RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SLC27A3Q5K4L6 730 aa16.14■□□□□ 0.17
COL6A3-213ENST00000493475 SYTL4Q96C24 671 aaPredicted RBP16.13■□□□□ 0.17
COL6A3-213ENST00000493475 CGNL1Q0VF96 1302 aa16.13■□□□□ 0.17
COL6A3-213ENST00000493475 HOXC9P31274 260 aa16.12■□□□□ 0.17
COL6A3-213ENST00000493475 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
COL6A3-213ENST00000493475 MAP3K19Q56UN5 1328 aa16.12■□□□□ 0.17
COL6A3-213ENST00000493475 USP47Q96K76 1375 aa16.12■□□□□ 0.17
COL6A3-213ENST00000493475 ZCRB1Q8TBF4 217 aaKnown RBP16.11■□□□□ 0.17
COL6A3-213ENST00000493475 RAPGEF4Q8WZA2 1011 aa16.11■□□□□ 0.17
COL6A3-213ENST00000493475 SAMD1Q6SPF0 538 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-213ENST00000493475 TIMELESSQ9UNS1 1208 aa16.1■□□□□ 0.17
COL6A3-213ENST00000493475 CASZ1Q86V15 1759 aa16.1■□□□□ 0.17
COL6A3-213ENST00000493475 POLD1P28340 1107 aa16.09■□□□□ 0.17
COL6A3-213ENST00000493475 SLC16A10Q8TF71 515 aa16.09■□□□□ 0.17
COL6A3-213ENST00000493475 KIF24Q5T7B8 1368 aa16.09■□□□□ 0.17
COL6A3-213ENST00000493475 ARXQ96QS3 562 aa16.08■□□□□ 0.16
COL6A3-213ENST00000493475 TATP17735 454 aaPredicted RBP16.07■□□□□ 0.16
COL6A3-213ENST00000493475 PTGER2P43116 358 aa16.07■□□□□ 0.16
COL6A3-213ENST00000493475 TFCP2L1Q9NZI6 479 aa16.07■□□□□ 0.16
COL6A3-213ENST00000493475 PRIM1P49642 420 aaKnown RBP16.06■□□□□ 0.16
COL6A3-213ENST00000493475 FHDC1Q9C0D6 1143 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-213ENST00000493475 PDGFDQ9GZP0 370 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-213ENST00000493475 GGNBP2Q9H3C7 697 aa16.06■□□□□ 0.16
COL6A3-213ENST00000493475 FLT4P35916 1363 aa16.05■□□□□ 0.16
COL6A3-213ENST00000493475 FYB1O15117 783 aa16.05■□□□□ 0.16
COL6A3-213ENST00000493475 SYT17Q9BSW7 474 aa16.05■□□□□ 0.16
COL6A3-213ENST00000493475 BTAF1O14981 1849 aa16.05■□□□□ 0.16
COL6A3-213ENST00000493475 PCDH11XQ9BZA7 1347 aa16.04■□□□□ 0.16
COL6A3-213ENST00000493475 PCDH11YQ9BZA8 1340 aa16.04■□□□□ 0.16
COL6A3-213ENST00000493475 RRS1Q15050 365 aaKnown RBP16.04■□□□□ 0.16
COL6A3-213ENST00000493475 KAT6BQ8WYB5 2073 aa16.04■□□□□ 0.16
COL6A3-213ENST00000493475 INSRP06213 1382 aa16.03■□□□□ 0.16
COL6A3-213ENST00000493475 CLSPNQ9HAW4 1339 aa16.03■□□□□ 0.16
COL6A3-213ENST00000493475 CCNL1Q9UK58 526 aaPredicted RBP16.03■□□□□ 0.16
COL6A3-213ENST00000493475 MYOM1P52179 1685 aa16.02■□□□□ 0.16
COL6A3-213ENST00000493475 PAPPAQ13219 1627 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 MAP3K5Q99683 1374 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 ZNF827Q17R98 1081 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 NBPF6Q5VWK0 638 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 KLHL34Q8N239 644 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 AKT1S1Q96B36 256 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 NBPF4Q96M43 638 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 LRRC4BQ9NT99 713 aa16.01■□□□□ 0.15
COL6A3-213ENST00000493475 MEGF6O75095 1541 aa15.99■□□□□ 0.15
COL6A3-213ENST00000493475 PPM1GO15355 546 aaPredicted RBP15.99■□□□□ 0.15
COL6A3-213ENST00000493475 GPR162Q16538 588 aa15.99■□□□□ 0.15
COL6A3-213ENST00000493475 FLAD1Q8NFF5 587 aa15.99■□□□□ 0.15
COL6A3-213ENST00000493475 SGIP1Q9BQI5 828 aa15.99■□□□□ 0.15
COL6A3-213ENST00000493475 FBLN1P23142 703 aa15.98■□□□□ 0.15
COL6A3-213ENST00000493475 HSP90AB2PQ58FF8 381 aa15.98■□□□□ 0.15
COL6A3-213ENST00000493475 USHBP1Q8N6Y0 703 aa15.98■□□□□ 0.15
COL6A3-213ENST00000493475 SMARCC1Q92922 1105 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-213ENST00000493475 NSD3Q9BZ95 1437 aa15.98■□□□□ 0.15
COL6A3-213ENST00000493475 SPG7Q9UQ90 795 aa15.98■□□□□ 0.15
COL6A3-213ENST00000493475 DOT1LQ8TEK3 1739 aa15.97■□□□□ 0.15
COL6A3-213ENST00000493475 KIF20BQ96Q89 1820 aa15.97■□□□□ 0.15
COL6A3-213ENST00000493475 RBM42Q9BTD8 480 aaKnown RBP15.97■□□□□ 0.15
COL6A3-213ENST00000493475 PNPLA7Q6ZV29 1317 aa15.96■□□□□ 0.15
COL6A3-213ENST00000493475 MPRIPQ6WCQ1 1025 aa15.95■□□□□ 0.14
COL6A3-213ENST00000493475 POLR3GLQ9BT43 218 aa15.95■□□□□ 0.14
COL6A3-213ENST00000493475 NSD2O96028 1365 aa15.95■□□□□ 0.14
COL6A3-213ENST00000493475 QSER1Q2KHR3 1735 aa15.94■□□□□ 0.14
COL6A3-213ENST00000493475 PELP1Q8IZL8 1130 aaKnown RBP15.94■□□□□ 0.14
COL6A3-213ENST00000493475 PCGF6Q9BYE7 350 aa15.94■□□□□ 0.14
COL6A3-213ENST00000493475 PALLDQ8WX93 1383 aa15.93■□□□□ 0.14
COL6A3-213ENST00000493475 AK7Q96M32 723 aa15.93■□□□□ 0.14
COL6A3-213ENST00000493475 GRIN3BO60391 1043 aa15.92■□□□□ 0.14
COL6A3-213ENST00000493475 KCNQ4P56696 695 aa15.92■□□□□ 0.14
COL6A3-213ENST00000493475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL6A3-213ENST00000493475 EMILIN1Q9Y6C2 1016 aa15.92■□□□□ 0.14
COL6A3-213ENST00000493475 WASHC2AQ641Q2 1341 aa15.92■□□□□ 0.14
COL6A3-213ENST00000493475 LY75O60449 1722 aa15.91■□□□□ 0.14
COL6A3-213ENST00000493475 EIF4G2P78344 907 aaKnown RBP eCLIP15.91■□□□□ 0.14
COL6A3-213ENST00000493475 ZNF784Q8NCA9 323 aaPredicted RBP15.91■□□□□ 0.14
COL6A3-213ENST00000493475 CARD14Q9BXL6 1004 aa15.91■□□□□ 0.14
COL6A3-213ENST00000493475 PLEKHG2Q9H7P9 1386 aa15.9■□□□□ 0.14
COL6A3-213ENST00000493475 TMOD3Q9NYL9 352 aa15.9■□□□□ 0.14
COL6A3-213ENST00000493475 RGPD2P0DJD1 1756 aa15.9■□□□□ 0.14
COL6A3-213ENST00000493475 SHANK3Q9BYB0 1731 aa15.89■□□□□ 0.13
COL6A3-213ENST00000493475 IFNL2Q8IZJ0 200 aa15.89■□□□□ 0.13
COL6A3-213ENST00000493475 UTRNP46939 3433 aa15.88■□□□□ 0.13
COL6A3-213ENST00000493475 CYP27B1O15528 508 aa15.88■□□□□ 0.13
COL6A3-213ENST00000493475 COL23A1Q86Y22 540 aaPredicted RBP15.88■□□□□ 0.13
COL6A3-213ENST00000493475 HSP90AB1P08238 724 aaKnown RBP15.87■□□□□ 0.13
COL6A3-213ENST00000493475 POLA2Q14181 598 aa15.87■□□□□ 0.13
COL6A3-213ENST00000493475 NKX1-1Q15270 411 aaPredicted RBP15.87■□□□□ 0.13
COL6A3-213ENST00000493475 CHRDL2Q6WN34 429 aa15.87■□□□□ 0.13
COL6A3-213ENST00000493475 EYA1Q99502 592 aa15.86■□□□□ 0.13
COL6A3-213ENST00000493475 CD2APQ9Y5K6 639 aa15.86■□□□□ 0.13
COL6A3-213ENST00000493475 TNNT2P45379 298 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-213ENST00000493475 POLKQ9UBT6 870 aa15.85■□□□□ 0.13
COL6A3-213ENST00000493475 C5P01031 1676 aa15.85■□□□□ 0.13
COL6A3-213ENST00000493475 NCAPD2Q15021 1401 aa15.85■□□□□ 0.13
COL6A3-213ENST00000493475 LOC102724428A0A0B4J2F2 783 aa15.84■□□□□ 0.13
COL6A3-213ENST00000493475 SSFA2P28290 1259 aa15.84■□□□□ 0.13
COL6A3-213ENST00000493475 SIK1P57059 783 aa15.84■□□□□ 0.13
COL6A3-213ENST00000493475 MSL1Q68DK7 614 aa15.84■□□□□ 0.13
COL6A3-213ENST00000493475 CCER1Q8TC90 406 aaPredicted RBP15.84■□□□□ 0.13
COL6A3-213ENST00000493475 PIGBQ92521 554 aa15.84■□□□□ 0.13
COL6A3-213ENST00000493475 PKD1L3Q7Z443 1732 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 215.8 ms