RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 USHBP1Q8N6Y0 703 aa21.89■■□□□ 1.09
SMPD4-220ENST00000491319 CARD14Q9BXL6 1004 aa21.89■■□□□ 1.09
SMPD4-220ENST00000491319 FLT4P35916 1363 aa21.88■■□□□ 1.09
SMPD4-220ENST00000491319 NBPF6Q5VWK0 638 aa21.88■■□□□ 1.09
SMPD4-220ENST00000491319 NBPF4Q96M43 638 aa21.88■■□□□ 1.09
SMPD4-220ENST00000491319 NSD2O96028 1365 aa21.87■■□□□ 1.09
SMPD4-220ENST00000491319 INSRP06213 1382 aa21.87■■□□□ 1.09
SMPD4-220ENST00000491319 PKD1L3Q7Z443 1732 aa21.86■■□□□ 1.09
SMPD4-220ENST00000491319 PTGER2P43116 358 aa21.86■■□□□ 1.09
SMPD4-220ENST00000491319 HSP90AB2PQ58FF8 381 aa21.86■■□□□ 1.09
SMPD4-220ENST00000491319 ZCRB1Q8TBF4 217 aaKnown RBP21.86■■□□□ 1.09
SMPD4-220ENST00000491319 LRRC4BQ9NT99 713 aa21.86■■□□□ 1.09
SMPD4-220ENST00000491319 ATF5Q9Y2D1 282 aaPredicted RBP21.86■■□□□ 1.09
SMPD4-220ENST00000491319 ZNF827Q17R98 1081 aa21.85■■□□□ 1.09
SMPD4-220ENST00000491319 SYTL4Q96C24 671 aaPredicted RBP21.85■■□□□ 1.09
SMPD4-220ENST00000491319 TOGARAM1Q9Y4F4 1720 aa21.85■■□□□ 1.09
SMPD4-220ENST00000491319 KIF24Q5T7B8 1368 aa21.85■■□□□ 1.09
SMPD4-220ENST00000491319 ITGB4P16144 1822 aa21.85■■□□□ 1.09
SMPD4-220ENST00000491319 PRIM1P49642 420 aaKnown RBP21.83■■□□□ 1.09
SMPD4-220ENST00000491319 EMILIN1Q9Y6C2 1016 aa21.83■■□□□ 1.09
SMPD4-220ENST00000491319 COL24A1Q17RW2 1714 aa21.81■■□□□ 1.08
SMPD4-220ENST00000491319 RAPGEF4Q8WZA2 1011 aa21.81■■□□□ 1.08
SMPD4-220ENST00000491319 MTFR1LQ9H019 292 aa21.81■■□□□ 1.08
SMPD4-220ENST00000491319 CGNL1Q0VF96 1302 aa21.8■■□□□ 1.08
SMPD4-220ENST00000491319 TAF1LQ8IZX4 1826 aa21.8■■□□□ 1.08
SMPD4-220ENST00000491319 C5P01031 1676 aa21.8■■□□□ 1.08
SMPD4-220ENST00000491319 POLR3GLQ9BT43 218 aa21.8■■□□□ 1.08
SMPD4-220ENST00000491319 KCNQ4P56696 695 aa21.79■■□□□ 1.08
SMPD4-220ENST00000491319 SLC27A3Q5K4L6 730 aa21.79■■□□□ 1.08
SMPD4-220ENST00000491319 TATP17735 454 aaPredicted RBP21.78■■□□□ 1.08
SMPD4-220ENST00000491319 AKT1S1Q96B36 256 aa21.78■■□□□ 1.08
SMPD4-220ENST00000491319 SGIP1Q9BQI5 828 aa21.78■■□□□ 1.08
SMPD4-220ENST00000491319 NCAPD2Q15021 1401 aa21.78■■□□□ 1.08
SMPD4-220ENST00000491319 PCDH11XQ9BZA7 1347 aa21.77■■□□□ 1.07
SMPD4-220ENST00000491319 PCDH11YQ9BZA8 1340 aa21.77■■□□□ 1.07
SMPD4-220ENST00000491319 PPM1GO15355 546 aaPredicted RBP21.76■■□□□ 1.07
SMPD4-220ENST00000491319 FHDC1Q9C0D6 1143 aaPredicted RBP21.75■■□□□ 1.07
SMPD4-220ENST00000491319 HSPA5P11021 654 aaKnown RBP21.74■■□□□ 1.07
SMPD4-220ENST00000491319 PNPLA7Q6ZV29 1317 aa21.74■■□□□ 1.07
SMPD4-220ENST00000491319 CHD4Q14839 1912 aa21.73■■□□□ 1.07
SMPD4-220ENST00000491319 DCAF8L1A6NGE4 600 aa21.73■■□□□ 1.07
SMPD4-220ENST00000491319 EIF4G2P78344 907 aaKnown RBP eCLIP21.73■■□□□ 1.07
SMPD4-220ENST00000491319 CCER1Q8TC90 406 aaPredicted RBP21.73■■□□□ 1.07
SMPD4-220ENST00000491319 CYP27B1O15528 508 aa21.72■■□□□ 1.07
SMPD4-220ENST00000491319 YY1P25490 414 aa21.72■■□□□ 1.07
SMPD4-220ENST00000491319 SYT17Q9BSW7 474 aa21.72■■□□□ 1.07
SMPD4-220ENST00000491319 CCNL1Q9UK58 526 aaPredicted RBP21.72■■□□□ 1.07
SMPD4-220ENST00000491319 WASHC2AQ641Q2 1341 aa21.72■■□□□ 1.07
SMPD4-220ENST00000491319 TFCP2L1Q9NZI6 479 aa21.71■■□□□ 1.07
SMPD4-220ENST00000491319 ARXQ96QS3 562 aa21.7■■□□□ 1.06
SMPD4-220ENST00000491319 POLKQ9UBT6 870 aa21.7■■□□□ 1.06
SMPD4-220ENST00000491319 TNNT2P45379 298 aaPredicted RBP21.68■■□□□ 1.06
SMPD4-220ENST00000491319 C4BP0C0L5 1744 aa21.68■■□□□ 1.06
SMPD4-220ENST00000491319 UBR3Q6ZT12 1888 aa21.67■■□□□ 1.06
SMPD4-220ENST00000491319 PALLDQ8WX93 1383 aa21.67■■□□□ 1.06
SMPD4-220ENST00000491319 MAP3K5Q99683 1374 aa21.67■■□□□ 1.06
SMPD4-220ENST00000491319 SLC16A10Q8TF71 515 aa21.67■■□□□ 1.06
SMPD4-220ENST00000491319 EYA1Q99502 592 aa21.67■■□□□ 1.06
SMPD4-220ENST00000491319 MPRIPQ6WCQ1 1025 aa21.66■■□□□ 1.06
SMPD4-220ENST00000491319 PANK3Q9H999 370 aa21.66■■□□□ 1.06
SMPD4-220ENST00000491319 EIF4A2Q14240 407 aaKnown RBP21.64■■□□□ 1.05
SMPD4-220ENST00000491319 UTRNP46939 3433 aa21.64■■□□□ 1.05
SMPD4-220ENST00000491319 SPG7Q9UQ90 795 aa21.63■■□□□ 1.05
SMPD4-220ENST00000491319 POLD1P28340 1107 aa21.62■■□□□ 1.05
SMPD4-220ENST00000491319 NKX1-1Q15270 411 aaPredicted RBP21.61■■□□□ 1.05
SMPD4-220ENST00000491319 COL23A1Q86Y22 540 aaPredicted RBP21.61■■□□□ 1.05
SMPD4-220ENST00000491319 KLHL34Q8N239 644 aa21.61■■□□□ 1.05
SMPD4-220ENST00000491319 PIGBQ92521 554 aa21.6■■□□□ 1.05
SMPD4-220ENST00000491319 MSH5O43196 834 aa21.59■■□□□ 1.05
SMPD4-220ENST00000491319 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.59■■□□□ 1.05
SMPD4-220ENST00000491319 IGSF1Q8N6C5 1336 aa21.58■■□□□ 1.05
SMPD4-220ENST00000491319 SMARCC1Q92922 1105 aaPredicted RBP21.58■■□□□ 1.05
SMPD4-220ENST00000491319 PHKG2P15735 406 aa21.57■■□□□ 1.04
SMPD4-220ENST00000491319 MSL1Q68DK7 614 aa21.56■■□□□ 1.04
SMPD4-220ENST00000491319 IFNL2Q8IZJ0 200 aa21.56■■□□□ 1.04
SMPD4-220ENST00000491319 VIRMAQ69YN4 1812 aaKnown RBP21.56■■□□□ 1.04
SMPD4-220ENST00000491319 PLEKHG2Q9H7P9 1386 aa21.56■■□□□ 1.04
SMPD4-220ENST00000491319 TMOD3Q9NYL9 352 aa21.55■■□□□ 1.04
SMPD4-220ENST00000491319 MORC1Q86VD1 984 aa21.54■■□□□ 1.04
SMPD4-220ENST00000491319 AMIGO3Q86WK7 504 aa21.54■■□□□ 1.04
SMPD4-220ENST00000491319 NLGN2Q8NFZ4 835 aa21.54■■□□□ 1.04
SMPD4-220ENST00000491319 COL5A3P25940 1745 aaPredicted RBP21.53■■□□□ 1.04
SMPD4-220ENST00000491319 ZNF831Q5JPB2 1677 aa21.53■■□□□ 1.04
SMPD4-220ENST00000491319 LOC102724428A0A0B4J2F2 783 aa21.52■■□□□ 1.04
SMPD4-220ENST00000491319 SIK1P57059 783 aa21.52■■□□□ 1.04
SMPD4-220ENST00000491319 AK7Q96M32 723 aa21.52■■□□□ 1.04
SMPD4-220ENST00000491319 ASAP1Q9ULH1 1129 aa21.52■■□□□ 1.04
SMPD4-220ENST00000491319 KIF7Q2M1P5 1343 aa21.52■■□□□ 1.03
SMPD4-220ENST00000491319 GOLGB1Q14789 3259 aaKnown RBP21.51■■□□□ 1.03
SMPD4-220ENST00000491319 SCN11AQ9UI33 1791 aa21.51■■□□□ 1.03
SMPD4-220ENST00000491319 HMGB2P26583 209 aaKnown RBP21.51■■□□□ 1.03
SMPD4-220ENST00000491319 GPR162Q16538 588 aa21.51■■□□□ 1.03
SMPD4-220ENST00000491319 LINC00116Q8NCU8 138 aa21.51■■□□□ 1.03
SMPD4-220ENST00000491319 KNSTRNQ9Y448 316 aa21.51■■□□□ 1.03
SMPD4-220ENST00000491319 KDM6AO15550 1401 aaPredicted RBP21.5■■□□□ 1.03
SMPD4-220ENST00000491319 SMIM5Q71RC9 77 aa21.5■■□□□ 1.03
SMPD4-220ENST00000491319 FLAD1Q8NFF5 587 aa21.5■■□□□ 1.03
SMPD4-220ENST00000491319 PHF14O94880 888 aa21.49■■□□□ 1.03
SMPD4-220ENST00000491319 AEBP1Q8IUX7 1158 aa21.49■■□□□ 1.03
SMPD4-220ENST00000491319 PELP1Q8IZL8 1130 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms