RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 MAP2P11137 1827 aaKnown RBP11.66□□□□□ -0.54
SMARCB1-207ENST00000491967 PTGER2P43116 358 aa11.66□□□□□ -0.54
SMARCB1-207ENST00000491967 SGIP1Q9BQI5 828 aa11.66□□□□□ -0.54
SMARCB1-207ENST00000491967 LRRC4BQ9NT99 713 aa11.66□□□□□ -0.54
SMARCB1-207ENST00000491967 NSD3Q9BZ95 1437 aa11.66□□□□□ -0.54
SMARCB1-207ENST00000491967 LY75O60449 1722 aa11.66□□□□□ -0.54
SMARCB1-207ENST00000491967 SLC27A3Q5K4L6 730 aa11.65□□□□□ -0.54
SMARCB1-207ENST00000491967 DDX54Q8TDD1 881 aaKnown RBP11.65□□□□□ -0.54
SMARCB1-207ENST00000491967 STK32BQ9NY57 414 aa11.65□□□□□ -0.54
SMARCB1-207ENST00000491967 QSER1Q2KHR3 1735 aa11.65□□□□□ -0.54
SMARCB1-207ENST00000491967 COL24A1Q17RW2 1714 aa11.64□□□□□ -0.55
SMARCB1-207ENST00000491967 PRIM1P49642 420 aaKnown RBP11.64□□□□□ -0.55
SMARCB1-207ENST00000491967 AKT1S1Q96B36 256 aa11.64□□□□□ -0.55
SMARCB1-207ENST00000491967 DOT1LQ8TEK3 1739 aa11.63□□□□□ -0.55
SMARCB1-207ENST00000491967 WASHC2AQ641Q2 1341 aa11.63□□□□□ -0.55
SMARCB1-207ENST00000491967 SMG6Q86US8 1419 aaKnown RBP11.63□□□□□ -0.55
SMARCB1-207ENST00000491967 EIF4G2P78344 907 aaKnown RBP eCLIP11.63□□□□□ -0.55
SMARCB1-207ENST00000491967 PKD1L3Q7Z443 1732 aa11.63□□□□□ -0.55
SMARCB1-207ENST00000491967 ZNF827Q17R98 1081 aa11.62□□□□□ -0.55
SMARCB1-207ENST00000491967 MTFR1LQ9H019 292 aa11.62□□□□□ -0.55
SMARCB1-207ENST00000491967 POLKQ9UBT6 870 aa11.62□□□□□ -0.55
SMARCB1-207ENST00000491967 EMILIN1Q9Y6C2 1016 aa11.62□□□□□ -0.55
SMARCB1-207ENST00000491967 HSPA5P11021 654 aaKnown RBP11.61□□□□□ -0.55
SMARCB1-207ENST00000491967 NKX1-1Q15270 411 aaPredicted RBP11.61□□□□□ -0.55
SMARCB1-207ENST00000491967 RAPGEF4Q8WZA2 1011 aa11.61□□□□□ -0.55
SMARCB1-207ENST00000491967 PLEKHG2Q9H7P9 1386 aa11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 CYP27B1O15528 508 aa11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 ZBTB7AO95365 584 aa11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 TATP17735 454 aaPredicted RBP11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 USHBP1Q8N6Y0 703 aa11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 PCDH11XQ9BZA7 1347 aa11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 PCDH11YQ9BZA8 1340 aa11.6□□□□□ -0.55
SMARCB1-207ENST00000491967 MAP3K5Q99683 1374 aa11.59□□□□□ -0.55
SMARCB1-207ENST00000491967 ITGB4P16144 1822 aa11.59□□□□□ -0.55
SMARCB1-207ENST00000491967 TUBGCP6Q96RT7 1819 aa11.59□□□□□ -0.55
SMARCB1-207ENST00000491967 SLC16A10Q8TF71 515 aa11.59□□□□□ -0.55
SMARCB1-207ENST00000491967 ATF5Q9Y2D1 282 aaPredicted RBP11.59□□□□□ -0.55
SMARCB1-207ENST00000491967 CCER1Q8TC90 406 aaPredicted RBP11.58□□□□□ -0.56
SMARCB1-207ENST00000491967 EYA1Q99502 592 aa11.58□□□□□ -0.56
SMARCB1-207ENST00000491967 PANK3Q9H999 370 aa11.58□□□□□ -0.56
SMARCB1-207ENST00000491967 PPP1R1BQ9UD71 204 aaPredicted RBP11.58□□□□□ -0.56
SMARCB1-207ENST00000491967 PNPLA7Q6ZV29 1317 aa11.58□□□□□ -0.56
SMARCB1-207ENST00000491967 TOGARAM1Q9Y4F4 1720 aa11.57□□□□□ -0.56
SMARCB1-207ENST00000491967 SYT17Q9BSW7 474 aa11.57□□□□□ -0.56
SMARCB1-207ENST00000491967 TAF1LQ8IZX4 1826 aa11.57□□□□□ -0.56
SMARCB1-207ENST00000491967 SYTL4Q96C24 671 aaPredicted RBP11.56□□□□□ -0.56
SMARCB1-207ENST00000491967 HMGB2P26583 209 aaKnown RBP11.55□□□□□ -0.56
SMARCB1-207ENST00000491967 KCNQ4P56696 695 aa11.55□□□□□ -0.56
SMARCB1-207ENST00000491967 EIF4A2Q14240 407 aaKnown RBP11.55□□□□□ -0.56
SMARCB1-207ENST00000491967 FHDC1Q9C0D6 1143 aaPredicted RBP11.55□□□□□ -0.56
SMARCB1-207ENST00000491967 CCNL1Q9UK58 526 aaPredicted RBP11.55□□□□□ -0.56
SMARCB1-207ENST00000491967 IGSF1Q8N6C5 1336 aa11.55□□□□□ -0.56
SMARCB1-207ENST00000491967 PPM1GO15355 546 aaPredicted RBP11.54□□□□□ -0.56
SMARCB1-207ENST00000491967 ARXQ96QS3 562 aa11.54□□□□□ -0.56
SMARCB1-207ENST00000491967 SPG7Q9UQ90 795 aa11.54□□□□□ -0.56
SMARCB1-207ENST00000491967 C5P01031 1676 aa11.54□□□□□ -0.56
SMARCB1-207ENST00000491967 PIGBQ92521 554 aa11.53□□□□□ -0.56
SMARCB1-207ENST00000491967 TFCP2L1Q9NZI6 479 aa11.53□□□□□ -0.56
SMARCB1-207ENST00000491967 PHKG2P15735 406 aa11.52□□□□□ -0.57
SMARCB1-207ENST00000491967 AMER1Q5JTC6 1135 aaPredicted RBP11.52□□□□□ -0.57
SMARCB1-207ENST00000491967 MPRIPQ6WCQ1 1025 aa11.52□□□□□ -0.57
SMARCB1-207ENST00000491967 COL23A1Q86Y22 540 aaPredicted RBP11.52□□□□□ -0.57
SMARCB1-207ENST00000491967 SMARCC1Q92922 1105 aaPredicted RBP11.52□□□□□ -0.57
SMARCB1-207ENST00000491967 PALLDQ8WX93 1383 aa11.52□□□□□ -0.57
SMARCB1-207ENST00000491967 PER1O15534 1290 aaPredicted RBP11.51□□□□□ -0.57
SMARCB1-207ENST00000491967 IFNL2Q8IZJ0 200 aa11.51□□□□□ -0.57
SMARCB1-207ENST00000491967 KIF7Q2M1P5 1343 aa11.51□□□□□ -0.57
SMARCB1-207ENST00000491967 UBR3Q6ZT12 1888 aa11.51□□□□□ -0.57
SMARCB1-207ENST00000491967 CHD4Q14839 1912 aa11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 ZNF831Q5JPB2 1677 aa11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 C4BP0C0L5 1744 aa11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 DCAF8L1A6NGE4 600 aa11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 TNNT2P45379 298 aaPredicted RBP11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 POLR3GLQ9BT43 218 aa11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 KDRP35968 1356 aa11.5□□□□□ -0.57
SMARCB1-207ENST00000491967 YY1P25490 414 aa11.49□□□□□ -0.57
SMARCB1-207ENST00000491967 FLAD1Q8NFF5 587 aa11.49□□□□□ -0.57
SMARCB1-207ENST00000491967 KNSTRNQ9Y448 316 aa11.49□□□□□ -0.57
SMARCB1-207ENST00000491967 LOC102724428A0A0B4J2F2 783 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 ERVV-2B6SEH9 535 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 POLD1P28340 1107 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 IL13P35225 146 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 SIK1P57059 783 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 IFFO2Q5TF58 517 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 MORC1Q86VD1 984 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 AMIGO3Q86WK7 504 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 ATG3Q9NT62 314 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 ASAP1Q9ULH1 1129 aa11.48□□□□□ -0.57
SMARCB1-207ENST00000491967 AMOTQ4VCS5 1084 aa11.47□□□□□ -0.57
SMARCB1-207ENST00000491967 DCAF5Q96JK2 942 aa11.47□□□□□ -0.57
SMARCB1-207ENST00000491967 TMOD3Q9NYL9 352 aa11.47□□□□□ -0.57
SMARCB1-207ENST00000491967 UTRNP46939 3433 aa11.47□□□□□ -0.57
SMARCB1-207ENST00000491967 NPC1L1Q9UHC9 1359 aa11.46□□□□□ -0.57
SMARCB1-207ENST00000491967 HSP90AB1P08238 724 aaKnown RBP11.46□□□□□ -0.57
SMARCB1-207ENST00000491967 PLEKHO1Q53GL0 409 aaPredicted RBP11.46□□□□□ -0.57
SMARCB1-207ENST00000491967 KDM6AO15550 1401 aaPredicted RBP11.45□□□□□ -0.58
SMARCB1-207ENST00000491967 SSFA2P28290 1259 aa11.45□□□□□ -0.58
SMARCB1-207ENST00000491967 ITPK1Q13572 414 aa11.45□□□□□ -0.58
SMARCB1-207ENST00000491967 AEBP1Q8IUX7 1158 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms