RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 LRRC59Q96AG4 307 aaKnown RBP12.97□□□□□ -0.33
HDAC9-225ENST00000490851 TNNQ9UQP3 1299 aa12.97□□□□□ -0.33
HDAC9-225ENST00000490851 RTL1A6NKG5 1358 aa12.97□□□□□ -0.33
HDAC9-225ENST00000490851 KIF24Q5T7B8 1368 aa12.97□□□□□ -0.33
HDAC9-225ENST00000490851 ELL2O00472 640 aaPredicted RBP12.97□□□□□ -0.33
HDAC9-225ENST00000490851 CALD1Q05682 793 aaKnown RBP12.97□□□□□ -0.33
HDAC9-225ENST00000490851 BRINP3Q76B58 766 aa12.97□□□□□ -0.33
HDAC9-225ENST00000490851 SMC4Q9NTJ3 1288 aa12.97□□□□□ -0.33
HDAC9-225ENST00000490851 CDK11BP21127 795 aaKnown RBP12.96□□□□□ -0.34
HDAC9-225ENST00000490851 GNAI1P63096 354 aa12.96□□□□□ -0.34
HDAC9-225ENST00000490851 ARHGEF25Q86VW2 580 aa12.96□□□□□ -0.34
HDAC9-225ENST00000490851 CLUAP1Q96AJ1 413 aa12.96□□□□□ -0.34
HDAC9-225ENST00000490851 MBIPQ9NS73 344 aa12.96□□□□□ -0.34
HDAC9-225ENST00000490851 KDRP35968 1356 aa12.95□□□□□ -0.34
HDAC9-225ENST00000490851 USP19O94966 1318 aa12.95□□□□□ -0.34
HDAC9-225ENST00000490851 HSP90B1P14625 803 aaKnown RBP12.95□□□□□ -0.34
HDAC9-225ENST00000490851 NBPF6Q5VWK0 638 aa12.95□□□□□ -0.34
HDAC9-225ENST00000490851 NBPF4Q96M43 638 aa12.95□□□□□ -0.34
HDAC9-225ENST00000490851 SLAIN2Q9P270 581 aa12.95□□□□□ -0.34
HDAC9-225ENST00000490851 SSH1Q8WYL5 1049 aa12.94□□□□□ -0.34
HDAC9-225ENST00000490851 IFT57Q9NWB7 429 aa12.94□□□□□ -0.34
HDAC9-225ENST00000490851 COG6Q9Y2V7 657 aa12.94□□□□□ -0.34
HDAC9-225ENST00000490851 SLIT3O75094 1523 aa12.94□□□□□ -0.34
HDAC9-225ENST00000490851 TCERG1O14776 1098 aaKnown RBP12.94□□□□□ -0.34
HDAC9-225ENST00000490851 AXIN2Q9Y2T1 843 aa12.94□□□□□ -0.34
HDAC9-225ENST00000490851 ALS2Q96Q42 1657 aa12.94□□□□□ -0.34
HDAC9-225ENST00000490851 TSPYL6Q8N831 410 aa12.93□□□□□ -0.34
HDAC9-225ENST00000490851 RTF1Q92541 710 aaKnown RBP12.93□□□□□ -0.34
HDAC9-225ENST00000490851 MED1Q15648 1581 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-225ENST00000490851 ANKRD24Q8TF21 1146 aa12.93□□□□□ -0.34
HDAC9-225ENST00000490851 CFAP44Q96MT7 982 aa12.93□□□□□ -0.34
HDAC9-225ENST00000490851 MIS18AQ9NYP9 233 aa12.93□□□□□ -0.34
HDAC9-225ENST00000490851 BCCIPQ9P287 314 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDAC9-225ENST00000490851 TNS3Q68CZ2 1445 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 PXDNQ92626 1479 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 RGPD2P0DJD1 1756 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 ZNF853P0CG23 659 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 RLBP1P12271 317 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 CHRNA2Q15822 529 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 GAS2L2Q8NHY3 880 aa12.92□□□□□ -0.34
HDAC9-225ENST00000490851 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.92□□□□□ -0.34
HDAC9-225ENST00000490851 CT47B1P0C2W7 299 aaPredicted RBP12.91□□□□□ -0.34
HDAC9-225ENST00000490851 KRT24Q2M2I5 525 aa12.91□□□□□ -0.34
HDAC9-225ENST00000490851 C8orf58Q8NAV2 365 aa12.91□□□□□ -0.34
HDAC9-225ENST00000490851 SPATA31A3Q5VYP0 1347 aa12.91□□□□□ -0.34
HDAC9-225ENST00000490851 PDE3AQ14432 1141 aa12.9□□□□□ -0.34
HDAC9-225ENST00000490851 FTSJ3Q8IY81 847 aaKnown RBP12.9□□□□□ -0.34
HDAC9-225ENST00000490851 NOB1Q9ULX3 412 aaKnown RBP12.9□□□□□ -0.34
HDAC9-225ENST00000490851 TWISTNBQ3B726 338 aaPredicted RBP12.9□□□□□ -0.34
HDAC9-225ENST00000490851 ZKSCAN2Q63HK3 967 aa12.9□□□□□ -0.34
HDAC9-225ENST00000490851 NAP1L5Q96NT1 182 aaPredicted RBP12.9□□□□□ -0.34
HDAC9-225ENST00000490851 PAXIP1Q6ZW49 1069 aaPredicted RBP12.89□□□□□ -0.35
HDAC9-225ENST00000490851 RGPD5Q99666 1765 aa12.89□□□□□ -0.35
HDAC9-225ENST00000490851 GNAT3A8MTJ3 354 aa12.89□□□□□ -0.35
HDAC9-225ENST00000490851 VAMP4O75379 141 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 SKAP1Q86WV1 359 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 PHRF1Q9P1Y6 1649 aaKnown RBP12.88□□□□□ -0.35
HDAC9-225ENST00000490851 CSB-PGBD3P0DP91 1061 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 NLRP2Q9NX02 1062 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 TSPYL4Q9UJ04 414 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 MAP3K5Q99683 1374 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 CRB1P82279 1406 aa12.88□□□□□ -0.35
HDAC9-225ENST00000490851 TRIM27P14373 513 aa12.87□□□□□ -0.35
HDAC9-225ENST00000490851 DZIP1LQ8IYY4 767 aaKnown RBP12.87□□□□□ -0.35
HDAC9-225ENST00000490851 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
HDAC9-225ENST00000490851 ERBB3P21860 1342 aa12.87□□□□□ -0.35
HDAC9-225ENST00000490851 CHL1O00533 1208 aa12.87□□□□□ -0.35
HDAC9-225ENST00000490851 ALDH1L2Q3SY69 923 aa12.86□□□□□ -0.35
HDAC9-225ENST00000490851 ZNF530Q6P9A1 599 aaPredicted RBP12.86□□□□□ -0.35
HDAC9-225ENST00000490851 ATF7IPQ6VMQ6 1270 aa12.86□□□□□ -0.35
HDAC9-225ENST00000490851 ITPRIPQ8IWB1 547 aa12.86□□□□□ -0.35
HDAC9-225ENST00000490851 IL17REQ8NFR9 667 aa12.86□□□□□ -0.35
HDAC9-225ENST00000490851 KIF16BQ96L93 1317 aa12.85□□□□□ -0.35
HDAC9-225ENST00000490851 SOS2Q07890 1332 aaPredicted RBP12.85□□□□□ -0.35
HDAC9-225ENST00000490851 TMEM132AQ24JP5 1023 aa12.84□□□□□ -0.35
HDAC9-225ENST00000490851 MRPL50Q8N5N7 158 aaKnown RBP12.84□□□□□ -0.35
HDAC9-225ENST00000490851 PRDM11Q9NQV5 511 aa12.84□□□□□ -0.35
HDAC9-225ENST00000490851 IPO8O15397 1037 aaKnown RBP12.83□□□□□ -0.35
HDAC9-225ENST00000490851 MVPQ14764 893 aaKnown RBP12.83□□□□□ -0.35
HDAC9-225ENST00000490851 PLEKHO1Q53GL0 409 aaPredicted RBP12.83□□□□□ -0.35
HDAC9-225ENST00000490851 MPRIPQ6WCQ1 1025 aa12.83□□□□□ -0.35
HDAC9-225ENST00000490851 LGR6Q9HBX8 967 aa12.83□□□□□ -0.35
HDAC9-225ENST00000490851 TMEM57Q8N5G2 664 aa12.83□□□□□ -0.36
HDAC9-225ENST00000490851 HTATSF1O43719 755 aaKnown RBP12.82□□□□□ -0.36
HDAC9-225ENST00000490851 C1orf141Q5JVX7 400 aa12.82□□□□□ -0.36
HDAC9-225ENST00000490851 NECTIN2Q92692 538 aa12.82□□□□□ -0.36
HDAC9-225ENST00000490851 ZNF428Q96B54 188 aa12.82□□□□□ -0.36
HDAC9-225ENST00000490851 CRYBG1Q9Y4K1 1723 aa12.82□□□□□ -0.36
HDAC9-225ENST00000490851 MS4A1P11836 297 aa12.81□□□□□ -0.36
HDAC9-225ENST00000490851 RAPGEF4Q8WZA2 1011 aa12.81□□□□□ -0.36
HDAC9-225ENST00000490851 KDM2BQ8NHM5 1336 aa12.81□□□□□ -0.36
HDAC9-225ENST00000490851 IGHDP01880 384 aa12.81□□□□□ -0.36
HDAC9-225ENST00000490851 CENPQQ7L2Z9 268 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-225ENST00000490851 TAF7Q15545 349 aaPredicted RBP12.8□□□□□ -0.36
HDAC9-225ENST00000490851 AKAP4Q5JQC9 854 aa12.8□□□□□ -0.36
HDAC9-225ENST00000490851 VSIG10Q8N0Z9 540 aa12.8□□□□□ -0.36
HDAC9-225ENST00000490851 LRRC37A3O60309 1634 aa12.8□□□□□ -0.36
HDAC9-225ENST00000490851 COL18A1P39060 1754 aa12.8□□□□□ -0.36
HDAC9-225ENST00000490851 AMOTQ4VCS5 1084 aa12.8□□□□□ -0.36
HDAC9-225ENST00000490851 PCDHB15Q9Y5E8 787 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms