RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ACSBG1Q96GR2 724 aa33.85■■■■□ 3.01
UPF3A-209ENST00000492270 KCNQ2O43526 872 aa33.84■■■■□ 3.01
UPF3A-209ENST00000492270 DDX54Q8TDD1 881 aaKnown RBP33.83■■■■□ 3.01
UPF3A-209ENST00000492270 MORC1Q86VD1 984 aa33.81■■■■□ 3
UPF3A-209ENST00000492270 PKD1L3Q7Z443 1732 aa33.81■■■■□ 3
UPF3A-209ENST00000492270 NCAPD2Q15021 1401 aa33.8■■■■□ 3
UPF3A-209ENST00000492270 AMER1Q5JTC6 1135 aaPredicted RBP33.8■■■■□ 3
UPF3A-209ENST00000492270 ZCRB1Q8TBF4 217 aaKnown RBP33.79■■■■□ 3
UPF3A-209ENST00000492270 PLSCR1O15162 318 aa33.78■■■■□ 3
UPF3A-209ENST00000492270 RAPGEF4Q8WZA2 1011 aa33.78■■■■□ 3
UPF3A-209ENST00000492270 R3HDM1Q15032 1099 aaKnown RBP33.77■■■■□ 3
UPF3A-209ENST00000492270 PER1O15534 1290 aaPredicted RBP33.76■■■□□ 2.99
UPF3A-209ENST00000492270 TATP17735 454 aaPredicted RBP33.76■■■□□ 2.99
UPF3A-209ENST00000492270 SRCAPQ6ZRS2 3230 aa33.75■■■□□ 2.99
UPF3A-209ENST00000492270 EIF4A2Q14240 407 aaKnown RBP33.74■■■□□ 2.99
UPF3A-209ENST00000492270 EYA1Q99502 592 aa33.74■■■□□ 2.99
UPF3A-209ENST00000492270 PROM2Q8N271 834 aa33.71■■■□□ 2.99
UPF3A-209ENST00000492270 LRP5O75197 1615 aa33.69■■■□□ 2.98
UPF3A-209ENST00000492270 TOGARAM1Q9Y4F4 1720 aa33.69■■■□□ 2.98
UPF3A-209ENST00000492270 CC2D1BQ5T0F9 858 aaKnown RBP33.67■■■□□ 2.98
UPF3A-209ENST00000492270 ITGB4P16144 1822 aa33.65■■■□□ 2.98
UPF3A-209ENST00000492270 PCDH11XQ9BZA7 1347 aa33.65■■■□□ 2.98
UPF3A-209ENST00000492270 PCDH11YQ9BZA8 1340 aa33.65■■■□□ 2.98
UPF3A-209ENST00000492270 TXNRD1Q16881 649 aa33.65■■■□□ 2.98
UPF3A-209ENST00000492270 NBPF14Q5TI25 921 aa33.65■■■□□ 2.98
UPF3A-209ENST00000492270 ANO8Q9HCE9 1232 aaPredicted RBP33.64■■■□□ 2.98
UPF3A-209ENST00000492270 SYTL4Q96C24 671 aaPredicted RBP33.63■■■□□ 2.97
UPF3A-209ENST00000492270 LY75O60449 1722 aa33.62■■■□□ 2.97
UPF3A-209ENST00000492270 IGSF1Q8N6C5 1336 aa33.62■■■□□ 2.97
UPF3A-209ENST00000492270 CYP27B1O15528 508 aa33.62■■■□□ 2.97
UPF3A-209ENST00000492270 PRIM1P49642 420 aaKnown RBP33.62■■■□□ 2.97
UPF3A-209ENST00000492270 CNGB1Q14028 1251 aaPredicted RBP33.62■■■□□ 2.97
UPF3A-209ENST00000492270 PAPPAQ13219 1627 aa33.61■■■□□ 2.97
UPF3A-209ENST00000492270 NPC1L1Q9UHC9 1359 aa33.59■■■□□ 2.97
UPF3A-209ENST00000492270 CASZ1Q86V15 1759 aa33.58■■■□□ 2.97
UPF3A-209ENST00000492270 MTHFSP49914 203 aa33.55■■■□□ 2.96
UPF3A-209ENST00000492270 SPG7Q9UQ90 795 aa33.55■■■□□ 2.96
UPF3A-209ENST00000492270 AEBP1Q8IUX7 1158 aa33.52■■■□□ 2.96
UPF3A-209ENST00000492270 IL13P35225 146 aa33.51■■■□□ 2.95
UPF3A-209ENST00000492270 LRRC4BQ9NT99 713 aa33.51■■■□□ 2.95
UPF3A-209ENST00000492270 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.51■■■□□ 2.95
UPF3A-209ENST00000492270 TUBGCP6Q96RT7 1819 aa33.49■■■□□ 2.95
UPF3A-209ENST00000492270 PLEKHG2Q9H7P9 1386 aa33.47■■■□□ 2.95
UPF3A-209ENST00000492270 NKX1-1Q15270 411 aaPredicted RBP33.47■■■□□ 2.95
UPF3A-209ENST00000492270 STK32BQ9NY57 414 aa33.47■■■□□ 2.95
UPF3A-209ENST00000492270 COL3A1P02461 1466 aaPredicted RBP33.46■■■□□ 2.95
UPF3A-209ENST00000492270 PHKG2P15735 406 aa33.46■■■□□ 2.95
UPF3A-209ENST00000492270 KCNQ4P56696 695 aa33.46■■■□□ 2.95
UPF3A-209ENST00000492270 SLC15A2Q16348 729 aa33.45■■■□□ 2.95
UPF3A-209ENST00000492270 SULT6B1Q6IMI4 303 aa33.45■■■□□ 2.95
UPF3A-209ENST00000492270 MPRIPQ6WCQ1 1025 aa33.45■■■□□ 2.95
UPF3A-209ENST00000492270 PDGFDQ9GZP0 370 aaPredicted RBP33.45■■■□□ 2.95
UPF3A-209ENST00000492270 KDRP35968 1356 aa33.45■■■□□ 2.94
UPF3A-209ENST00000492270 IFNL2Q8IZJ0 200 aa33.44■■■□□ 2.94
UPF3A-209ENST00000492270 TAF1LQ8IZX4 1826 aa33.44■■■□□ 2.94
UPF3A-209ENST00000492270 QSER1Q2KHR3 1735 aa33.43■■■□□ 2.94
UPF3A-209ENST00000492270 C5P01031 1676 aa33.42■■■□□ 2.94
UPF3A-209ENST00000492270 ZNF827Q17R98 1081 aa33.42■■■□□ 2.94
UPF3A-209ENST00000492270 SLC27A3Q5K4L6 730 aa33.41■■■□□ 2.94
UPF3A-209ENST00000492270 VIRMAQ69YN4 1812 aaKnown RBP33.41■■■□□ 2.94
UPF3A-209ENST00000492270 PLEKHO1Q53GL0 409 aaPredicted RBP33.39■■■□□ 2.94
UPF3A-209ENST00000492270 PALLDQ8WX93 1383 aa33.37■■■□□ 2.93
UPF3A-209ENST00000492270 DIAPH1O60610 1272 aaKnown RBP33.37■■■□□ 2.93
UPF3A-209ENST00000492270 ZNF530Q6P9A1 599 aaPredicted RBP33.37■■■□□ 2.93
UPF3A-209ENST00000492270 PIGBQ92521 554 aa33.37■■■□□ 2.93
UPF3A-209ENST00000492270 CCNL1Q9UK58 526 aaPredicted RBP33.37■■■□□ 2.93
UPF3A-209ENST00000492270 HMOX1P09601 288 aa33.36■■■□□ 2.93
UPF3A-209ENST00000492270 SCN11AQ9UI33 1791 aa33.35■■■□□ 2.93
UPF3A-209ENST00000492270 AMOTQ4VCS5 1084 aa33.35■■■□□ 2.93
UPF3A-209ENST00000492270 KDM6AO15550 1401 aaPredicted RBP33.35■■■□□ 2.93
UPF3A-209ENST00000492270 AKT1S1Q96B36 256 aa33.34■■■□□ 2.93
UPF3A-209ENST00000492270 SPON1Q9HCB6 807 aa33.32■■■□□ 2.92
UPF3A-209ENST00000492270 TMOD3Q9NYL9 352 aa33.32■■■□□ 2.92
UPF3A-209ENST00000492270 ZBTB7AO95365 584 aa33.31■■■□□ 2.92
UPF3A-209ENST00000492270 PPP2R1AP30153 589 aa33.28■■■□□ 2.92
UPF3A-209ENST00000492270 DCAF5Q96JK2 942 aa33.28■■■□□ 2.92
UPF3A-209ENST00000492270 C4BP0C0L5 1744 aa33.28■■■□□ 2.92
UPF3A-209ENST00000492270 HSP90AB1P08238 724 aaKnown RBP33.27■■■□□ 2.92
UPF3A-209ENST00000492270 SMARCC1Q92922 1105 aaPredicted RBP33.27■■■□□ 2.92
UPF3A-209ENST00000492270 U2SURPO15042 1029 aaKnown RBP33.26■■■□□ 2.91
UPF3A-209ENST00000492270 C1orf141Q5JVX7 400 aa33.26■■■□□ 2.91
UPF3A-209ENST00000492270 ASAP1Q9ULH1 1129 aa33.26■■■□□ 2.91
UPF3A-209ENST00000492270 ATF5Q9Y2D1 282 aaPredicted RBP33.25■■■□□ 2.91
UPF3A-209ENST00000492270 PNPLA7Q6ZV29 1317 aa33.25■■■□□ 2.91
UPF3A-209ENST00000492270 ERVV-2B6SEH9 535 aa33.24■■■□□ 2.91
UPF3A-209ENST00000492270 TFCP2L1Q9NZI6 479 aa33.23■■■□□ 2.91
UPF3A-209ENST00000492270 ATG3Q9NT62 314 aa33.22■■■□□ 2.91
UPF3A-209ENST00000492270 UBR3Q6ZT12 1888 aa33.22■■■□□ 2.91
UPF3A-209ENST00000492270 CFAP53Q96M91 514 aa33.21■■■□□ 2.91
UPF3A-209ENST00000492270 COL24A1Q17RW2 1714 aa33.21■■■□□ 2.91
UPF3A-209ENST00000492270 ADAMTS7Q9UKP4 1686 aa33.2■■■□□ 2.91
UPF3A-209ENST00000492270 PTGER2P43116 358 aa33.2■■■□□ 2.91
UPF3A-209ENST00000492270 MTFR1LQ9H019 292 aa33.19■■■□□ 2.9
UPF3A-209ENST00000492270 PPP1R1BQ9UD71 204 aaPredicted RBP33.19■■■□□ 2.9
UPF3A-209ENST00000492270 ZNF831Q5JPB2 1677 aa33.18■■■□□ 2.9
UPF3A-209ENST00000492270 LOC102724428A0A0B4J2F2 783 aa33.18■■■□□ 2.9
UPF3A-209ENST00000492270 SIK1P57059 783 aa33.18■■■□□ 2.9
UPF3A-209ENST00000492270 CABP4P57796 275 aa33.18■■■□□ 2.9
UPF3A-209ENST00000492270 MTHFSDQ2M296 383 aaKnown RBP33.18■■■□□ 2.9
UPF3A-209ENST00000492270 AKAP4Q5JQC9 854 aa33.18■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms