RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	HAP1	P54257	671 aa	Predicted RBP	11.82	□□□□□ -0.52
ERCC3-208	ENST00000491292	ZRSR1	Q15695	479 aa	Known RBP	11.82	□□□□□ -0.52
ERCC3-208	ENST00000491292	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.82	□□□□□ -0.52
ERCC3-208	ENST00000491292	TSPYL4	Q9UJ04	414 aa		11.82	□□□□□ -0.52
ERCC3-208	ENST00000491292	CCDC9	Q9Y3X0	531 aa	Known RBP	11.82	□□□□□ -0.52
ERCC3-208	ENST00000491292	BICD2	Q8TD16	824 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	DCTPP1	Q9H773	170 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	CCDC83	Q8IWF9	413 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	C14orf93	Q9H972	538 aa	Known RBP	11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292		V9GYY5	206 aa	Predicted RBP	11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	PTPRT	O14522	1441 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	ERVK-7	P63135	1459 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	SURF6	O75683	361 aa	Known RBP	11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	CPA1	P15085	419 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	DDIT3	P35638	169 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	WAPL	Q7Z5K2	1190 aa		11.81	□□□□□ -0.52
ERCC3-208	ENST00000491292	CWC27	Q6UX04	472 aa	Known RBP	11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	NME9	Q86XW9	330 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	ATP6V1D	Q9Y5K8	247 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	MCM2	P49736	904 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	PALD1	Q9ULE6	856 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	CCDC183	Q5T5S1	534 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	LRRCC1	Q9C099	1032 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	ABCC10	Q5T3U5	1492 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292		E9PCH4	1651 aa		11.8	□□□□□ -0.52
ERCC3-208	ENST00000491292	STK3	Q13188	491 aa		11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	ZDHHC9	Q9Y397	364 aa		11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	PDE1A	P54750	535 aa		11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	MYRIP	Q8NFW9	859 aa		11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	SPG7	Q9UQ90	795 aa		11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	PLEKHF1	Q96S99	279 aa		11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	PHF23	Q9BUL5	403 aa	Predicted RBP	11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	CFAP65	Q6ZU64	1925 aa	Known RBP	11.79	□□□□□ -0.52
ERCC3-208	ENST00000491292	IL16	Q14005	1332 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	MX1	P20591	662 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	ANKRD44	Q8N8A2	993 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	BBX	Q8WY36	941 aa	Predicted RBP	11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	GOLGA6L19	H0YKK7	550 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	GNAI2	P04899	355 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	CEP85	Q6P2H3	762 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	TFIP11	Q9UBB9	837 aa	Known RBP	11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	RIOK3	O14730	519 aa	Known RBP	11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	TERF1	P54274	439 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	BCL2L12	Q9HB09	334 aa		11.78	□□□□□ -0.52
ERCC3-208	ENST00000491292	BECN2	A8MW95	431 aa		11.77	□□□□□ -0.52
ERCC3-208	ENST00000491292	HSP90B1	P14625	803 aa	Known RBP	11.77	□□□□□ -0.52
ERCC3-208	ENST00000491292	FAM184A	Q8NB25	1140 aa		11.77	□□□□□ -0.52
ERCC3-208	ENST00000491292	PRIMPOL	Q96LW4	560 aa		11.77	□□□□□ -0.52
ERCC3-208	ENST00000491292	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.77	□□□□□ -0.52
ERCC3-208	ENST00000491292	ZMYM3	Q14202	1370 aa		11.77	□□□□□ -0.52
ERCC3-208	ENST00000491292	GORAB	Q5T7V8	394 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	FILIP1	Q7Z7B0	1213 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	AEBP1	Q8IUX7	1158 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	ADCY10	Q96PN6	1610 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	CCDC192	P0DO97	292 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	CAST	P20810	708 aa	Known RBP	11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	PTGS1	P23219	599 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	FAM173B	Q6P4H8	233 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	CCDC112	Q8NEF3	446 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	POLK	Q9UBT6	870 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.77	□□□□□ -0.53
ERCC3-208	ENST00000491292	DNM1	Q05193	864 aa	Known RBP	11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	ZBTB9	Q96C00	473 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	TCEANC2	Q96MN5	208 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	ESYT1	Q9BSJ8	1104 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292		A0A1W2PP64	1363 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	SRCIN1	Q9C0H9	1055 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	TRMT1	Q9NXH9	659 aa	Known RBP	11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	SYNM	O15061	1565 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	PPFIA3	O75145	1194 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	CCDC186	Q7Z3E2	898 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	NECAB1	Q8N987	351 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	PIBF1	Q8WXW3	757 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	TNNT1	P13805	278 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	ARHGAP45	Q92619	1136 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	JAKMIP1	Q96N16	626 aa	Known RBP	11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	ANKRD36B	Q8N2N9	1353 aa		11.76	□□□□□ -0.53
ERCC3-208	ENST00000491292	UGGT1	Q9NYU2	1555 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	STX6	O43752	255 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	PDLIM2	Q96JY6	352 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	VGLL3	A8MV65	326 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	UBTFL1	P0CB47	393 aa	Predicted RBP	11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	TRH	P20396	242 aa	Predicted RBP	11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	ATP2B3	Q16720	1220 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	LARP1B	Q659C4	914 aa	Known RBP	11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	TNMD	Q9H2S6	317 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	FMNL2	Q96PY5	1086 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	ESF1	Q9H501	851 aa	Known RBP	11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	DUOX2	Q9NRD8	1548 aa		11.75	□□□□□ -0.53
ERCC3-208	ENST00000491292	G2E3	Q7L622	706 aa		11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292	PYCARD	Q9ULZ3	195 aa		11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292		H3BQV1	296 aa		11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292	BRD1	O95696	1058 aa		11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292	IFFO2	Q5TF58	517 aa		11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292	LETM1	O95202	739 aa	Predicted RBP	11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292	LUZP1	Q86V48	1076 aa		11.74	□□□□□ -0.53
ERCC3-208	ENST00000491292	NUP62CL	Q9H1M0	184 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms