03
MCF2L-231ENST00000494043 FANCIQ9NVI1 1328 aa14.85□□□□□ -0.03
MCF2L-231ENST00000494043 MRC1P22897 1456 aa14.84□□□□□ -0.03
MCF2L-231ENST00000494043 EXOC5O00471 708 aa14.84□□□□□ -0.03
MCF2L-231ENST00000494043 NKX1-1Q15270 411 aaPredicted RBP14.84□□□□□ -0.03
MCF2L-231ENST00000494043 FAM98CQ17RN3 349 aaKnown RBP14.84□□□□□ -0.03
MCF2L-231ENST00000494043 DDX54Q8TDD1 881 aaKnown RBP14.84□□□□□ -0.03
MCF2L-231ENST00000494043 DCAF5Q96JK2 942 aa14.84□□□□□ -0.03
MCF2L-231ENST00000494043 CFAP44Q96MT7 982 aa14.84□□□□□ -0.03
MCF2L-231ENST00000494043 SCN11AQ9UI33 1791 aa14.83□□□□□ -0.03
MCF2L-231ENST00000494043 DDB1Q16531 1140 aa14.83□□□□□ -0.04
MCF2L-231ENST00000494043 TSR2Q969E8 191 aaKnown RBP14.83□□□□□ -0.04
MCF2L-231ENST00000494043 QTRT2Q9H974 415 aaKnown RBP14.83□□□□□ -0.04
MCF2L-231ENST00000494043 LAS1LQ9Y4W2 734 aaKnown RBP14.83□□□□□ -0.04
MCF2L-231ENST00000494043 CHL1O00533 1208 aa14.82□□□□□ -0.04
MCF2L-231ENST00000494043 ZNF772Q68DY9 489 aaPredicted RBP14.82□□□□□ -0.04
MCF2L-231ENST00000494043 MBIPQ9NS73 344 aa14.82□□□□□ -0.04
MCF2L-231ENST00000494043 VIRMAQ69YN4 1812 aaKnown RBP14.82□□□□□ -0.04
MCF2L-231ENST00000494043 TEFQ10587 303 aa14.81□□□□□ -0.04
MCF2L-231ENST00000494043 BABAM1Q9NWV8 329 aa14.81□□□□□ -0.04
MCF2L-231ENST00000494043 SIPA1L3O60292 1781 aaPredicted RBP14.8□□□□□ -0.04
MCF2L-231ENST00000494043 TAF7Q15545 349 aaPredicted RBP14.8□□□□□ -0.04
MCF2L-231ENST00000494043 SLC52A2Q9HAB3 445 aa14.8□□□□□ -0.04
MCF2L-231ENST00000494043 TOGARAM1Q9Y4F4 1720 aa14.8□□□□□ -0.04
MCF2L-231ENST00000494043 ONECUT3O60422 494 aaPredicted RBP14.79□□□□□ -0.04
MCF2L-231ENST00000494043 TSPYL4Q9UJ04 414 aa14.79□□□□□ -0.04
MCF2L-231ENST00000494043 KDM3BQ7LBC6 1761 aa14.78□□□□□ -0.04
MCF2L-231ENST00000494043 A0A0G2JS52 829 aa14.78□□□□□ -0.04
MCF2L-231ENST00000494043 ERVV-2B6SEH9 535 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms