RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 KLHL34Q8N239 644 aa18.63■□□□□ 0.57
HDAC3-213ENST00000492506 TMC1Q8TDI8 760 aa18.63■□□□□ 0.57
HDAC3-213ENST00000492506 PRIM1P49642 420 aaKnown RBP18.62■□□□□ 0.57
HDAC3-213ENST00000492506 NEUROD1Q13562 356 aa18.62■□□□□ 0.57
HDAC3-213ENST00000492506 HDGFL2Q7Z4V5 671 aaPredicted RBP18.62■□□□□ 0.57
HDAC3-213ENST00000492506 TFCP2L1Q9NZI6 479 aa18.62■□□□□ 0.57
HDAC3-213ENST00000492506 GIGYF1O75420 1035 aaPredicted RBP18.61■□□□□ 0.57
HDAC3-213ENST00000492506 TAF1LQ8IZX4 1826 aa18.59■□□□□ 0.57
HDAC3-213ENST00000492506 YBX3P16989 372 aaKnown RBP eCLIP18.59■□□□□ 0.57
HDAC3-213ENST00000492506 LTV1Q96GA3 475 aaPredicted RBP18.59■□□□□ 0.57
HDAC3-213ENST00000492506 MEGF6O75095 1541 aa18.59■□□□□ 0.57
HDAC3-213ENST00000492506 C5P01031 1676 aa18.58■□□□□ 0.57
HDAC3-213ENST00000492506 SYTL4Q96C24 671 aaPredicted RBP18.58■□□□□ 0.56
HDAC3-213ENST00000492506 TERF2IPQ9NYB0 399 aa18.58■□□□□ 0.56
HDAC3-213ENST00000492506 MAP3K19Q56UN5 1328 aa18.57■□□□□ 0.56
HDAC3-213ENST00000492506 PUS7Q96PZ0 661 aaKnown RBP18.57■□□□□ 0.56
HDAC3-213ENST00000492506 CARD11Q9BXL7 1154 aa18.57■□□□□ 0.56
HDAC3-213ENST00000492506 FBLN1P23142 703 aa18.56■□□□□ 0.56
HDAC3-213ENST00000492506 HOXC9P31274 260 aa18.56■□□□□ 0.56
HDAC3-213ENST00000492506 COL23A1Q86Y22 540 aaPredicted RBP18.56■□□□□ 0.56
HDAC3-213ENST00000492506 ZCRB1Q8TBF4 217 aaKnown RBP18.55■□□□□ 0.56
HDAC3-213ENST00000492506 CCNL1Q9UK58 526 aaPredicted RBP18.55■□□□□ 0.56
HDAC3-213ENST00000492506 GRIN3BO60391 1043 aa18.54■□□□□ 0.56
HDAC3-213ENST00000492506 IFFO2Q5TF58 517 aa18.53■□□□□ 0.56
HDAC3-213ENST00000492506 ITGB4P16144 1822 aa18.52■□□□□ 0.56
HDAC3-213ENST00000492506 COG3Q96JB2 828 aa18.51■□□□□ 0.55
HDAC3-213ENST00000492506 USP47Q96K76 1375 aa18.51■□□□□ 0.55
HDAC3-213ENST00000492506 TOGARAM1Q9Y4F4 1720 aa18.51■□□□□ 0.55
HDAC3-213ENST00000492506 ATP10DQ9P241 1426 aa18.5■□□□□ 0.55
HDAC3-213ENST00000492506 AMPHP49418 695 aa18.5■□□□□ 0.55
HDAC3-213ENST00000492506 NBPF6Q5VWK0 638 aa18.5■□□□□ 0.55
HDAC3-213ENST00000492506 MSL1Q68DK7 614 aa18.5■□□□□ 0.55
HDAC3-213ENST00000492506 NBPF4Q96M43 638 aa18.5■□□□□ 0.55
HDAC3-213ENST00000492506 TESK2Q96S53 571 aa18.5■□□□□ 0.55
HDAC3-213ENST00000492506 MSH5O43196 834 aa18.49■□□□□ 0.55
HDAC3-213ENST00000492506 CENPBP07199 599 aaPredicted RBP18.49■□□□□ 0.55
HDAC3-213ENST00000492506 RTL1A6NKG5 1358 aa18.49■□□□□ 0.55
HDAC3-213ENST00000492506 UBR3Q6ZT12 1888 aa18.49■□□□□ 0.55
HDAC3-213ENST00000492506 C4BP0C0L5 1744 aa18.48■□□□□ 0.55
HDAC3-213ENST00000492506 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
HDAC3-213ENST00000492506 ADCY9O60503 1353 aa18.47■□□□□ 0.55
HDAC3-213ENST00000492506 USHBP1Q8N6Y0 703 aa18.47■□□□□ 0.55
HDAC3-213ENST00000492506 CD2APQ9Y5K6 639 aa18.47■□□□□ 0.55
HDAC3-213ENST00000492506 MAP2P11137 1827 aaKnown RBP18.46■□□□□ 0.55
HDAC3-213ENST00000492506 RRS1Q15050 365 aaKnown RBP18.45■□□□□ 0.54
HDAC3-213ENST00000492506 KIF20BQ96Q89 1820 aa18.44■□□□□ 0.54
HDAC3-213ENST00000492506 PKD1L3Q7Z443 1732 aa18.44■□□□□ 0.54
HDAC3-213ENST00000492506 AMIGO3Q86WK7 504 aa18.44■□□□□ 0.54
HDAC3-213ENST00000492506 PALLDQ8WX93 1383 aa18.43■□□□□ 0.54
HDAC3-213ENST00000492506 ST20-MTHFSA0A0A6YYL1 179 aa18.43■□□□□ 0.54
HDAC3-213ENST00000492506 FYB1O15117 783 aa18.43■□□□□ 0.54
HDAC3-213ENST00000492506 FLAD1Q8NFF5 587 aa18.43■□□□□ 0.54
HDAC3-213ENST00000492506 RAPGEF4Q8WZA2 1011 aa18.43■□□□□ 0.54
HDAC3-213ENST00000492506 PCDH11XQ9BZA7 1347 aa18.42■□□□□ 0.54
HDAC3-213ENST00000492506 PCDH11YQ9BZA8 1340 aa18.42■□□□□ 0.54
HDAC3-213ENST00000492506 CYP27B1O15528 508 aa18.41■□□□□ 0.54
HDAC3-213ENST00000492506 TATP17735 454 aaPredicted RBP18.41■□□□□ 0.54
HDAC3-213ENST00000492506 HSP90AB2PQ58FF8 381 aa18.41■□□□□ 0.54
HDAC3-213ENST00000492506 GPBP1L1Q9HC44 474 aaPredicted RBP18.41■□□□□ 0.54
HDAC3-213ENST00000492506 INSRP06213 1382 aa18.41■□□□□ 0.54
HDAC3-213ENST00000492506 SMG6Q86US8 1419 aaKnown RBP18.4■□□□□ 0.54
HDAC3-213ENST00000492506 MPRIPQ6WCQ1 1025 aa18.4■□□□□ 0.54
HDAC3-213ENST00000492506 GGNBP2Q9H3C7 697 aa18.4■□□□□ 0.54
HDAC3-213ENST00000492506 HSPA6P17066 643 aa18.38■□□□□ 0.53
HDAC3-213ENST00000492506 SMIM5Q71RC9 77 aa18.38■□□□□ 0.53
HDAC3-213ENST00000492506 TONSLQ96HA7 1378 aa18.38■□□□□ 0.53
HDAC3-213ENST00000492506 KIF13BQ9NQT8 1826 aa18.37■□□□□ 0.53
HDAC3-213ENST00000492506 HMGB2P26583 209 aaKnown RBP18.37■□□□□ 0.53
HDAC3-213ENST00000492506 IGSF1Q8N6C5 1336 aa18.37■□□□□ 0.53
HDAC3-213ENST00000492506 NCAPD2Q15021 1401 aa18.37■□□□□ 0.53
HDAC3-213ENST00000492506 CICQ96RK0 1608 aaPredicted RBP18.37■□□□□ 0.53
HDAC3-213ENST00000492506 KIAA1551Q9HCM1 1747 aa18.37■□□□□ 0.53
HDAC3-213ENST00000492506 FLT4P35916 1363 aa18.36■□□□□ 0.53
HDAC3-213ENST00000492506 KIF24Q5T7B8 1368 aa18.36■□□□□ 0.53
HDAC3-213ENST00000492506 ZNF526Q8TF50 670 aaPredicted RBP18.36■□□□□ 0.53
HDAC3-213ENST00000492506 PIGBQ92521 554 aa18.36■□□□□ 0.53
HDAC3-213ENST00000492506 ANKRD26Q9UPS8 1709 aa18.36■□□□□ 0.53
HDAC3-213ENST00000492506 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.35■□□□□ 0.53
HDAC3-213ENST00000492506 SLC24A1O60721 1099 aa18.35■□□□□ 0.53
HDAC3-213ENST00000492506 SMARCC1Q92922 1105 aaPredicted RBP18.35■□□□□ 0.53
HDAC3-213ENST00000492506 AK7Q96M32 723 aa18.35■□□□□ 0.53
HDAC3-213ENST00000492506 NKX1-1Q15270 411 aaPredicted RBP18.34■□□□□ 0.53
HDAC3-213ENST00000492506 WWC3Q9ULE0 1092 aa18.34■□□□□ 0.53
HDAC3-213ENST00000492506 PHF14O94880 888 aa18.33■□□□□ 0.52
HDAC3-213ENST00000492506 NSD3Q9BZ95 1437 aa18.32■□□□□ 0.52
HDAC3-213ENST00000492506 N4BP2Q86UW6 1770 aaPredicted RBP18.32■□□□□ 0.52
HDAC3-213ENST00000492506 KIF3CO14782 793 aa18.32■□□□□ 0.52
HDAC3-213ENST00000492506 SSFA2P28290 1259 aa18.32■□□□□ 0.52
HDAC3-213ENST00000492506 LINC00116Q8NCU8 138 aa18.32■□□□□ 0.52
HDAC3-213ENST00000492506 LOC102724428A0A0B4J2F2 783 aa18.31■□□□□ 0.52
HDAC3-213ENST00000492506 SIK1P57059 783 aa18.31■□□□□ 0.52
HDAC3-213ENST00000492506 BRCA1P38398 1863 aaKnown RBP18.31■□□□□ 0.52
HDAC3-213ENST00000492506 EMILIN1Q9Y6C2 1016 aa18.3■□□□□ 0.52
HDAC3-213ENST00000492506 ITPK1Q13572 414 aa18.29■□□□□ 0.52
HDAC3-213ENST00000492506 CARD14Q9BXL6 1004 aa18.29■□□□□ 0.52
HDAC3-213ENST00000492506 PXDNLA1KZ92 1463 aa18.28■□□□□ 0.52
HDAC3-213ENST00000492506 TMF1P82094 1093 aa18.28■□□□□ 0.52
HDAC3-213ENST00000492506 ZNF831Q5JPB2 1677 aa18.28■□□□□ 0.52
HDAC3-213ENST00000492506 ASAP1Q9ULH1 1129 aa18.27■□□□□ 0.52
HDAC3-213ENST00000492506 COL5A3P25940 1745 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms