RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 XIRP1Q702N8 1843 aaKnown RBP9.18□□□□□ -0.94
SYNE1-229ENST00000490866 USP54Q70EL1 1684 aa9.18□□□□□ -0.94
SYNE1-229ENST00000490866 SMG6Q86US8 1419 aaKnown RBP9.18□□□□□ -0.94
SYNE1-229ENST00000490866 IP6K1Q92551 441 aa9.18□□□□□ -0.94
SYNE1-229ENST00000490866 RUNDC1Q96C34 613 aa9.18□□□□□ -0.94
SYNE1-229ENST00000490866 PLEKHG2Q9H7P9 1386 aa9.18□□□□□ -0.94
SYNE1-229ENST00000490866 MAP2P11137 1827 aaKnown RBP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 NRKQ7Z2Y5 1582 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 CDK12Q9NYV4 1490 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 TNS3Q68CZ2 1445 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 USP19O94966 1318 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 PPM1GO15355 546 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 U2AF1L5P0DN76 240 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 U2AF1Q01081 240 aaKnown RBP eCLIP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 CALD1Q05682 793 aaKnown RBP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 DPY19L2Q6NUT2 758 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 SLAIN1Q8ND83 568 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 FBXO22Q8NEZ5 403 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 RYDENQ9NUL5 291 aaKnown RBP9.17□□□□□ -0.94
SYNE1-229ENST00000490866 ADAMTS8Q9UP79 889 aa9.17□□□□□ -0.94
SYNE1-229ENST00000490866 BLMP54132 1417 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-229ENST00000490866 ZBED9Q6R2W3 1325 aa9.16□□□□□ -0.94
SYNE1-229ENST00000490866 MAPK8IP3Q9UPT6 1336 aa9.16□□□□□ -0.94
SYNE1-229ENST00000490866 UBAP1LF5GYI3 381 aa9.16□□□□□ -0.94
SYNE1-229ENST00000490866 HAP1P54257 671 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-229ENST00000490866 LMOD3Q0VAK6 560 aa9.16□□□□□ -0.94
SYNE1-229ENST00000490866 ARHGEF25Q86VW2 580 aa9.16□□□□□ -0.94
SYNE1-229ENST00000490866 MFRPQ9BY79 579 aa9.16□□□□□ -0.94
SYNE1-229ENST00000490866 ABCC6O95255 1503 aa9.15□□□□□ -0.94
SYNE1-229ENST00000490866 CPDO75976 1380 aa9.15□□□□□ -0.94
SYNE1-229ENST00000490866 IL13P35225 146 aa9.15□□□□□ -0.94
SYNE1-229ENST00000490866 HNRNPUQ00839 825 aaKnown RBP eCLIP9.15□□□□□ -0.94
SYNE1-229ENST00000490866 CCDC27Q2M243 656 aa9.15□□□□□ -0.94
SYNE1-229ENST00000490866 MS4A4AQ96JQ5 239 aa9.15□□□□□ -0.94
SYNE1-229ENST00000490866 MAP3K19Q56UN5 1328 aa9.14□□□□□ -0.95
SYNE1-229ENST00000490866 U2SURPO15042 1029 aaKnown RBP9.14□□□□□ -0.95
SYNE1-229ENST00000490866 SNPHO15079 494 aa9.14□□□□□ -0.95
SYNE1-229ENST00000490866 HOXC9P31274 260 aa9.14□□□□□ -0.95
SYNE1-229ENST00000490866 CHMP4AQ9BY43 222 aa9.14□□□□□ -0.95
SYNE1-229ENST00000490866 PXDNQ92626 1479 aa9.14□□□□□ -0.95
SYNE1-229ENST00000490866 HTATSF1O43719 755 aaKnown RBP9.13□□□□□ -0.95
SYNE1-229ENST00000490866 AMOTQ4VCS5 1084 aa9.13□□□□□ -0.95
SYNE1-229ENST00000490866 CCDC184Q52MB2 194 aa9.13□□□□□ -0.95
SYNE1-229ENST00000490866 WDR63Q8IWG1 891 aa9.13□□□□□ -0.95
SYNE1-229ENST00000490866 AHDC1Q5TGY3 1603 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-229ENST00000490866 SLIT3O75094 1523 aa9.12□□□□□ -0.95
SYNE1-229ENST00000490866 TRPM3Q9HCF6 1732 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-229ENST00000490866 RRS1Q15050 365 aaKnown RBP9.12□□□□□ -0.95
SYNE1-229ENST00000490866 EMILIN1Q9Y6C2 1016 aa9.12□□□□□ -0.95
SYNE1-229ENST00000490866 PIK3C2AO00443 1686 aa9.12□□□□□ -0.95
SYNE1-229ENST00000490866 PHRF1Q9P1Y6 1649 aaKnown RBP9.12□□□□□ -0.95
SYNE1-229ENST00000490866 SPATA31A6Q5VVP1 1343 aa9.11□□□□□ -0.95
SYNE1-229ENST00000490866 ALS2Q96Q42 1657 aa9.11□□□□□ -0.95
SYNE1-229ENST00000490866 XPCQ01831 940 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-229ENST00000490866 EIF4A2Q14240 407 aaKnown RBP9.11□□□□□ -0.95
SYNE1-229ENST00000490866 HSP90AB2PQ58FF8 381 aa9.11□□□□□ -0.95
SYNE1-229ENST00000490866 NUTM2GQ5VZR2 741 aa9.11□□□□□ -0.95
SYNE1-229ENST00000490866 GAS2L2Q8NHY3 880 aa9.11□□□□□ -0.95
SYNE1-229ENST00000490866 NHSL1Q5SYE7 1610 aa9.11□□□□□ -0.95
SYNE1-229ENST00000490866 MED1Q15648 1581 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-229ENST00000490866 EVA1CP58658 441 aa9.1□□□□□ -0.95
SYNE1-229ENST00000490866 MICALL2Q8IY33 904 aa9.1□□□□□ -0.95
SYNE1-229ENST00000490866 YTHDC1Q96MU7 727 aaKnown RBP9.1□□□□□ -0.95
SYNE1-229ENST00000490866 CDCA7Q9BWT1 371 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-229ENST00000490866 SULT6B1Q6IMI4 303 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 TCP11L2Q8N4U5 519 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 PLEKHF1Q96S99 279 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 PRDM11Q9NQV5 511 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 BABAM1Q9NWV8 329 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 ROBO1Q9Y6N7 1651 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 KDRP35968 1356 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 JCADQ9P266 1359 aa9.09□□□□□ -0.95
SYNE1-229ENST00000490866 IL16Q14005 1332 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 IGSF1Q8N6C5 1336 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 E9PSI1 815 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 APAF1O14727 1248 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 CT47B1P0C2W7 299 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-229ENST00000490866 ZC3H6P61129 1189 aaKnown RBP9.08□□□□□ -0.96
SYNE1-229ENST00000490866 PIP4K2BP78356 416 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 PLEKHO1Q53GL0 409 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-229ENST00000490866 RTF1Q92541 710 aaKnown RBP9.08□□□□□ -0.96
SYNE1-229ENST00000490866 EYA1Q99502 592 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 RSPH6AQ9H0K4 717 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 MYH16Q9H6N6 1097 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 NFAT5O94916 1531 aa9.08□□□□□ -0.96
SYNE1-229ENST00000490866 COL3A1P02461 1466 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-229ENST00000490866 HSP90AB1P08238 724 aaKnown RBP9.07□□□□□ -0.96
SYNE1-229ENST00000490866 CSB-PGBD3P0DP91 1061 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 PRKAR2BP31323 418 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 TMPOP42166 694 aaKnown RBP9.07□□□□□ -0.96
SYNE1-229ENST00000490866 RIPK4P57078 832 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 NFE2L2Q16236 605 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 ANKRD24Q8TF21 1146 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 RAPGEF4Q8WZA2 1011 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 ZNF428Q96B54 188 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 SPG7Q9UQ90 795 aa9.07□□□□□ -0.96
SYNE1-229ENST00000490866 THRAP3Q9Y2W1 955 aaKnown RBP9.07□□□□□ -0.96
SYNE1-229ENST00000490866 ERBB3P21860 1342 aa9.06□□□□□ -0.96
SYNE1-229ENST00000490866 WWC1Q8IX03 1113 aa9.06□□□□□ -0.96
SYNE1-229ENST00000490866 DDX17Q92841 729 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms